Carg12439 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAATAAGCCAAAGCATAAGTGAGTTTCATCGAGAAGAGAAGAGGAGAAGAGAAGAGGAGAGGAGAAAATGGAGCGAAGCATGAAGATGGCGATTATTGTGGGTGTTGTTTTGATGTGCATGGTAGTGGGTGAAGCGGCTATTACATGCGGGGCAGTGGTTAACTCATTGGCTCCGTGCATCCCATATTTGAAAAATCCATCCTCTGGTGTTCCAGCAGCATGTTGCAATGGCATAAGGTCCTTGAACAGCCAAGCCTCCACCTCTGTTGATCGACGCGCCGCTTGCACCTGCTTGAAGTCTGCTGCGAATAGCATCTCTGGGATCAACTTTAACGCCGCGTCTAACCTTCCAAGCCAGTGTGGCGTCCGCATTCCTTATAAGATCAGCCCCAGCACCGACTGCAACAAGTAAGTACATCCTATGCTTCTACGTTTGTCCTGGTTTTTATGTAAGGAATTAATGTCTCATATTGGTTTCATTTGACATTGGTTGCAGGGTGAACTGAGGGCGGAGGTGATGTTAGCGTAGCCGAAGTTTAATTCCCATAGCAGTACCAGAATGAATAAGAGCATGGGTGGTTTCCTGCTTTTACTATCTCTTTTTCTTGTTTCCATTAGTGAGCGTGTTGTATGGGATTCCAATGGCACACGTGTCATTGCGAGTTCTAATATATTATTAAGAATATTAATCTATTTCCTCTTTTTCT AAAATAAGCCAAAGCATAAGTGAGTTTCATCGAGAAGAGAAGAGGAGAAGAGAAGAGGAGAGGAGAAAATGGAGCGAAGCATGAAGATGGCGATTATTGTGGGTGTTGTTTTGATGTGCATGGTAGTGGGTGAAGCGGCTATTACATGCGGGGCAGTGGTTAACTCATTGGCTCCGTGCATCCCATATTTGAAAAATCCATCCTCTGGTGTTCCAGCAGCATGTTGCAATGGCATAAGGTCCTTGAACAGCCAAGCCTCCACCTCTGTTGATCGACGCGCCGCTTGCACCTGCTTGAAGTCTGCTGCGAATAGCATCTCTGGGATCAACTTTAACGCCGCGTCTAACCTTCCAAGCCAGTGTGGCGTCCGCATTCCTTATAAGATCAGCCCCAGCACCGACTGCAACAAGGTGAACTGAGGGCGGAGGTGATGTTAGCGTAGCCGAAGTTTAATTCCCATAGCAGTACCAGAATGAATAAGAGCATGGGTGGTTTCCTGCTTTTACTATCTCTTTTTCTTGTTTCCATTAGTGAGCGTGTTGTATGGGATTCCAATGGCACACGTGTCATTGCGAGTTCTAATATATTATTAAGAATATTAATCTATTTCCTCTTTTTCT ATGGAGCGAAGCATGAAGATGGCGATTATTGTGGGTGTTGTTTTGATGTGCATGGTAGTGGGTGAAGCGGCTATTACATGCGGGGCAGTGGTTAACTCATTGGCTCCGTGCATCCCATATTTGAAAAATCCATCCTCTGGTGTTCCAGCAGCATGTTGCAATGGCATAAGGTCCTTGAACAGCCAAGCCTCCACCTCTGTTGATCGACGCGCCGCTTGCACCTGCTTGAAGTCTGCTGCGAATAGCATCTCTGGGATCAACTTTAACGCCGCGTCTAACCTTCCAAGCCAGTGTGGCGTCCGCATTCCTTATAAGATCAGCCCCAGCACCGACTGCAACAAGGTGAACTGA MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN Homology
BLAST of Carg12439 vs. NCBI nr
Match: KAG7017187.1 (hypothetical protein SDJN02_19049 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Carg12439 vs. NCBI nr
Match: KAG6580430.1 (hypothetical protein SDJN03_20432, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54 Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0
BLAST of Carg12439 vs. NCBI nr
Match: XP_023528122.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51 Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0
BLAST of Carg12439 vs. NCBI nr
Match: XP_022935125.1 (non-specific lipid-transfer protein 1-like [Cucurbita moschata]) HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48 Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 0
BLAST of Carg12439 vs. NCBI nr
Match: XP_022982607.1 (non-specific lipid-transfer protein 1-like [Cucurbita maxima]) HSP 1 Score: 198.7 bits (504), Expect = 2.7e-47 Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: Q42762 (Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 4.9e-28 Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: Q43129 (Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 4.9e-28 Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: P19656 (Non-specific lipid-transfer protein OS=Zea mays OX=4577 PE=1 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 4.2e-27 Identity = 61/120 (50.83%), Postives = 86/120 (71.67%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: Q43194 (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 7.1e-27 Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: P85894 (Non-specific lipid-transfer protein 1 OS=Morus nigra OX=85232 PE=1 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26 Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A6J1F9Q5 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111442087 PE=3 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49 Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A6J1IX25 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 PE=3 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A5D3DMS3 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00250 PE=3 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34 Identity = 76/117 (64.96%), Postives = 96/117 (82.05%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A1S3B5F4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34 Identity = 76/117 (64.96%), Postives = 96/117 (82.05%), Query Frame = 0
BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A0A0LF44 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 PE=3 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 4.9e-31 Identity = 75/109 (68.81%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Carg12439 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 ) HSP 1 Score: 102.1 bits (253), Expect = 3.2e-22 Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 0
BLAST of Carg12439 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 ) HSP 1 Score: 95.1 bits (235), Expect = 3.9e-20 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0
BLAST of Carg12439 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 ) HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19 Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 0
BLAST of Carg12439 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 ) HSP 1 Score: 91.7 bits (226), Expect = 4.3e-19 Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0
BLAST of Carg12439 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 ) HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18 Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|