Carg13833 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13833
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AT-rich interactive domain-containing protein 1-like isoform X1
Location	Carg_Chr08: 5138669 .. 5142465 (+)
RNA-Seq Expression	Carg13833
Synteny	Carg13833

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTCAGATGAGCTCATGAATTGTGTTGGCTTTGACGAAAATTCAATTTCAGATTTTTCCAAGAGAATATTTGATATGAAGAGTGATAGGATGAAGAGTGGGGTTGTATTTCCTCAAAGAAGCAAGAAACTCCAGGATATTGATCATTGCACCATAAAAAATGAGGATATAAAAGTTATCGATCCACCTTCGGTCAAGGAAGCAAATTTTGTCCCAGAGAGAACGCAGAAACCGATGTTGGGATTGCTTAATTGGCTGAAAGATGTTGCAAGAAACCCTTGTGATCCATCAATATGTTCACTACCAGAAAAGTCAAAATGGAAATCACATGGAAATGAAGAGGTTTGGAAACAAGTTTTGCTAGTTCGAGAGGAATTTTTTGTAAAAAGACGAGTCGATGCAAGTAGCGAGCAATCTTTCTTGCAGGTACTTTTCATAAATTCTTAAGTTGTTTATATTATATCTTTATCCATATAAAGAATCAAATGCTATTTATATCTGTGCCTGTATGAAGTTCTGTGTGTTCTCGTTGTCCCATGATATATAAGTTGATTGTAGTATTTTTCGAACTGCTTTTAGTATTTTATTGTTTTTCATATCATTGTTCTCTCCATCTTGATATGATTTTCATACTATGCATTTTGATTGGTATCCCTTTACATCTTAAATAGTGTTCTGTTCCTTGTAAACTGCAAAGATTCTCATTGTGAAGGCCAATATGGAACTAAGACATAATCTTAAAATGTATCATCGAGTTACTACAATAATTTGCTTTCATCTGATCTATAGTATCTATCTAGTTTAGTTGGTTATTTAGTATTATGAACCTTTGTATCTCTTAGGAATTTCTGTAGTGTCCTTTCCATATGTTTAATGGTTTAATGGTCTTGTGTGAATATAAAACTATAGAATCCTTCATATCAACTCAGAATATTATTTATCTCCGTATGAAGATACTATGAGTGTTAGCTGTTTAAAATTATGGTTCCCATATTAAGAAGAAATGAAAGTACTTTAGATGTCGATTTAACTATGTTCTTTTGTGGCCAATAGCTTGAATCTTCTAGTGTACATTTGATTTTTGAACTGCTTGTAGTTCGTGTGTGTGGAAATGTTTTTAGTTCCTTGTGAACATTTTTGAAATGTACTACTTTACTAGAAACACCAAGCAAAACTCTTCATTATTTTTATTAGAAGTATTTTAAACTAGGAAATGTAAAATAGTAGCTACATTGTGATATTTACAGATTCTTTTTTATTTTATCAGCTATCAAAATTTGTAAAACTATCCCATAGGAAGTATATTATTTGCTCTAAATAAGTGTTAAATTATTATTATCATAAATAGCTTTTGGGAAAAATTCATGTTTATTCCCTATATGTAACCTAGTGAAGTAGTATGATGGTTAAGTTTTTATTTCGTAAAATTGAATCTTGAGCTTAAGTAAGTGATGAAATTGGTTCCTCCAAATTTAATTAGAAAAAATTTCACGACCCAAGTAGTAAATTGTAGAAAATACCTGTAAAATACTATAAAAACTATTTATATCCAGCCATTAAAATATCAAAATCTAGCCTTAAACTTGAGCGTGGATATTAAGTCTAATATTCAACTAACATAATCAAGAAAATTACAATTCACCAAAATAGTCTCATTCAACCCTAAGGACTATAAAAAGCCAATTTGATAATTATATAGGCCCTAGCGATTTGATTTTTTGTTTATGAAAAATAAGCTTATAAATTATACTTGTTTCTCTTTATAATCATTTGGTTCTTTGTTTTTAAAAATTGTACTTTTTTTTTCTCATCATTTCTCTACAATTGGTTTCATCTTTCTTAAAAAAAATGTTTGAATTTTTCAACCAAATTTTCAAACACAAAAACTTGTTTTTGAAAGTTAGTCTTCATGGTACTTATAGGTATTGTAATTTTTTATTTATTTTTTGCAATAGTATTTGTTCCCTACTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCTTCCTTCCTTTTTATAACATGTTGAAAGCTACTATTACAAGAGTGGAAGTTTGAGGTCCTATTTGACATAAAATTTAATTTTATAAATAATGAATCAATTTATTTTCAAAAACTTTGAATATGTCATAAATATGTTAAACACAAAATTCAAAAACTTCTTAGACACAAAATTGTAGTTTCAAAGACCTATTAGACATTTCTTAGACACCTTTTAAATTTTAAGAATCTTATAGGCATAAACTTGAAAGTTCAAAAATTATGCTTCTAATCTTATAGACATGTACTTGTAATTTTGTAGACCTTTTGACATTGGGCAGGCGTCAGCCCCCATACATGGTCTTACCGACTTTGCGGAGACCTGTGTTTTTGGTAAATAGTCTCTCGGGCTTGGTCACTGCGACCCCCTTTGTTAGGAGGCACCCTTTCTTCTAAAGTTAACAGAGCTATTTTGCCGATTTCCTTAGAGAGAATTGTCTCGCGCCCTTAGGTATTCTCTTCCCACCTGTGACGGTTTTGGGTACATGTACCTTTTTGTTGAAGGTCGTTCAAGCTTTTCTTGAGAGTATGACATGGGTTACTTCAGCTCCATAGCACCTAGTAACCGTGGATTAGAGTAATGTGTTATAATGATGTCTAGGTCGAGAATTGAGAAGAACTAAATAAGTATGGTATCTAATGATAATGATAAAGTGAGTGTGAGAACGAGTGATAATGGTTTTTTTTAAAAGGATAAGTTATACAGAGAAGAGGGAGGAGAGGCCTCCCTGTCTTTCAAGGACTTGTTAACCTCACAACAACATGATAAATAAACATATTACAGAAGAAAAAAGAGAGGATATATGATGAGAATTGAGAAGGGGGATGAAATTAGAGTGTAAGGGAAGCCAACTATTGGCAGGATTCGGAGTTGTAAGGCTGGGTAATTTACTATCACCAAACTTAACGTCTTTGACATAATTTATTATCAGGTTCATTTGATCTTCCCTATTTTGCAGAGAAATCAGAGGATGCATCCTTGTATGTATGATAACGATACGGTTCCAATTTACAATCTTAGGAAGAGATTAAGCATTGACAAGAAGGTTCAATCTCAAGAACCTGTGTCTAAATCAAGTGATTCTTCACCCTCAGATTCATCAGATGAGTACAAGCCCGTTCTCCTAGGGCCAGATTATCAAGCTCAGATACCAGAATGGAATGGTGTGATATCCAACAGCAATTTGAAGTGGTTGGGAACTCAAGAATGGCCTTTAAACTTAAAGAAAGGAAGTAACAGAAATCCCGTTGAAAGGGATCCCATTGGAAAAGGAAGGCGAGATCCTTGTGGATGCTTGGACGCTGGTTCAGTTGGTTGTGTCAAATTTCACGTTGCTGAGAAAAGGCACAGACTAAAGCTAGAGTTGGGCGCTGCGTTTCTCCAATGGAGATTTGATCAGATGGGCGAAGATGTTACATTTGCTTGGAAAGTAGATGATGAGAAAAAGTTCGAGGATATAGTGACGTCGAACCCTCCATCCCTCGGGATATGTTTTTGGGATGAGATTGTTGAGTCATTCCCTTCCAGGAGCAGGGAAGATCTTGTTAGCTACTACTATAATGTCTTTCTTTTGCGTCGTAGAGGACACCAAAATCGGGTTACACCGAACAAAATCGATAGTGACGATGAATCAGAATCCGGGATTACAACGAATGGATTCGGACACAAAGTGCATAACTCACCCGGCTCCATTTTCTACTCTCCCAAGAAGCCACGGTAG

mRNA sequence

ATGTTGTCAGATGAGCTCATGAATTGTGTTGGCTTTGACGAAAATTCAATTTCAGATTTTTCCAAGAGAATATTTGATATGAAGAGTGATAGGATGAAGAGTGGGGTTGTATTTCCTCAAAGAAGCAAGAAACTCCAGGATATTGATCATTGCACCATAAAAAATGAGGATATAAAAGTTATCGATCCACCTTCGGTCAAGGAAGCAAATTTTGTCCCAGAGAGAACGCAGAAACCGATGTTGGGATTGCTTAATTGGCTGAAAGATGTTGCAAGAAACCCTTGTGATCCATCAATATGTTCACTACCAGAAAAGTCAAAATGGAAATCACATGGAAATGAAGAGGTTTGGAAACAAGTTTTGCTAGTTCGAGAGGAATTTTTTGTAAAAAGACGAGTCGATGCAAGTAGCGAGCAATCTTTCTTGCAGAGAAATCAGAGGATGCATCCTTGTATGTATGATAACGATACGGTTCCAATTTACAATCTTAGGAAGAGATTAAGCATTGACAAGAAGGTTCAATCTCAAGAACCTGTGTCTAAATCAAGTGATTCTTCACCCTCAGATTCATCAGATGAGTACAAGCCCGTTCTCCTAGGGCCAGATTATCAAGCTCAGATACCAGAATGGAATGGTGTGATATCCAACAGCAATTTGAAGTGGTTGGGAACTCAAGAATGGCCTTTAAACTTAAAGAAAGGAAGTAACAGAAATCCCGTTGAAAGGGATCCCATTGGAAAAGGAAGGCGAGATCCTTGTGGATGCTTGGACGCTGGTTCAGTTGGTTGTGTCAAATTTCACGTTGCTGAGAAAAGGCACAGACTAAAGCTAGAGTTGGGCGCTGCGTTTCTCCAATGGAGATTTGATCAGATGGGCGAAGATGTTACATTTGCTTGGAAAGTAGATGATGAGAAAAAGTTCGAGGATATAGTGACGTCGAACCCTCCATCCCTCGGGATATGTTTTTGGGATGAGATTGTTGAGTCATTCCCTTCCAGGAGCAGGGAAGATCTTGTTAGCTACTACTATAATGTCTTTCTTTTGCGTCGTAGAGGACACCAAAATCGGGTTACACCGAACAAAATCGATAGTGACGATGAATCAGAATCCGGGATTACAACGAATGGATTCGGACACAAAGTGCATAACTCACCCGGCTCCATTTTCTACTCTCCCAAGAAGCCACGGTAG

Coding sequence (CDS)

ATGTTGTCAGATGAGCTCATGAATTGTGTTGGCTTTGACGAAAATTCAATTTCAGATTTTTCCAAGAGAATATTTGATATGAAGAGTGATAGGATGAAGAGTGGGGTTGTATTTCCTCAAAGAAGCAAGAAACTCCAGGATATTGATCATTGCACCATAAAAAATGAGGATATAAAAGTTATCGATCCACCTTCGGTCAAGGAAGCAAATTTTGTCCCAGAGAGAACGCAGAAACCGATGTTGGGATTGCTTAATTGGCTGAAAGATGTTGCAAGAAACCCTTGTGATCCATCAATATGTTCACTACCAGAAAAGTCAAAATGGAAATCACATGGAAATGAAGAGGTTTGGAAACAAGTTTTGCTAGTTCGAGAGGAATTTTTTGTAAAAAGACGAGTCGATGCAAGTAGCGAGCAATCTTTCTTGCAGAGAAATCAGAGGATGCATCCTTGTATGTATGATAACGATACGGTTCCAATTTACAATCTTAGGAAGAGATTAAGCATTGACAAGAAGGTTCAATCTCAAGAACCTGTGTCTAAATCAAGTGATTCTTCACCCTCAGATTCATCAGATGAGTACAAGCCCGTTCTCCTAGGGCCAGATTATCAAGCTCAGATACCAGAATGGAATGGTGTGATATCCAACAGCAATTTGAAGTGGTTGGGAACTCAAGAATGGCCTTTAAACTTAAAGAAAGGAAGTAACAGAAATCCCGTTGAAAGGGATCCCATTGGAAAAGGAAGGCGAGATCCTTGTGGATGCTTGGACGCTGGTTCAGTTGGTTGTGTCAAATTTCACGTTGCTGAGAAAAGGCACAGACTAAAGCTAGAGTTGGGCGCTGCGTTTCTCCAATGGAGATTTGATCAGATGGGCGAAGATGTTACATTTGCTTGGAAAGTAGATGATGAGAAAAAGTTCGAGGATATAGTGACGTCGAACCCTCCATCCCTCGGGATATGTTTTTGGGATGAGATTGTTGAGTCATTCCCTTCCAGGAGCAGGGAAGATCTTGTTAGCTACTACTATAATGTCTTTCTTTTGCGTCGTAGAGGACACCAAAATCGGGTTACACCGAACAAAATCGATAGTGACGATGAATCAGAATCCGGGATTACAACGAATGGATTCGGACACAAAGTGCATAACTCACCCGGCTCCATTTTCTACTCTCCCAAGAAGCCACGGTAG

Protein sequence

MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKVIDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQVLLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVSKSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPNKIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR

Homology

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BLAST of Carg13833 vs. NCBI nr
Match: KAG7025995.1 (AT-rich interactive domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 824.3 bits (2128), Expect = 4.4e-235
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. NCBI nr
Match: XP_023514931.1 (AT-rich interactive domain-containing protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 819.7 bits (2116), Expect = 1.1e-233
Identity = 394/396 (99.49%), Postives = 395/396 (99.75%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQE VS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQESVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESESGITTNGFGH+VHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESGITTNGFGHEVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. NCBI nr
Match: XP_023514930.1 (AT-rich interactive domain-containing protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 819.7 bits (2116), Expect = 1.1e-233
Identity = 394/396 (99.49%), Postives = 395/396 (99.75%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQE VS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQESVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESESGITTNGFGH+VHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESGITTNGFGHEVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. NCBI nr
Match: XP_022964551.1 (AT-rich interactive domain-containing protein 1-like isoform X1 [Cucurbita moschata] >XP_022964552.1 AT-rich interactive domain-containing protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 819.3 bits (2115), Expect = 1.4e-233
Identity = 394/396 (99.49%), Postives = 394/396 (99.49%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSID KVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDNKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESES ITTNGFGHKVHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESRITTNGFGHKVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. NCBI nr
Match: XP_022964553.1 (AT-rich interactive domain-containing protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 819.3 bits (2115), Expect = 1.4e-233
Identity = 394/396 (99.49%), Postives = 394/396 (99.49%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSID KVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDNKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESES ITTNGFGHKVHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESRITTNGFGHKVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. ExPASy Swiss-Prot
Match: Q84JT7 (AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=ARID1 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-66
Identity = 134/312 (42.95%), Postives = 196/312 (62.82%), Query Frame = 0


Query: 56  EDIKVIDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEE 115
           E I +++  + +E +   +R ++  L  L WL DVA++PCDPS+  +P++S+W S+G+EE
Sbjct: 227 EQIMILESVT-QECSSPGKRKRECPLETLKWLSDVAKDPCDPSLGIVPDRSEWVSYGSEE 286

Query: 116 VWKQVLLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQS 175
            WKQ+LL R     +   D++ E+++ Q+ Q+MHPC+YD+     YNLR+RLS +   + 
Sbjct: 287 PWKQLLLFRAS---RTNNDSACEKTW-QKVQKMHPCLYDDSAGASYNLRERLSYEDYKRG 346

Query: 176 QEPVSKSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGS 235
           +      SD   SD  D     L+G  +QA++PEW G+   S+ KWLGT+ WPL  ++  
Sbjct: 347 K--TGNGSDIGSSDEEDR-PCALVGSKFQAKVPEWTGITPESDSKWLGTRIWPLTKEQTK 406

Query: 236 NRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDV 295
               +ERD IGKGR+DPCGC + GS+ CVKFH+  KR +LKLELG AF  W FD MGE  
Sbjct: 407 ANLLIERDRIGKGRQDPCGCHNPGSIECVKFHITAKRDKLKLELGPAFYMWCFDVMGECT 466

Query: 296 TFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQN 355
              W   + KK + ++ S+PPSL   F  +     PS+SR  +VSY+YNV LL+ R  Q+
Sbjct: 467 LQYWTDLELKKIKSLM-SSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQS 526

Query: 356 RVTPNKIDSDDE 368
           R+TP+ IDSD +
Sbjct: 527 RITPHDIDSDTD 529

[Close]

BLAST of Carg13833 vs. ExPASy Swiss-Prot
Match: Q9LDD4 (AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=ARID2 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.2e-51
Identity = 118/341 (34.60%), Postives = 172/341 (50.44%), Query Frame = 0


Query: 82  GLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQVLLVREEFFVKR-RVDASSEQS 141
           G+L WL  VA +P DP+I  +P  SKWK +   + W QV   +    V+R   +      
Sbjct: 224 GMLKWLALVATSPHDPAIGVIPHSSKWKQYNGNKCWLQVARAKNSLLVQRDNAELRYRYH 283

Query: 142 FLQRNQRM-HPCMYDNDTVPIYNLR---------------------------------KR 201
             + +Q + HP MY++D   I  LR                                 ++
Sbjct: 284 PFRGHQNIHHPSMYEDDRKSIGRLRYSIRPPNLSKHCSSSCCNGSSLVSLSKSRSTKCRK 343

Query: 202 LSIDKKVQSQEPVSKSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQE 261
           L+I    ++      S     + +    + + +G  +QAQ+ EW     +S+ KWLGT+ 
Sbjct: 344 LTIIASERAGLTAGTSRARKRNKAEIPRRCIKVGHQHQAQVDEWTESGVDSDSKWLGTRI 403

Query: 262 WPLNLKKGSNRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQW 321
           WP    +  ++  +  D +GKGR D C C  +G V C + H+AEKR  LK ELG  F  W
Sbjct: 404 WPPENSEALDQT-LGNDLVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFFHW 463

Query: 322 RFDQMGEDVTFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVF 381
           RF+QMGE+V   W  ++EK+F+D++ ++P S    FW    ++FP + RE+LVSYY+NVF
Sbjct: 464 RFNQMGEEVCLRWTEEEEKRFKDMIIADPQS----FWTNAAKNFPKKKREELVSYYFNVF 523

Query: 382 LLRRRGHQNRVTPNKIDSDDESESGITTNGFGHKVHNSPGS 388
           L+ RR +QNRVTP  IDSDDE   G     FG     S GS
Sbjct: 524 LINRRRYQNRVTPKSIDSDDEGAFGSVGGSFGRDAVTSSGS 559

[Close]

BLAST of Carg13833 vs. ExPASy TrEMBL
Match: A0A6J1HI37 (AT-rich interactive domain-containing protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464543 PE=4 SV=1)

HSP 1 Score: 819.3 bits (2115), Expect = 6.9e-234
Identity = 394/396 (99.49%), Postives = 394/396 (99.49%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSID KVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDNKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESES ITTNGFGHKVHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESRITTNGFGHKVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. ExPASy TrEMBL
Match: A0A6J1HL65 (AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464543 PE=4 SV=1)

HSP 1 Score: 819.3 bits (2115), Expect = 6.9e-234
Identity = 394/396 (99.49%), Postives = 394/396 (99.49%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSID KVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDNKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESES ITTNGFGHKVHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESRITTNGFGHKVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. ExPASy TrEMBL
Match: A0A6J1KC33 (AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494251 PE=4 SV=1)

HSP 1 Score: 818.9 bits (2114), Expect = 9.0e-234
Identity = 394/396 (99.49%), Postives = 395/396 (99.75%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFV ERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVLERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESESGITTNGFGH+VHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESGITTNGFGHEVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. ExPASy TrEMBL
Match: A0A6J1KEF5 (AT-rich interactive domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494251 PE=4 SV=1)

HSP 1 Score: 818.9 bits (2114), Expect = 9.0e-234
Identity = 394/396 (99.49%), Postives = 395/396 (99.75%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFV ERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVLERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESESGITTNGFGH+VHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESGITTNGFGHEVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. ExPASy TrEMBL
Match: A0A6J1KL28 (AT-rich interactive domain-containing protein 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111494251 PE=4 SV=1)

HSP 1 Score: 818.9 bits (2114), Expect = 9.0e-234
Identity = 394/396 (99.49%), Postives = 395/396 (99.75%), Query Frame = 0


Query: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60
           MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV
Sbjct: 1   MLSDELMNCVGFDENSISDFSKRIFDMKSDRMKSGVVFPQRSKKLQDIDHCTIKNEDIKV 60

Query: 61  IDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120
           IDPPSVKEANFV ERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV
Sbjct: 61  IDPPSVKEANFVLERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQV 120

Query: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180
           LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS
Sbjct: 121 LLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQSQEPVS 180

Query: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240
           KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV
Sbjct: 181 KSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGSNRNPV 240

Query: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300
           ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK
Sbjct: 241 ERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDVTFAWK 300

Query: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360
           VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN
Sbjct: 301 VDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQNRVTPN 360

Query: 361 KIDSDDESESGITTNGFGHKVHNSPGSIFYSPKKPR 397
           KIDSDDESESGITTNGFGH+VHNSPGSIFYSPKKPR
Sbjct: 361 KIDSDDESESGITTNGFGHEVHNSPGSIFYSPKKPR 396

[Close]

BLAST of Carg13833 vs. TAIR 10
Match: AT2G46040.1 (ARID/BRIGHT DNA-binding domain;ELM2 domain protein )

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-67
Identity = 134/312 (42.95%), Postives = 196/312 (62.82%), Query Frame = 0


Query: 56  EDIKVIDPPSVKEANFVPERTQKPMLGLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEE 115
           E I +++  + +E +   +R ++  L  L WL DVA++PCDPS+  +P++S+W S+G+EE
Sbjct: 227 EQIMILESVT-QECSSPGKRKRECPLETLKWLSDVAKDPCDPSLGIVPDRSEWVSYGSEE 286

Query: 116 VWKQVLLVREEFFVKRRVDASSEQSFLQRNQRMHPCMYDNDTVPIYNLRKRLSIDKKVQS 175
            WKQ+LL R     +   D++ E+++ Q+ Q+MHPC+YD+     YNLR+RLS +   + 
Sbjct: 287 PWKQLLLFRAS---RTNNDSACEKTW-QKVQKMHPCLYDDSAGASYNLRERLSYEDYKRG 346

Query: 176 QEPVSKSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQEWPLNLKKGS 235
           +      SD   SD  D     L+G  +QA++PEW G+   S+ KWLGT+ WPL  ++  
Sbjct: 347 K--TGNGSDIGSSDEEDR-PCALVGSKFQAKVPEWTGITPESDSKWLGTRIWPLTKEQTK 406

Query: 236 NRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWRFDQMGEDV 295
               +ERD IGKGR+DPCGC + GS+ CVKFH+  KR +LKLELG AF  W FD MGE  
Sbjct: 407 ANLLIERDRIGKGRQDPCGCHNPGSIECVKFHITAKRDKLKLELGPAFYMWCFDVMGECT 466

Query: 296 TFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVFLLRRRGHQN 355
              W   + KK + ++ S+PPSL   F  +     PS+SR  +VSY+YNV LL+ R  Q+
Sbjct: 467 LQYWTDLELKKIKSLM-SSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQS 526

Query: 356 RVTPNKIDSDDE 368
           R+TP+ IDSD +
Sbjct: 527 RITPHDIDSDTD 529

[Close]

BLAST of Carg13833 vs. TAIR 10
Match: AT4G11400.1 (ARID/BRIGHT DNA-binding domain;ELM2 domain protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-52
Identity = 118/341 (34.60%), Postives = 172/341 (50.44%), Query Frame = 0


Query: 82  GLLNWLKDVARNPCDPSICSLPEKSKWKSHGNEEVWKQVLLVREEFFVKR-RVDASSEQS 141
           G+L WL  VA +P DP+I  +P  SKWK +   + W QV   +    V+R   +      
Sbjct: 224 GMLKWLALVATSPHDPAIGVIPHSSKWKQYNGNKCWLQVARAKNSLLVQRDNAELRYRYH 283

Query: 142 FLQRNQRM-HPCMYDNDTVPIYNLR---------------------------------KR 201
             + +Q + HP MY++D   I  LR                                 ++
Sbjct: 284 PFRGHQNIHHPSMYEDDRKSIGRLRYSIRPPNLSKHCSSSCCNGSSLVSLSKSRSTKCRK 343

Query: 202 LSIDKKVQSQEPVSKSSDSSPSDSSDEYKPVLLGPDYQAQIPEWNGVISNSNLKWLGTQE 261
           L+I    ++      S     + +    + + +G  +QAQ+ EW     +S+ KWLGT+ 
Sbjct: 344 LTIIASERAGLTAGTSRARKRNKAEIPRRCIKVGHQHQAQVDEWTESGVDSDSKWLGTRI 403

Query: 262 WPLNLKKGSNRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQW 321
           WP    +  ++  +  D +GKGR D C C  +G V C + H+AEKR  LK ELG  F  W
Sbjct: 404 WPPENSEALDQT-LGNDLVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFFHW 463

Query: 322 RFDQMGEDVTFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVF 381
           RF+QMGE+V   W  ++EK+F+D++ ++P S    FW    ++FP + RE+LVSYY+NVF
Sbjct: 464 RFNQMGEEVCLRWTEEEEKRFKDMIIADPQS----FWTNAAKNFPKKKREELVSYYFNVF 523

Query: 382 LLRRRGHQNRVTPNKIDSDDESESGITTNGFGHKVHNSPGS 388
           L+ RR +QNRVTP  IDSDDE   G     FG     S GS
Sbjct: 524 LINRRRYQNRVTPKSIDSDDEGAFGSVGGSFGRDAVTSSGS 559

[Close]

BLAST of Carg13833 vs. TAIR 10
Match: AT5G04110.1 (DNA GYRASE B3 )

HSP 1 Score: 139.0 bits (349), Expect = 8.0e-33
Identity = 77/201 (38.31%), Postives = 112/201 (55.72%), Query Frame = 0


Query: 180 SKSSDSSPSDSSDEYKPVL-LGPDYQAQIPEW---------NGVISNSN-LKWLGTQEWP 239
           +K+S    +  S++ +P + +GP +QA+IP W          G   +SN L+WLGT  WP
Sbjct: 343 NKTSKDVITHGSNKTRPAIPIGPRFQAEIPVWIAPTKKGKFYGSPGDSNTLRWLGTGVWP 402

Query: 240 -LNLKKGSNRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHRLKLELGAAFLQWR 299
             +LKK      V    +G+GR D C C    S  C+K H  E +  L+ E+  AF  W 
Sbjct: 403 TYSLKK-----TVHSKKVGEGRSDSCSCASPRSTNCIKRHKKEAQELLEKEINRAFSTWE 462

Query: 300 FDQMGEDVTF-AWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSRSREDLVSYYYNVF 359
           FDQMGE++   +W   +E++FE +V  NP S    FW+    +FP +S++DL+SYYYNVF
Sbjct: 463 FDQMGEEIVLKSWTAKEERRFEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVF 522

Query: 360 LLRRRGHQNRVTPNKIDSDDE 368
           L++R         N IDSDD+
Sbjct: 523 LIKRMRLLKSSAANNIDSDDD 538

[Close]

BLAST of Carg13833 vs. TAIR 10
Match: AT2G03470.1 (ELM2 domain-containing protein )

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-27
Identity = 76/214 (35.51%), Postives = 112/214 (52.34%), Query Frame = 0


Query: 175 SQEPVSKSSDSSPSDSSDEY------------------KPVLLGPDYQAQIPEW--NGVI 234
           SQ  V+  SD S   S  ++                  K VL+G ++QA IPE+    ++
Sbjct: 83  SQSGVTTQSDLSHQSSGSDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEIL 142

Query: 235 SNSNLKWLGTQEWPLNLKKGSNRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHR 294
             S  +     E  L  K     +  +    G+GR++ C CLD GS+ CV+ H+ E R  
Sbjct: 143 DQSEARTKEDLEGKLMRKCVIPMSDSDLCGTGQGRKE-CLCLDKGSIRCVRRHIIEARES 202

Query: 295 LKLELG-AAFLQWRFDQMGEDVTFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSR 354
           L   +G   F++    +MGE+V   W  ++E  F  +V SNP S G  FW ++  +FPSR
Sbjct: 203 LVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSR 262

Query: 355 SREDLVSYYYNVFLLRRRGHQNRVTPNKIDSDDE 368
           + ++LVSYY+NVF+LRRRG QNR     +DSDD+
Sbjct: 263 TMKELVSYYFNVFILRRRGIQNRFKALDVDSDDD 295

[Close]

BLAST of Carg13833 vs. TAIR 10
Match: AT2G03470.2 (ELM2 domain-containing protein )

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-27
Identity = 76/214 (35.51%), Postives = 112/214 (52.34%), Query Frame = 0


Query: 175 SQEPVSKSSDSSPSDSSDEY------------------KPVLLGPDYQAQIPEW--NGVI 234
           SQ  V+  SD S   S  ++                  K VL+G ++QA IPE+    ++
Sbjct: 82  SQSGVTTQSDLSHQSSGSDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEIL 141

Query: 235 SNSNLKWLGTQEWPLNLKKGSNRNPVERDPIGKGRRDPCGCLDAGSVGCVKFHVAEKRHR 294
             S  +     E  L  K     +  +    G+GR++ C CLD GS+ CV+ H+ E R  
Sbjct: 142 DQSEARTKEDLEGKLMRKCVIPMSDSDLCGTGQGRKE-CLCLDKGSIRCVRRHIIEARES 201

Query: 295 LKLELG-AAFLQWRFDQMGEDVTFAWKVDDEKKFEDIVTSNPPSLGICFWDEIVESFPSR 354
           L   +G   F++    +MGE+V   W  ++E  F  +V SNP S G  FW ++  +FPSR
Sbjct: 202 LVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSR 261

Query: 355 SREDLVSYYYNVFLLRRRGHQNRVTPNKIDSDDE 368
           + ++LVSYY+NVF+LRRRG QNR     +DSDD+
Sbjct: 262 TMKELVSYYFNVFILRRRGIQNRFKALDVDSDDD 294

The following BLAST results are available for this feature:

BLAST of Carg13833 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025995.1	4.4e-235	100.00	AT-rich interactive domain-containing protein 1, partial [Cucurbita argyrosperma...	[more]
XP_023514931.1	1.1e-233	99.49	AT-rich interactive domain-containing protein 1-like isoform X2 [Cucurbita pepo ...	[more]
XP_023514930.1	1.1e-233	99.49	AT-rich interactive domain-containing protein 1-like isoform X1 [Cucurbita pepo ...	[more]
XP_022964551.1	1.4e-233	99.49	AT-rich interactive domain-containing protein 1-like isoform X1 [Cucurbita mosch...	[more]
XP_022964553.1	1.4e-233	99.49	AT-rich interactive domain-containing protein 1-like isoform X2 [Cucurbita mosch...	[more]

BLAST of Carg13833 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JT7	3.1e-66	42.95	AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LDD4	2.2e-51	34.60	AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg13833 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI37	6.9e-234	99.49	AT-rich interactive domain-containing protein 1-like isoform X1 OS=Cucurbita mos...	[more]
A0A6J1HL65	6.9e-234	99.49	AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucurbita mos...	[more]
A0A6J1KC33	9.0e-234	99.49	AT-rich interactive domain-containing protein 1-like isoform X2 OS=Cucurbita max...	[more]
A0A6J1KEF5	9.0e-234	99.49	AT-rich interactive domain-containing protein 1-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1KL28	9.0e-234	99.49	AT-rich interactive domain-containing protein 1-like isoform X3 OS=Cucurbita max...	[more]

BLAST of Carg13833 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46040.1	2.2e-67	42.95	ARID/BRIGHT DNA-binding domain;ELM2 domain protein	[more]
AT4G11400.1	1.5e-52	34.60	ARID/BRIGHT DNA-binding domain;ELM2 domain protein	[more]
AT5G04110.1	8.0e-33	38.31	DNA GYRASE B3	[more]
AT2G03470.1	5.0e-27	35.51	ELM2 domain-containing protein	[more]
AT2G03470.2	5.0e-27	35.51	ELM2 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..396
None	No IPR available	PANTHER	PTHR46410:SF1	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1	coord: 42..395
None	No IPR available	PANTHER	PTHR46410	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	coord: 42..395
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 298..346 e-value: 1.32458E-4 score: 37.1698

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13833-RA	Carg13833-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus