Carg14095 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14095
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome c oxidase assembly factor 6
Location	Carg_Chr02: 6113828 .. 6114807 (-)
RNA-Seq Expression	Carg14095
Synteny	Carg14095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGGAACGATCGAAAACCCCAACCGCGAAAGAAACCAAGCAACATAGCATAGCATCTCCGTCTCTGTTGTAGCAACTATGGCTCCCGAAACTGATCCGTCTGGAGGCTCGGAAGAAGTTCACACCGATGTTTTAGCGGAATTCAGACAAGCTTGCTACAAGGTTATATCTCTCAATCGCTCACTTATTCTCCACGATTTCTGTTTCTTAAGAATCCTTGAGTATTGATTTGGCAATTTCATGCATCTGGACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCAGACAAGAAGCCCACTGAAATTGCTTCTGTTGGCCTTCTTTATCCCGCTGAGTGTAAAGCCTCCAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATTTCATGGCCTGATCCCTGAATATTTTATTAATCTGTTGGTTCTTAGAATTCATGGTTTGAAGGGTTTTTGATTTCTGGTGTTTTTGATTTGGTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGCCCTTTGGTACTTCCGCAGCCTTACACTTTCAAGCCCACTAGTTGAACAAAACACCATCCCCAGGCGGAACTATTTTGGGCGGTCAGAATCTCATGACTATTGTTATTTTGTTTTGTTTTCTTTTGTTCCTTCTCTTACTTTGTACAGAGATGACTGTGGCGATAAACTTCATAATAATGCACTCTTCTTACCAACTTACAAAAGCCTATTCCTTTCCTTTGATACATATAATTTGAATGTATAGTAGGATCTACTTCTAATCAGCAAAGTGAAAAATTATTTAATGAGACATCTAAAATGTGGCTGCTCTTTAATAATTGTGGGACGTGGATTCAAAAATCTGAATGCCCCCTAATAACCATTTGATATAAATTTGAAGTATTTGTGCAGTTTCTGTCTCCTA

mRNA sequence

GGTTGGAACGATCGAAAACCCCAACCGCGAAAGAAACCAAGCAACATAGCATAGCATCTCCGTCTCTGTTGTAGCAACTATGGCTCCCGAAACTGATCCGTCTGGAGGCTCGGAAGAAGTTCACACCGATGTTTTAGCGGAATTCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCAGACAAGAAGCCCACTGAAATTGCTTCTGTTGGCCTTCTTTATCCCGCTGAGTGTAAAGCCTCCAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGCCCTTTGGTACTTCCGCAGCCTTACACTTTCAAGCCCACTAGTTGAACAAAACACCATCCCCAGGCGGAACTATTTTGGGCGGTCAGAATCTCATGACTATTGTTATTTTGTTTTGTTTTCTTTTGTTCCTTCTCTTACTTTGTACAGAGATGACTGTGGCGATAAACTTCATAATAATGCACTCTTCTTACCAACTTACAAAAGCCTATTCCTTTCCTTTGATACATATAATTTGAATGTATAGTAGGATCTACTTCTAATCAGCAAAGTGAAAAATTATTTAATGAGACATCTAAAATGTGGCTGCTCTTTAATAATTGTGGGACGTGGATTCAAAAATCTGAATGCCCCCTAATAACCATTTGATATAAATTTGAAGTATTTGTGCAGTTTCTGTCTCCTA

Coding sequence (CDS)

ATGGCTCCCGAAACTGATCCGTCTGGAGGCTCGGAAGAAGTTCACACCGATGTTTTAGCGGAATTCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCAGACAAGAAGCCCACTGAAATTGCTTCTGTTGGCCTTCTTTATCCCGCTGAGTGTAAAGCCTCCAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGCCCTTTGGTACTTCCGCAGCCTTACACTTTCAAGCCCACTAGTTGA

Protein sequence

MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS

Homology

[Close]

BLAST of Carg14095 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 2.3e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Carg14095 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 3.3e-58
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA ETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Carg14095 vs. NCBI nr
Match: XP_023529846.1 (cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 2.1e-57
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA  TDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALGTDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Carg14095 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Carg14095 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-52
Identity = 102/114 (89.47%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGG +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPT+
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Carg14095 vs. ExPASy TrEMBL
Match: A0A6J1EDW1 (cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC111433269 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Carg14095 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA ETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Carg14095 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Carg14095 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Carg14095 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.9e-52
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Carg14095 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA +T  S    +VH DVL + R ACYKARDAFYAC+EKES KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPT 114
            SR +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of Carg14095 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA +T  S    +VH DVL + R ACYKARDAFYAC+EKES KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPT 114
            SR +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of Carg14095 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926034.1	2.3e-59	100.00	cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypoth...	[more]
XP_022973432.1	3.3e-58	99.12	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]
XP_023529846.1	2.1e-57	98.25	cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo]	[more]
XP_008443871.1	2.1e-52	88.60	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_038878579.1	3.5e-52	89.47	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]

BLAST of Carg14095 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDW1	1.1e-59	100.00	cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1I7I2	1.6e-58	99.12	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]
A0A1S3B9T5	1.0e-52	88.60	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	1.0e-52	88.60	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1BZF0	2.9e-52	90.35	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Carg14095 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	1.2e-42	69.03	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	1.2e-42	69.03	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 18..91 e-value: 2.6E-8 score: 35.7
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 23..82
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 23..92 e-value: 5.4E-18 score: 65.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..114
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 4..112
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 4..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14095-RA	Carg14095-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV