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Carg12790 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATTATTTATTGCTCTCTCTTTCGCGACCTCGCCGGAAAATTGCTTCCTATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTACAACAGATCTCAACTAATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTATGATATTTTGGAACTTTTTCCTTTTCTTTTGGTTTCTATCGCTGTGTGGGTTTTGTGAAATTGAGCACGCTGTATGGATCTAGGGTTTCGAATTTTCCCCCAATTCGTGTCCTCTTTCTCAATTTCATCATAGGCGTTTGAGAATTAGATTGATTTTCTTGCTTTTGAGATTAACTCGAAGGATTCTTGATGTTTAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCAT GATTATTTATTGCTCTCTCTTTCGCGACCTCGCCGGAAAATTGCTTCCTATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTACAACAGATCTCAACTAATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCAT ATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAA MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP Homology
BLAST of Carg12790 vs. NCBI nr
Match: XP_004151965.1 (histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumis melo] >XP_022139360.1 histone H2A.6-like [Momordica charantia] >XP_022937039.1 histone H2A.6-like [Cucurbita moschata] >XP_022941439.1 histone H2A.6-like [Cucurbita moschata] >XP_022976601.1 histone H2A.6-like [Cucurbita maxima] >XP_022981666.1 histone H2A.6-like [Cucurbita maxima] >XP_023521617.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_023535142.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_038896809.1 histone H2A.6 [Benincasa hispida] >KAA0046438.1 putative histone H2A.1 [Cucumis melo var. makuwa] >KAG6592014.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015223.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6607826.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024889.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg12790 vs. NCBI nr
Match: XP_028761725.1 (histone H2A.6 [Prosopis alba]) HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63 Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Carg12790 vs. NCBI nr
Match: KAF7822852.1 (histone H2A.6-like [Senna tora]) HSP 1 Score: 250.4 bits (638), Expect = 9.0e-63 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Carg12790 vs. NCBI nr
Match: PON55943.1 (Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii]) HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Carg12790 vs. NCBI nr
Match: XP_010092305.1 (histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabilis]) HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62 Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: A2YVE5 (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60 Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q84NJ4 (Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 PE=3 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60 Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q9C681 (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 2.0e-60 Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: A2YMC6 (Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60 Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q6ZL42 (Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 PE=2 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60 Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1IHB7 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1FA07 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A5A7TUA9 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE=3 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A0A0LD22 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1CC40 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg12790 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 ) HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61 Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0
BLAST of Carg12790 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein ) HSP 1 Score: 231.9 bits (590), Expect = 3.1e-61 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0
BLAST of Carg12790 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 ) HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61 Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0
BLAST of Carg12790 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 ) HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61 Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0
BLAST of Carg12790 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 ) HSP 1 Score: 226.1 bits (575), Expect = 1.7e-59 Identity = 120/132 (90.91%), Postives = 123/132 (93.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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