Carg12652 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12652
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Non-specific lipid-transfer protein
Location	Carg_Chr07: 7126083 .. 7126457 (-)
RNA-Seq Expression	Carg12652
Synteny	Carg12652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGTAGTGGCATGATCAATGTCAAGATGGGTTTGGTTGTGGCGCTTGTGTGTGGCATCATTATGGGTGGAAGGGTGAGCGAGGCGGCCGTGACATGCAACCAGGTGGTCAGCTACTTGGGTGCGTGCGTATCATATGTCACTGGTGGAGGGACGCCGTCTGCAACATGTTGCAGTGGCGTGCAGGACCTGAATAAATTGGCAAGCACAGCGGCTGACCGACAGGCCGTGTGTGGATGCTTGGAATCGCTTGTCAAGGGGGTTTCTTATAATGCTCAAACGCTTGCTAATGCTGCTGCTCTTCCGGCTAAGTGTGGCGTCAAGCTTCCCTATAAGATCGACCCACGTACCGACTGTAGCACCATTCGTTAG

mRNA sequence

ATGGCGAGTAGTGGCATGATCAATGTCAAGATGGGTTTGGTTGTGGCGCTTGTGTGTGGCATCATTATGGGTGGAAGGGTGAGCGAGGCGGCCGTGACATGCAACCAGGTGGTCAGCTACTTGGGTGCGTGCGTATCATATGTCACTGGTGGAGGGACGCCGTCTGCAACATGTTGCAGTGGCGTGCAGGACCTGAATAAATTGGCAAGCACAGCGGCTGACCGACAGGCCGTGTGTGGATGCTTGGAATCGCTTGTCAAGGGGGTTTCTTATAATGCTCAAACGCTTGCTAATGCTGCTGCTCTTCCGGCTAAGTGTGGCGTCAAGCTTCCCTATAAGATCGACCCACGTACCGACTGTAGCACCATTCGTTAG

Coding sequence (CDS)

ATGGCGAGTAGTGGCATGATCAATGTCAAGATGGGTTTGGTTGTGGCGCTTGTGTGTGGCATCATTATGGGTGGAAGGGTGAGCGAGGCGGCCGTGACATGCAACCAGGTGGTCAGCTACTTGGGTGCGTGCGTATCATATGTCACTGGTGGAGGGACGCCGTCTGCAACATGTTGCAGTGGCGTGCAGGACCTGAATAAATTGGCAAGCACAGCGGCTGACCGACAGGCCGTGTGTGGATGCTTGGAATCGCTTGTCAAGGGGGTTTCTTATAATGCTCAAACGCTTGCTAATGCTGCTGCTCTTCCGGCTAAGTGTGGCGTCAAGCTTCCCTATAAGATCGACCCACGTACCGACTGTAGCACCATTCGTTAG

Protein sequence

MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR

Homology

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BLAST of Carg12652 vs. NCBI nr
Match: KAG7027534.1 (hypothetical protein SDJN02_11548, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120

Query: 121 STIR 125
           STIR
Sbjct: 121 STIR 124

[Close]

BLAST of Carg12652 vs. NCBI nr
Match: XP_022925226.1 (non-specific lipid-transfer protein 1-like [Cucurbita moschata])

HSP 1 Score: 239.2 bits (609), Expect = 1.9e-59
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVS LGACVSYVTGGGTPSATCCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120

Query: 121 STIR 125
           STIR
Sbjct: 121 STIR 124

[Close]

BLAST of Carg12652 vs. NCBI nr
Match: KAG6595555.1 (hypothetical protein SDJN03_12108, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.9 bits (603), Expect = 9.5e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVS LGACVSYVTGGGTPSATCCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCG+KLPYKIDPRTDC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGIKLPYKIDPRTDC 120

Query: 121 STI 124
           STI
Sbjct: 121 STI 123

[Close]

BLAST of Carg12652 vs. NCBI nr
Match: XP_023521379.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 4.7e-58
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MAS+GMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVS LGACVSYVTGGGTPSATCCS
Sbjct: 1   MASNGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPA+CGVKLPYKIDPR DC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRIDC 120

Query: 121 STIR 125
           STIR
Sbjct: 121 STIR 124

[Close]

BLAST of Carg12652 vs. NCBI nr
Match: XP_023518220.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 4.7e-58
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MAS+GMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVS LGACVSYVTGGGTPSATCCS
Sbjct: 1   MASNGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALP+KCGVKLPYKIDPR DC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPSKCGVKLPYKIDPRIDC 120

Query: 121 STIR 125
           STIR
Sbjct: 121 STIR 124

[Close]

BLAST of Carg12652 vs. ExPASy Swiss-Prot
Match: Q43019 (Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-26
Identity = 59/124 (47.58%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MASSG + +K+  +VA++C + +GG  + AAV+C QVV+ L  C++YV  GG  + +CC+
Sbjct: 1   MASSGQL-LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCT 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GV+ L  LA T ADRQ++C CL+  V G+ Y       AA LP KCGV +PYKI P TDC
Sbjct: 61  GVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDC 120

Query: 121 STIR 125
            +I+
Sbjct: 121 KSIK 123

[Close]

BLAST of Carg12652 vs. ExPASy Swiss-Prot
Match: Q9LZV9 (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana OX=3702 GN=LTP10 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-23
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 28  SEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTAADRQAVCGCLESLVK 87
           SEAA++CN V + L  CV YV  GG    +CC+G++ L+K A++A+D+Q VC C++S+V 
Sbjct: 20  SEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVG 79

Query: 88  GVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR 125
            VSY++  L  AAALP KCGVKLPYKIDP T+C++I+
Sbjct: 80  RVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116

[Close]

BLAST of Carg12652 vs. ExPASy Swiss-Prot
Match: Q43194 (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-22
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 14  VVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGT-PSATCCSGVQDLNKLASTA 73
           VVA    +++    SEAAVTC QV S +G C+SY  G G+ PSA CCSGV+ LN  A T 
Sbjct: 13  VVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTT 72

Query: 74  ADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTI 124
           ADR+A C CL++  +G+      +  AA++P+KCGV +PY I   TDCS +
Sbjct: 73  ADRRAACNCLKNAARGI--RGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121

[Close]

BLAST of Carg12652 vs. ExPASy Swiss-Prot
Match: Q9LDB4 (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana OX=3702 GN=LTP6 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-22
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 13  LVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTA 72
           LV+AL CG        EAAV+CN V++ L  C+SYVT GG     CC+G+  L   A T+
Sbjct: 10  LVLALHCG--------EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTS 69

Query: 73  ADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR 125
            DRQ VC C++S + G++ + +T+ NA  LP+KCGV LPYK  P TDC +I+
Sbjct: 70  VDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113

[Close]

BLAST of Carg12652 vs. ExPASy Swiss-Prot
Match: Q9M5X8 (Non-specific lipid-transfer protein OS=Prunus avium OX=42229 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 60/127 (47.24%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MA S M   K+ LVVAL   +++   +++ A+TC QV S L  C++YV GGG     CC+
Sbjct: 1   MACSAM--TKLALVVALC--MVVSVPIAQ-ALTCGQVSSNLAPCIAYVRGGGAVPPACCN 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESL---VKGVSYNAQTLANAAALPAKCGVKLPYKIDPR 120
           G++++N LA T ADRQ  C CL+ L   V GV+ N     NAAALP KCGV +PYKI P 
Sbjct: 61  GIRNINNLAKTTADRQTACNCLKQLSASVPGVNAN-----NAAALPGKCGVNVPYKISPS 117

Query: 121 TDCSTIR 125
           T+C+T++
Sbjct: 121 TNCATVK 117

[Close]

BLAST of Carg12652 vs. ExPASy TrEMBL
Match: A0A6J1EBM4 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111432531 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.2e-60
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVS LGACVSYVTGGGTPSATCCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120

Query: 121 STIR 125
           STIR
Sbjct: 121 STIR 124

[Close]

BLAST of Carg12652 vs. ExPASy TrEMBL
Match: A0A6J1HTX7 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.9e-58
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVS LGACVSYVTGGG PSATCCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGAPSATCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPA+CGVKLPYKIDPR DC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRIDC 120

Query: 121 STIR 125
           STIR
Sbjct: 121 STIR 124

[Close]

BLAST of Carg12652 vs. ExPASy TrEMBL
Match: A0A1S3CIS8 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MAS+ +  +K+GL V L+  +I GG  +EA VTCNQVVS L  C+SYVTGGG+PS  CCS
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GV+ LNK A T  DRQ VC CL+SL+ GV+YN Q +ANAAALP KCGV LPY I+P  DC
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 STIR 125
           STI+
Sbjct: 121 STIK 124

[Close]

BLAST of Carg12652 vs. ExPASy TrEMBL
Match: A0A5D3CEZ6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00580 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 76/122 (62.30%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MAS+ +  +K+GL V L+  +I GG  +EA VTCNQVVS L  C+SYVTGGG+PS  CCS
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GV+ LNK A T  DRQ VC CL+SL+ GV+YN Q +ANAAALP KCGV LPY I+P  DC
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 ST 123
           ST
Sbjct: 121 ST 122

[Close]

BLAST of Carg12652 vs. ExPASy TrEMBL
Match: A0A0A0KY77 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCS 60
           MAS+ +  +K+GL V  +  +I GG  +EA V+CNQV++ L  CVSYVTGGG PS+ CCS
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120
           GV+ L+  A T  DRQAVC CL+SLV GV YN Q +ANAAALP KCGV LPY I+P  DC
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 121 STIR 125
           +TI+
Sbjct: 121 NTIK 124

[Close]

BLAST of Carg12652 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-24
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 28  SEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTAADRQAVCGCLESLVK 87
           SEAA++CN V + L  CV YV  GG    +CC+G++ L+K A++A+D+Q VC C++S+V 
Sbjct: 20  SEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVG 79

Query: 88  GVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR 125
            VSY++  L  AAALP KCGVKLPYKIDP T+C++I+
Sbjct: 80  RVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116

[Close]

BLAST of Carg12652 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-23
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 13  LVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTA 72
           LV+AL CG        EAAV+CN V++ L  C+SYVT GG     CC+G+  L   A T+
Sbjct: 10  LVLALHCG--------EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTS 69

Query: 73  ADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR 125
            DRQ VC C++S + G++ + +T+ NA  LP+KCGV LPYK  P TDC +I+
Sbjct: 70  VDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113

[Close]

BLAST of Carg12652 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 13  LVVALVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTA 72
           LV+AL CG        EAAV+CN V++ L  C+SYVT GG     CC+G+  L   A T+
Sbjct: 10  LVLALHCG--------EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTS 69

Query: 73  ADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCST 123
            DRQ VC C++S + G++ + +T+ NA  LP+KCGV LPYK  P TDC +
Sbjct: 70  VDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111

[Close]

BLAST of Carg12652 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-19
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 17  LVCGIIMGGRVSEAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTAADRQ 76
           L C I+ G   S AA++C  V S L AC+ YV  GG     CCSGV++LN +A T  DRQ
Sbjct: 12  LACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQ 71

Query: 77  AVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR 125
             C C++   + +  +      AA +P  CGV +PYKI   T+C T+R
Sbjct: 72  QACNCIQGAARALG-SGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118

[Close]

BLAST of Carg12652 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 29  EAAVTCNQVVSYLGACVSYVTGGGTPSATCCSGVQDLNKLASTAADRQAVCGCLESLVKG 88
           +AA+TC  V S L  C+ Y++ GG     CC+GV+ LN +A T  DRQ  C CL+S  KG
Sbjct: 22  DAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKG 81

Query: 89  VSYNAQTLANAAALPAKCGVKLPYKIDPRTDCSTIR 125
           V+ +      A+ LP KCGV +PY I   T+C+TI+
Sbjct: 82  VNPSL-----ASGLPGKCGVSIPYPISTSTNCATIK 112

The following BLAST results are available for this feature:

BLAST of Carg12652 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027534.1	1.3e-60	100.00	hypothetical protein SDJN02_11548, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022925226.1	1.9e-59	99.19	non-specific lipid-transfer protein 1-like [Cucurbita moschata]	[more]
KAG6595555.1	9.5e-59	98.37	hypothetical protein SDJN03_12108, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023521379.1	4.7e-58	96.77	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023518220.1	4.7e-58	96.77	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43019	3.8e-26	47.58	Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1	[more]
Q9LZV9	3.9e-23	53.61	Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana OX=3702 GN=LTP10 ...	[more]
Q43194	4.3e-22	47.75	Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV...	[more]
Q9LDB4	7.4e-22	47.32	Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana OX=3702 GN=LTP6 PE...	[more]
Q9M5X8	1.3e-21	47.24	Non-specific lipid-transfer protein OS=Prunus avium OX=42229 PE=1 SV=1	[more]

BLAST of Carg12652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBM4	9.2e-60	99.19	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11143253...	[more]
A0A6J1HTX7	3.9e-58	96.77	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 ...	[more]
A0A1S3CIS8	2.3e-34	62.10	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3...	[more]
A0A5D3CEZ6	1.1e-33	62.30	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0KY77	8.1e-32	58.87	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 P...	[more]

BLAST of Carg12652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01870.1	2.8e-24	53.61	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G08770.1	5.2e-23	47.32	lipid transfer protein 6	[more]
AT3G08770.2	2.0e-22	47.27	lipid transfer protein 6	[more]
AT2G38540.1	2.1e-19	41.67	lipid transfer protein 1	[more]
AT5G59310.1	3.0e-18	44.79	lipid transfer protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 53..67 score: 46.56 coord: 111..122 score: 51.15 coord: 74..89 score: 40.19 coord: 33..49 score: 42.53 coord: 93..110 score: 38.38
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 8..122
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 102..123
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 34..120 e-value: 7.5E-10 score: 48.7
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 34..120 e-value: 1.1E-8 score: 35.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 32..124 e-value: 1.2E-28 score: 101.3
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..123
None	No IPR available	PANTHER	PTHR33076:SF50	NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED	coord: 8..122
None	No IPR available	CDD	cd01960	nsLTP1	coord: 32..121 e-value: 3.73739E-34 score: 112.058

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12652-RA	Carg12652-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding