Carg12790 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12790
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H2A
LocationCarg_Chr09: 5100382 .. 5101342 (+)
RNA-Seq ExpressionCarg12790
SyntenyCarg12790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTATTTATTGCTCTCTCTTTCGCGACCTCGCCGGAAAATTGCTTCCTATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTACAACAGATCTCAACTAATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTATGATATTTTGGAACTTTTTCCTTTTCTTTTGGTTTCTATCGCTGTGTGGGTTTTGTGAAATTGAGCACGCTGTATGGATCTAGGGTTTCGAATTTTCCCCCAATTCGTGTCCTCTTTCTCAATTTCATCATAGGCGTTTGAGAATTAGATTGATTTTCTTGCTTTTGAGATTAACTCGAAGGATTCTTGATGTTTAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCAT

mRNA sequence

GATTATTTATTGCTCTCTCTTTCGCGACCTCGCCGGAAAATTGCTTCCTATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTACAACAGATCTCAACTAATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCAT

Coding sequence (CDS)

ATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAA

Protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP
Homology
[Close]
BLAST of Carg12790 vs. NCBI nr
Match: XP_004151965.1 (histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumis melo] >XP_022139360.1 histone H2A.6-like [Momordica charantia] >XP_022937039.1 histone H2A.6-like [Cucurbita moschata] >XP_022941439.1 histone H2A.6-like [Cucurbita moschata] >XP_022976601.1 histone H2A.6-like [Cucurbita maxima] >XP_022981666.1 histone H2A.6-like [Cucurbita maxima] >XP_023521617.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_023535142.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_038896809.1 histone H2A.6 [Benincasa hispida] >KAA0046438.1 putative histone H2A.1 [Cucumis melo var. makuwa] >KAG6592014.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015223.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6607826.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024889.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of Carg12790 vs. NCBI nr
Match: XP_028761725.1 (histone H2A.6 [Prosopis alba])

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK AGGDD+
Sbjct: 121 KTGTSSKGAGGDDD 134

[Close]
BLAST of Carg12790 vs. NCBI nr
Match: KAF7822852.1 (histone H2A.6-like [Senna tora])

HSP 1 Score: 250.4 bits (638), Expect = 9.0e-63
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK AGGDD+
Sbjct: 121 KTGTSSKGAGGDDD 134

[Close]
BLAST of Carg12790 vs. NCBI nr
Match: PON55943.1 (Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK +GGDD+
Sbjct: 121 KTGTSSKASGGDDD 134

[Close]
BLAST of Carg12790 vs. NCBI nr
Match: XP_010092305.1 (histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

[Close]
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: A2YVE5 (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q84NJ4 (Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q9C681 (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-60
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: A2YMC6 (Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q6ZL42 (Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1IHB7 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1FA07 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A5A7TUA9 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A0A0LD22 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1CC40 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of Carg12790 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]
BLAST of Carg12790 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-61
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G S
Sbjct: 121 KAGAS 125

[Close]
BLAST of Carg12790 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]
BLAST of Carg12790 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]
BLAST of Carg12790 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-59
Identity = 120/132 (90.91%), Postives = 123/132 (93.18%), Query Frame = 0 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           K G S  +A  D
Sbjct: 121 KAGASKPSADED 132

The following BLAST results are available for this feature:
BLAST of Carg12790 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151965.15.6e-65100.00histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumi... [more]
XP_028761725.14.0e-6398.51histone H2A.6 [Prosopis alba][more]
KAF7822852.19.0e-6397.76histone H2A.6-like [Senna tora][more]
PON55943.11.5e-6297.76Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii][more]
XP_010092305.12.6e-6297.76histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabi... [more]
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2YVE51.5e-6091.79Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3... [more]
Q84NJ41.5e-6091.79Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 ... [more]
Q9C6812.0e-6093.18Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1[more]
A2YMC64.3e-6091.04Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3... [more]
Q6ZL424.3e-6091.04Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 ... [more]
BLAST of Carg12790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IHB72.7e-65100.00Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1[more]
A0A6J1FA072.7e-65100.00Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1[more]
A0A5A7TUA92.7e-65100.00Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE... [more]
A0A0A0LD222.7e-65100.00Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1[more]
A0A6J1CC402.7e-65100.00Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1[more]
BLAST of Carg12790 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51060.11.4e-6193.18histone H2A 10 [more]
AT5G54640.13.1e-6197.60Histone superfamily protein [more]
AT4G27230.19.0e-6196.80histone H2A 2 [more]
AT4G27230.29.0e-6196.80histone H2A 2 [more]
AT3G20670.11.7e-5990.91histone H2A 13 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 73..87
score: 78.86
coord: 59..72
score: 89.46
coord: 101..119
score: 66.52
coord: 44..59
score: 90.36
coord: 15..37
score: 72.51
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..124
e-value: 7.4E-77
score: 271.3
IPR002119Histone H2ACDDcd00074H2Acoord: 9..121
e-value: 6.62501E-69
score: 201.41
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 93..127
e-value: 5.5E-19
score: 67.6
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 13..90
e-value: 2.1E-14
score: 54.0
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..129
e-value: 7.9E-65
score: 218.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 9..125
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..132
NoneNo IPR availablePANTHERPTHR23430:SF286HISTONE H2A.6coord: 2..132
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12790-RACarg12790-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity