Carg13827 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCACACCCCGCATATCTGGGTGCACCGCCTTTGTTCATGTTCACAACACCTAAAGAGGTAAACTTGATCCAAGTGCAAGAAAATGTGTCTATTTAGGATTTTTTTTTACCAAAGGGGACAAAAGTTATAATCCCACATCTAGGAAGTCTTACACTTCAATTGATGTAACTTTCACAGAACATAAACCGTTTTTCTATAAGGCCTCTCTTCAAGGGGAGAATATAGAGATTGAAGAGAGTTCTGGGAAACTATTGAGCCCCTAGACACACCAAATAACCATCATGCAAAACCAGTTATTGAGTCCGCACCTTCTATCGATGAGCCCTTTCCTACTACTATAGAGCTACCAATTGAACCATATGTTCCACCTCCATTACCAAATCCGTTGTTCTCTCAGGTATATGCTAGAAGGAAAGTCATTTCAGAACCAATACAAGTCCAAACATCTGACTCTACTCACAATGAAGATGCAACACAGGTACCAATAGATAATAGACCAACATCCAACTCTACCCATAATGAAGATGCAACACAGGTATCAATAAATGACAGAGCCATAGCTCTCCGGAAACCCACTGGAGAATGCACAAAACGACCTTTATACCCCCTAGCAAACTATATCTCTCTTGAAAGGCTATCCTCACTACACAAA ATGGCCTCACACCCCGCATATCTGGGTGCACCGCCTTTGTTCATGTTCACAACACCTAAAGAGGTAAACTTGATCCAAGTGCAAGAAAATGTATATGCTAGAAGGAAAGTCATTTCAGAACCAATACAAGTCCAAACATCTGACTCTACTCACAATGAAGATGCAACACAGGTACCAATAGATAATAGACCAACATCCAACTCTACCCATAATGAAGATGCAACACAGGTATCAATAAATGACAGAGCCATAGCTCTCCGGAAACCCACTGGAGAATGCACAAAACGACCTTTATACCCCCTAGCAAACTATATCTCTCTTGAAAGGCTATCCTCACTACACAAA ATGGCCTCACACCCCGCATATCTGGGTGCACCGCCTTTGTTCATGTTCACAACACCTAAAGAGGTAAACTTGATCCAAGTGCAAGAAAATGTATATGCTAGAAGGAAAGTCATTTCAGAACCAATACAAGTCCAAACATCTGACTCTACTCACAATGAAGATGCAACACAGGTACCAATAGATAATAGACCAACATCCAACTCTACCCATAATGAAGATGCAACACAGGTATCAATAAATGACAGAGCCATAGCTCTCCGGAAACCCACTGGAGAATGCACAAAACGACCTTTATACCCCCTAGCAAACTATATCTCTCTTGAAAGGCTATCCTCACTACACAAA MASHPAYLGAPPLFMFTTPKEVNLIQVQENVYARRKVISEPIQVQTSDSTHNEDATQVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK Homology
BLAST of Carg13827 vs. NCBI nr
Match: KAG7013828.1 (hypothetical protein SDJN02_23997, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Carg13827 vs. NCBI nr
Match: RVW86031.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]) HSP 1 Score: 64.3 bits (155), Expect = 7.8e-07 Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg13827 vs. NCBI nr
Match: RVW52780.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Carg13827 vs. NCBI nr
Match: RVW27716.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06 Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg13827 vs. NCBI nr
Match: RVW90643.1 (Copia protein [Vitis vinifera]) HSP 1 Score: 62.4 bits (150), Expect = 3.0e-06 Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 0
BLAST of Carg13827 vs. ExPASy TrEMBL
Match: A0A438HNM6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2787 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07 Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg13827 vs. ExPASy TrEMBL
Match: A0A438EYF5 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1549 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 4.9e-07 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Carg13827 vs. ExPASy TrEMBL
Match: A0A438CWZ0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1129 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 6.4e-07 Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg13827 vs. ExPASy TrEMBL
Match: A0A438I1Q1 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_181 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06 Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 0
BLAST of Carg13827 vs. ExPASy TrEMBL
Match: A0A438DIH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3549 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06 Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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