Carg12523 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12523
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 500610 .. 501267 (+)
RNA-Seq ExpressionCarg12523
SyntenyCarg12523
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGCCAATATAGCACTCAGCCGCTCCATTTTCTCATACGAACTGTTTGCTATTTTTCTCTGCACAAAGAAAAAGAAAGAGACAGGCCATGGAATCTACCGAGTTTGAACACACTCGAATTGTCTGGTTCTGAAGCTAAACTTTCATCAAACCGGTAACTCTCTCTCTCTCTCTCTCTGAACTGTTGATTGGTTTCCCAGAAAACGGGAGGCTAATAAAAAGTAGAGAATTCTTCTGTATTTCAAGCGTATGTGTTGAACTCGGTCATAATGACGAACTCTGCGGGCCATTGTTGTGTTCTACTGAAAACTACGCAATTCTTTTGGCGAATAATCTGATCATCTGTTTTTTCATCCTCCCAGATCGCCACAAGTTGAGAATTCTTCTGTCCGTTGGATCTGCTTCATTTTCCTTCTCATTGCTGATGAAGAGTGAATTCCAAATTGTGAATGAAACTGAGCCTTTGTCTGCTTCCTGTAGCTTTTAACTGTATTAGAGTCGGTAATATTTGATAGTGCCAAGAATAGAGGGGAGCGGGGGGTTTTCTTCAGCGATGGGATTATGGCTATTAGCTTCAACTGGGCCACCAATTAAACGAAGAGCGGGTTTAAGAATAAAACAGGCGGGTCGAAGTTCATATAGCGGCAGCTAG

mRNA sequence

ATGGAAAAGGCCAATATAGCACTCAGCCGCTCCATTTTCTCATACGAACTGTTTGCTATTTTTCTCTGCACAAAGAAAAAGAAAGAGACAGGCCATGGAATCTACCGAGGGAGCGGGGGGTTTTCTTCAGCGATGGGATTATGGCTATTAGCTTCAACTGGGCCACCAATTAAACGAAGAGCGGGTTTAAGAATAAAACAGGCGGGTCGAAGTTCATATAGCGGCAGCTAG

Coding sequence (CDS)

ATGGAAAAGGCCAATATAGCACTCAGCCGCTCCATTTTCTCATACGAACTGTTTGCTATTTTTCTCTGCACAAAGAAAAAGAAAGAGACAGGCCATGGAATCTACCGAGGGAGCGGGGGGTTTTCTTCAGCGATGGGATTATGGCTATTAGCTTCAACTGGGCCACCAATTAAACGAAGAGCGGGTTTAAGAATAAAACAGGCGGGTCGAAGTTCATATAGCGGCAGCTAG

Protein sequence

MEKANIALSRSIFSYELFAIFLCTKKKKETGHGIYRGSGGFSSAMGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS
Homology
[Close]
BLAST of Carg12523 vs. NCBI nr
Match: KAG7017270.1 (hypothetical protein SDJN02_19133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MEKANIALSRSIFSYELFAIFLCTKKKKETGHGIYRGSGGFSSAMGLWLLASTGPPIKRR 60
          MEKANIALSRSIFSYELFAIFLCTKKKKETGHGIYRGSGGFSSAMGLWLLASTGPPIKRR
Sbjct: 1  MEKANIALSRSIFSYELFAIFLCTKKKKETGHGIYRGSGGFSSAMGLWLLASTGPPIKRR 60

Query: 61 AGLRIKQAGRSSYSGS 77
          AGLRIKQAGRSSYSGS
Sbjct: 61 AGLRIKQAGRSSYSGS 76

[Close]
BLAST of Carg12523 vs. NCBI nr
Match: KAG7027939.1 (hypothetical protein SDJN02_09118, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-11
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 1   MEKANIALSRSIFSYE----------------------LFAIFLCTKKKKETGHGIYRGS 60
           +EKA++A+ RS+F ++                      +  + L      ++   +  G 
Sbjct: 45  LEKASLAIGRSMFPFKERKRQAMESTESPRVENSVNCSIRVLALLELLIFDSARVVEEGG 104

Query: 61  GGFSSAMGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 77
           GG  SAMGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS
Sbjct: 105 GGVCSAMGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 142

[Close]
BLAST of Carg12523 vs. NCBI nr
Match: KAG2690634.1 (hypothetical protein I3760_09G197200 [Carya illinoinensis] >KAG6697443.1 hypothetical protein I3842_09G199700 [Carya illinoinensis] >KAG7964878.1 hypothetical protein I3843_09G193900 [Carya illinoinensis])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 45 MGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 77
          MGL L+ STGPPIKRRAGL+IKQAGR SYSGS
Sbjct: 1  MGLLLIGSTGPPIKRRAGLKIKQAGRGSYSGS 32

[Close]
BLAST of Carg12523 vs. NCBI nr
Match: KAG8647666.1 (hypothetical protein MANES_09G095750v8 [Manihot esculenta])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 44 AMGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 77
          AMGL +L STGPPIKRRAGLRIKQAGR SY GS
Sbjct: 3  AMGLLMLNSTGPPIKRRAGLRIKQAGRGSYRGS 35

[Close]
BLAST of Carg12523 vs. ExPASy TrEMBL
Match: A0A5J5Q3W3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G163600v1 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-04
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 45 MGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 77
          M   LL STGPPIKRRAGLRIKQAGR SY GS
Sbjct: 1  MRFLLLCSTGPPIKRRAGLRIKQAGRGSYRGS 32

[Close]
BLAST of Carg12523 vs. ExPASy TrEMBL
Match: A0A5D2XZ33 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G165200v1 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-04
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 45 MGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 77
          M   LL STGPPIKRRAGLRIKQAGR SY GS
Sbjct: 1  MRFLLLCSTGPPIKRRAGLRIKQAGRGSYRGS 32

[Close]
BLAST of Carg12523 vs. ExPASy TrEMBL
Match: A0A5D2P4H2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G181400v1 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-04
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 45 MGLWLLASTGPPIKRRAGLRIKQAGRSSYSGS 77
          M   LL STGPPIKRRAGLRIKQAGR SY GS
Sbjct: 1  MRFLLLCSTGPPIKRRAGLRIKQAGRGSYRGS 32

The following BLAST results are available for this feature:
BLAST of Carg12523 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017270.16.5e-34100.00hypothetical protein SDJN02_19133, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7027939.14.5e-1145.92hypothetical protein SDJN02_09118, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG2690634.18.2e-0584.38hypothetical protein I3760_09G197200 [Carya illinoinensis] >KAG6697443.1 hypothe... [more]
KAG8647666.18.2e-0584.85hypothetical protein MANES_09G095750v8 [Manihot esculenta][more]
BLAST of Carg12523 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12523 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5J5Q3W39.8e-0481.25Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G163600v1 PE... [more]
A0A5D2XZ339.8e-0481.25Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G165200v1 P... [more]
A0A5D2P4H29.8e-0481.25Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G181400v1 P... [more]
BLAST of Carg12523 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12523-RACarg12523-RAmRNA