Carg13368 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13368
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger protein GIS3-like
Location	Carg_Chr08: 2352731 .. 2353255 (+)
RNA-Seq Expression	Carg13368
Synteny	Carg13368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATCAAAATCCCTCCTCCATTTTGAAACTATTTGGGTTCCCACTGGTGGAACACGACGACCTTCCGCCGGCCACACCCGACGGTGGCGGCGGCGACGACACCAACTCCGACTACGACAGAAAATTCCGGTGCCAATTCTGCCACCGGGTTTTCGCCAATTCGCAAGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAGAGGGCCAAACGCGCCCTTTATTTCCACGCCTCAGACCACCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCACTCCGACCGCCGCCATTTTACTCTAGCGTTTTTCCGGCCAACATTGGTGGTGGTCATCGTGGTTATAGATTTCTGCCTCGGAGCGAGAACGGTTACTTCACGGCGGCGTACGGCGGCGTATCGGCGGGTTCGGGGCGGTGGATGTTTGGGAATTCCGGGGAAGGAGGTGAAAAGGGATCAACAGATGATGTGGGTGTTGTTGATCTTCATCTTAAACTTTCCCCATCTGGTTTGTGA

mRNA sequence

ATGTCCAATCAAAATCCCTCCTCCATTTTGAAACTATTTGGGTTCCCACTGGTGGAACACGACGACCTTCCGCCGGCCACACCCGACGGTGGCGGCGGCGACGACACCAACTCCGACTACGACAGAAAATTCCGGTGCCAATTCTGCCACCGGGTTTTCGCCAATTCGCAAGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAGAGGGCCAAACGCGCCCTTTATTTCCACGCCTCAGACCACCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCACTCCGACCGCCGCCATTTTACTCTAGCGTTTTTCCGGCCAACATTGGTGGTGGTCATCGTGGTTATAGATTTCTGCCTCGGAGCGAGAACGGTTACTTCACGGCGGCGTACGGCGGCGTATCGGCGGGTTCGGGGCGGTGGATGTTTGGGAATTCCGGGGAAGGAGGTGAAAAGGGATCAACAGATGATGTGGGTGTTGTTGATCTTCATCTTAAACTTTCCCCATCTGGTTTGTGA

Coding sequence (CDS)

ATGTCCAATCAAAATCCCTCCTCCATTTTGAAACTATTTGGGTTCCCACTGGTGGAACACGACGACCTTCCGCCGGCCACACCCGACGGTGGCGGCGGCGACGACACCAACTCCGACTACGACAGAAAATTCCGGTGCCAATTCTGCCACCGGGTTTTCGCCAATTCGCAAGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAGAGGGCCAAACGCGCCCTTTATTTCCACGCCTCAGACCACCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCACTCCGACCGCCGCCATTTTACTCTAGCGTTTTTCCGGCCAACATTGGTGGTGGTCATCGTGGTTATAGATTTCTGCCTCGGAGCGAGAACGGTTACTTCACGGCGGCGTACGGCGGCGTATCGGCGGGTTCGGGGCGGTGGATGTTTGGGAATTCCGGGGAAGGAGGTGAAAAGGGATCAACAGATGATGTGGGTGTTGTTGATCTTCATCTTAAACTTTCCCCATCTGGTTTGTGA

Protein sequence

MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALGGHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRFLPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL

Homology

[Close]

BLAST of Carg13368 vs. NCBI nr
Match: KAG7025578.1 (Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.8 bits (917), Expect = 5.2e-95
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60
           MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG
Sbjct: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRF 120
           GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRF
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRF 120

Query: 121 LPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 175
           LPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL
Sbjct: 121 LPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 174

[Close]

BLAST of Carg13368 vs. NCBI nr
Match: XP_023004876.1 (zinc finger protein GIS3-like [Cucurbita maxima])

HSP 1 Score: 328.6 bits (841), Expect = 3.4e-86
Identity = 162/176 (92.05%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60
           MSNQNPS+ILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG
Sbjct: 1   MSNQNPSTILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANI--GGGHRGY 120
           GHQNAHKRERQRAKRALYFHASDHHLAA       ALRPPPFYSSVFPA+I  GGGHRGY
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAA-------ALRPPPFYSSVFPAHIGGGGGHRGY 120

Query: 121 RFLPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 175
           RFLPRS++GYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDV VVDLHLKLSPSGL
Sbjct: 121 RFLPRSDHGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVDVVDLHLKLSPSGL 169

[Close]

BLAST of Carg13368 vs. NCBI nr
Match: XP_023514545.1 (zinc finger protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 9.8e-86
Identity = 162/176 (92.05%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60
           MSNQNPSSILKLFG PLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG
Sbjct: 1   MSNQNPSSILKLFGVPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANI--GGGHRGY 120
           GHQNAHKRERQRAKRALYFHASDHHLAA       ALRP PFYSSVFPANI  GGGHRGY
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAA-------ALRPLPFYSSVFPANIGGGGGHRGY 120

Query: 121 RFLPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 175
           RF+PRS+NGYFTAAYGGVS GSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL
Sbjct: 121 RFVPRSDNGYFTAAYGGVSVGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 169

[Close]

BLAST of Carg13368 vs. NCBI nr
Match: KAG6593224.1 (hypothetical protein SDJN03_12700, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-58
Identity = 121/174 (69.54%), Postives = 126/174 (72.41%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60
           MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHR   +     
Sbjct: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRTTTSPPPPP 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRF 120
              ++ +R                                 F  + FPANIGGGHRGYRF
Sbjct: 61  PPSHSDRRH--------------------------------FTQAFFPANIGGGHRGYRF 120

Query: 121 LPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 175
           LPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL
Sbjct: 121 LPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 142

[Close]

BLAST of Carg13368 vs. NCBI nr
Match: XP_008451655.1 (PREDICTED: zinc finger protein 6-like [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56
Identity = 131/184 (71.20%), Postives = 136/184 (73.91%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDG-GGGDDT--NSDYDRKFRCQFCHRVFANSQ 60
           MSN NPSSILKLFGFPLVEHDD PP TPDG GGG DT  NSD DRKFRCQFC RVFANSQ
Sbjct: 1   MSNHNPSSILKLFGFPLVEHDDNPPETPDGVGGGADTTINSDDDRKFRCQFCRRVFANSQ 60

Query: 61  ALGGHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIG--GGH 120
           ALGGHQNAHKRERQRAKRALYFHA+             ALRPP  YSSVFP+N G  GG 
Sbjct: 61  ALGGHQNAHKRERQRAKRALYFHAA-------------ALRPPSLYSSVFPSNFGGDGGG 120

Query: 121 RGYRFLPRSENGYF--TAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVG-----VVDLHLK 173
            G R LPR+ NGYF  TAAYGGVSA SGRWMFGNS EG  + S   +G      VDLHLK
Sbjct: 121 GGSRILPRNGNGYFAETAAYGGVSASSGRWMFGNSSEGKMENSGCKLGGEKGLCVDLHLK 171

[Close]

BLAST of Carg13368 vs. ExPASy Swiss-Prot
Match: Q9C9H1 (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-11
Identity = 75/240 (31.25%), Postives = 104/240 (43.33%), Query Frame = 0


Query: 2   SNQNPSSILKLFGFPLVEHDDLP------------------PATPDGGGGDDTNS----- 61
           S++  +S LKLFGF +   +D                    PA   G  G    S     
Sbjct: 7   SSKTTTSRLKLFGFSVDGEEDFSDQSVKTNLSSVSPERGEFPAGSSGRSGGGVRSRGGGG 66

Query: 62  -DYDRKFRCQFCHRVFANSQALGGHQNAHKRERQRAKRA---LYFHASDHHLAAAAAAAA 121
              +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA      +A+ +   A +A+  
Sbjct: 67  GGGERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSNAGSASQF 126

Query: 122 V------ALRPPP--FYSSVFPANIGGGHRGYRFLPRSENGYFTAAY--------GGVSA 174
           +      A  PPP    SS  P  +GG    + +LPR        ++        GG  A
Sbjct: 127 LRNPIVSAFAPPPHLLSSSAVPQPMGG---PWMYLPRVSPSQLHVSHGCVIQDGSGGAGA 186

[Close]

BLAST of Carg13368 vs. ExPASy Swiss-Prot
Match: Q9FG05 (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 10  LKLFGFPL-VEHDDLPPATPDGGGGDDTNSD-YDRKFRCQFCHRVFANSQALGGHQNAHK 69
           ++LFGF     H++           +    D  +++F+C +C R F  SQALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 70  RERQRAKR-------ALYFHASDHHLAAA 90
           RERQ+ KR       A +FH   +H+AA+
Sbjct: 79  RERQQTKRFNLHSNAAAFFHRQQNHIAAS 107

[Close]

BLAST of Carg13368 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 63/195 (32.31%), Postives = 83/195 (42.56%), Query Frame = 0


Query: 7   SSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALGGHQNAH 66
           +S LKLFG  L+E   +   + +   G  + S+  RK+ CQ+C R FANSQALGGHQNAH
Sbjct: 5   TSSLKLFGINLLETTSVQNQSSEPRPGSGSGSE-SRKYECQYCCREFANSQALGGHQNAH 64

Query: 67  KRERQRAKRALY-----------FHASDHHLAAAAAAAAVAL---RPPPFYSSVFPANIG 126
           K+ERQ  KRA             FH   + L +A A     L    PPP       ++  
Sbjct: 65  KKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPPHMMLSPSSSSS 124

Query: 127 GGHRGYRFLPRSENGYFTAAYG----------------GVSAGSGRWMFGNSGEGGEKGS 172
               G     ++  GYF    G                G S    R   G+S        
Sbjct: 125 KWLYGEHMSSQNAVGYFHGGRGLYGGGMESMAGEVKTHGGSLPEMRRFAGDSDRSSGIKL 184

[Close]

BLAST of Carg13368 vs. ExPASy Swiss-Prot
Match: Q84WI0 (Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 46/115 (40.00%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 30  GGGGDDTNS-DYDRKFRCQFCHRVFANSQALGGHQNAHKRERQRAKRAL--YFHASDHHL 89
           G    D NS  ++R+F C +C R F  SQALGGHQNAHKRERQ AKR +  YF+  D++ 
Sbjct: 76  GDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNN- 135

Query: 90  AAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRFLPRSENGYFTAA--YGGVSAG 140
                         P+               YR  P   NG  TAA  YGG S+G
Sbjct: 136 --------------PY--------------SYRHYPSWTNGPLTAARSYGGFSSG 161

[Close]

BLAST of Carg13368 vs. ExPASy Swiss-Prot
Match: Q39264 (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 2  SNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNS---DYDRKFRCQFCHRVFANSQA 61
          S  +    +KLFGF L+     P  T        TN+      ++  CQ+C + FANSQA
Sbjct: 15 SGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQA 74

Query: 62 LGGHQNAHKRERQRAKR 76
          LGGHQNAHK+ER + KR
Sbjct: 75 LGGHQNAHKKERLKKKR 91

[Close]

BLAST of Carg13368 vs. ExPASy TrEMBL
Match: A0A6J1KTC7 (zinc finger protein GIS3-like OS=Cucurbita maxima OX=3661 GN=LOC111498055 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 162/176 (92.05%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60
           MSNQNPS+ILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG
Sbjct: 1   MSNQNPSTILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANI--GGGHRGY 120
           GHQNAHKRERQRAKRALYFHASDHHLAA       ALRPPPFYSSVFPA+I  GGGHRGY
Sbjct: 61  GHQNAHKRERQRAKRALYFHASDHHLAA-------ALRPPPFYSSVFPAHIGGGGGHRGY 120

Query: 121 RFLPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPSGL 175
           RFLPRS++GYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDV VVDLHLKLSPSGL
Sbjct: 121 RFLPRSDHGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVDVVDLHLKLSPSGL 169

[Close]

BLAST of Carg13368 vs. ExPASy TrEMBL
Match: A0A1S3BSU1 (zinc finger protein 6-like OS=Cucumis melo OX=3656 GN=LOC103492887 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.0e-56
Identity = 131/184 (71.20%), Postives = 136/184 (73.91%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDG-GGGDDT--NSDYDRKFRCQFCHRVFANSQ 60
           MSN NPSSILKLFGFPLVEHDD PP TPDG GGG DT  NSD DRKFRCQFC RVFANSQ
Sbjct: 1   MSNHNPSSILKLFGFPLVEHDDNPPETPDGVGGGADTTINSDDDRKFRCQFCRRVFANSQ 60

Query: 61  ALGGHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIG--GGH 120
           ALGGHQNAHKRERQRAKRALYFHA+             ALRPP  YSSVFP+N G  GG 
Sbjct: 61  ALGGHQNAHKRERQRAKRALYFHAA-------------ALRPPSLYSSVFPSNFGGDGGG 120

Query: 121 RGYRFLPRSENGYF--TAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVG-----VVDLHLK 173
            G R LPR+ NGYF  TAAYGGVSA SGRWMFGNS EG  + S   +G      VDLHLK
Sbjct: 121 GGSRILPRNGNGYFAETAAYGGVSASSGRWMFGNSSEGKMENSGCKLGGEKGLCVDLHLK 171

[Close]

BLAST of Carg13368 vs. ExPASy TrEMBL
Match: A0A5D3D1T3 (Zinc finger protein 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001500 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.3e-56
Identity = 131/187 (70.05%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDG-GGGDDT--NSDYDRKFRCQFCHRVFANSQ 60
           MSN NPSSILKLFGFPLVEHDD PP TPDG GGG DT  NSD DRKFRCQFC RVFANSQ
Sbjct: 1   MSNHNPSSILKLFGFPLVEHDDNPPETPDGVGGGADTTINSDDDRKFRCQFCRRVFANSQ 60

Query: 61  ALGGHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANI-----G 120
           ALGGHQNAHKRERQRAKRALYFHA+             ALRPP  YSSVFP+N      G
Sbjct: 61  ALGGHQNAHKRERQRAKRALYFHAA-------------ALRPPSLYSSVFPSNFGGDGGG 120

Query: 121 GGHRGYRFLPRSENGYF--TAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVG-----VVDL 173
           GG  G R LPR+ NGYF  TAAYGGVSA SGRWMFGNS EG  + S   +G      VDL
Sbjct: 121 GGGGGSRILPRNGNGYFAETAAYGGVSASSGRWMFGNSSEGKMENSGCKLGGEKGLCVDL 174

[Close]

BLAST of Carg13368 vs. ExPASy TrEMBL
Match: A0A0A0K5R1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G406990 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 9.6e-55
Identity = 126/182 (69.23%), Postives = 132/182 (72.53%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTN-SDYDRKFRCQFCHRVFANSQAL 60
           MSN NPSSILKLFGFPLVEHDD PP TPDG GG DT  S+ DRKFRCQFC RVFANSQAL
Sbjct: 1   MSNHNPSSILKLFGFPLVEHDDNPPETPDGAGGADTTISEDDRKFRCQFCRRVFANSQAL 60

Query: 61  GGHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANIGGGHRGYR 120
           GGHQNAHKRERQRAKRALYFHA+             ALRPP  YSSVFP+NIGG     R
Sbjct: 61  GGHQNAHKRERQRAKRALYFHAA-------------ALRPPSLYSSVFPSNIGGDGGASR 120

Query: 121 FLPR--SENGYF--TAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVG-----VVDLHLKLS 173
            L R  + NGYF  TAAYGGVSA SGRWMFGNS EG  + S   +G      VDLHLKLS
Sbjct: 121 ILHRNNNSNGYFTETAAYGGVSASSGRWMFGNSSEGNMENSGCKLGGEKGLCVDLHLKLS 169

[Close]

BLAST of Carg13368 vs. ExPASy TrEMBL
Match: A0A6J1DIE9 (zinc finger protein GIS3-like OS=Momordica charantia OX=3673 GN=LOC111021368 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.3e-53
Identity = 123/178 (69.10%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MSNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALG 60
           MSNQNPSSILKLFGFPLV+HDD+ P   DG     TNSD DRKFRCQFC RVFANSQALG
Sbjct: 1   MSNQNPSSILKLFGFPLVDHDDVKPERSDG-----TNSDDDRKFRCQFCRRVFANSQALG 60

Query: 61  GHQNAHKRERQRAKRALYFHASDHHLAAAAAAAAVALRPPPFYSSVFPANI----GGGHR 120
           GHQNAHKRERQRAKRALYFH +     A  +  +    P P YS VF  NI    GGG  
Sbjct: 61  GHQNAHKRERQRAKRALYFHTAH----ALRSPPSPPPPPQPLYSRVFAPNIDVVGGGGGV 120

Query: 121 G--YRFLPRSENGYFTAAYGGVSAGSGRWMFGNSGEGGEKGSTDDVGVVDLHLKLSPS 173
           G   RFLPR  NGYF AAYG VSA SGRW+FGNS   GEKGS+D VGVVDLHLKLSPS
Sbjct: 121 GASSRFLPRISNGYFAAAYGSVSASSGRWIFGNS---GEKGSSDHVGVVDLHLKLSPS 166

[Close]

BLAST of Carg13368 vs. TAIR 10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-12
Identity = 75/240 (31.25%), Postives = 104/240 (43.33%), Query Frame = 0


Query: 2   SNQNPSSILKLFGFPLVEHDDLP------------------PATPDGGGGDDTNS----- 61
           S++  +S LKLFGF +   +D                    PA   G  G    S     
Sbjct: 7   SSKTTTSRLKLFGFSVDGEEDFSDQSVKTNLSSVSPERGEFPAGSSGRSGGGVRSRGGGG 66

Query: 62  -DYDRKFRCQFCHRVFANSQALGGHQNAHKRERQRAKRA---LYFHASDHHLAAAAAAAA 121
              +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA      +A+ +   A +A+  
Sbjct: 67  GGGERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSNAGSASQF 126

Query: 122 V------ALRPPP--FYSSVFPANIGGGHRGYRFLPRSENGYFTAAY--------GGVSA 174
           +      A  PPP    SS  P  +GG    + +LPR        ++        GG  A
Sbjct: 127 LRNPIVSAFAPPPHLLSSSAVPQPMGG---PWMYLPRVSPSQLHVSHGCVIQDGSGGAGA 186

[Close]

BLAST of Carg13368 vs. TAIR 10
Match: AT1G67030.1 (zinc finger protein 6 )

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10
Identity = 63/195 (32.31%), Postives = 83/195 (42.56%), Query Frame = 0


Query: 7   SSILKLFGFPLVEHDDLPPATPDGGGGDDTNSDYDRKFRCQFCHRVFANSQALGGHQNAH 66
           +S LKLFG  L+E   +   + +   G  + S+  RK+ CQ+C R FANSQALGGHQNAH
Sbjct: 5   TSSLKLFGINLLETTSVQNQSSEPRPGSGSGSE-SRKYECQYCCREFANSQALGGHQNAH 64

Query: 67  KRERQRAKRALY-----------FHASDHHLAAAAAAAAVAL---RPPPFYSSVFPANIG 126
           K+ERQ  KRA             FH   + L +A A     L    PPP       ++  
Sbjct: 65  KKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPPHMMLSPSSSSS 124

Query: 127 GGHRGYRFLPRSENGYFTAAYG----------------GVSAGSGRWMFGNSGEGGEKGS 172
               G     ++  GYF    G                G S    R   G+S        
Sbjct: 125 KWLYGEHMSSQNAVGYFHGGRGLYGGGMESMAGEVKTHGGSLPEMRRFAGDSDRSSGIKL 184

[Close]

BLAST of Carg13368 vs. TAIR 10
Match: AT5G06650.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 10  LKLFGFPL-VEHDDLPPATPDGGGGDDTNSD-YDRKFRCQFCHRVFANSQALGGHQNAHK 69
           ++LFGF     H++           +    D  +++F+C +C R F  SQALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 70  RERQRAKR-------ALYFHASDHHLAAA 90
           RERQ+ KR       A +FH   +H+AA+
Sbjct: 79  RERQQTKRFNLHSNAAAFFHRQQNHIAAS 107

[Close]

BLAST of Carg13368 vs. TAIR 10
Match: AT1G10480.1 (zinc finger protein 5 )

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 2  SNQNPSSILKLFGFPLVEHDDLPPATPDGGGGDDTNS---DYDRKFRCQFCHRVFANSQA 61
          S  +    +KLFGF L+     P  T        TN+      ++  CQ+C + FANSQA
Sbjct: 15 SGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQA 74

Query: 62 LGGHQNAHKRERQRAKR 76
          LGGHQNAHK+ER + KR
Sbjct: 75 LGGHQNAHKKERLKKKR 91

[Close]

BLAST of Carg13368 vs. TAIR 10
Match: AT3G58070.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 46/115 (40.00%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 30  GGGGDDTNS-DYDRKFRCQFCHRVFANSQALGGHQNAHKRERQRAKRAL--YFHASDHHL 89
           G    D NS  ++R+F C +C R F  SQALGGHQNAHKRERQ AKR +  YF+  D++ 
Sbjct: 76  GDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNN- 135

Query: 90  AAAAAAAAVALRPPPFYSSVFPANIGGGHRGYRFLPRSENGYFTAA--YGGVSAG 140
                         P+               YR  P   NG  TAA  YGG S+G
Sbjct: 136 --------------PY--------------SYRHYPSWTNGPLTAARSYGGFSSG 161

The following BLAST results are available for this feature:

BLAST of Carg13368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025578.1	5.2e-95	100.00	Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023004876.1	3.4e-86	92.05	zinc finger protein GIS3-like [Cucurbita maxima]	[more]
XP_023514545.1	9.8e-86	92.05	zinc finger protein 6-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593224.1	1.0e-58	69.54	hypothetical protein SDJN03_12700, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008451655.1	2.1e-56	71.20	PREDICTED: zinc finger protein 6-like [Cucumis melo]	[more]

BLAST of Carg13368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9H1	8.2e-11	31.25	Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1	[more]
Q9FG05	2.6e-09	39.33	Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1	[more]
Q39265	2.6e-09	32.31	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]
Q84WI0	3.4e-09	40.00	Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1	[more]
Q39264	3.4e-09	42.86	Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1	[more]

BLAST of Carg13368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTC7	1.6e-86	92.05	zinc finger protein GIS3-like OS=Cucurbita maxima OX=3661 GN=LOC111498055 PE=4 S...	[more]
A0A1S3BSU1	1.0e-56	71.20	zinc finger protein 6-like OS=Cucumis melo OX=3656 GN=LOC103492887 PE=4 SV=1	[more]
A0A5D3D1T3	2.3e-56	70.05	Zinc finger protein 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0K5R1	9.6e-55	69.23	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G406990 P...	[more]
A0A6J1DIE9	5.3e-53	69.10	zinc finger protein GIS3-like OS=Momordica charantia OX=3673 GN=LOC111021368 PE=...	[more]

BLAST of Carg13368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68360.1	5.8e-12	31.25	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G67030.1	1.9e-10	32.31	zinc finger protein 6	[more]
AT5G06650.1	1.9e-10	39.33	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G10480.1	2.4e-10	42.86	zinc finger protein 5	[more]
AT3G58070.1	2.4e-10	40.00	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 34..93 e-value: 8.7E-6 score: 27.5
None	No IPR available	PANTHER	PTHR46353:SF11	ZINC FINGER PROTEIN 6-LIKE	coord: 1..173
IPR044299	Zinc finger protein GIS3/ZFP5/ZFP6	PANTHER	PTHR46353	ZINC FINGER PROTEIN 5	coord: 1..173
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 46..66
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 44..71 score: 11.468431
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 41..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13368-RA	Carg13368-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0010090	trichome morphogenesis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding