Carg12439 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12439
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Non-specific lipid-transfer protein
Location	Carg_Chr14: 71310 .. 72017 (-)
RNA-Seq Expression	Carg12439
Synteny	Carg12439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAAGCCAAAGCATAAGTGAGTTTCATCGAGAAGAGAAGAGGAGAAGAGAAGAGGAGAGGAGAAAATGGAGCGAAGCATGAAGATGGCGATTATTGTGGGTGTTGTTTTGATGTGCATGGTAGTGGGTGAAGCGGCTATTACATGCGGGGCAGTGGTTAACTCATTGGCTCCGTGCATCCCATATTTGAAAAATCCATCCTCTGGTGTTCCAGCAGCATGTTGCAATGGCATAAGGTCCTTGAACAGCCAAGCCTCCACCTCTGTTGATCGACGCGCCGCTTGCACCTGCTTGAAGTCTGCTGCGAATAGCATCTCTGGGATCAACTTTAACGCCGCGTCTAACCTTCCAAGCCAGTGTGGCGTCCGCATTCCTTATAAGATCAGCCCCAGCACCGACTGCAACAAGTAAGTACATCCTATGCTTCTACGTTTGTCCTGGTTTTTATGTAAGGAATTAATGTCTCATATTGGTTTCATTTGACATTGGTTGCAGGGTGAACTGAGGGCGGAGGTGATGTTAGCGTAGCCGAAGTTTAATTCCCATAGCAGTACCAGAATGAATAAGAGCATGGGTGGTTTCCTGCTTTTACTATCTCTTTTTCTTGTTTCCATTAGTGAGCGTGTTGTATGGGATTCCAATGGCACACGTGTCATTGCGAGTTCTAATATATTATTAAGAATATTAATCTATTTCCTCTTTTTCT

mRNA sequence

AAAATAAGCCAAAGCATAAGTGAGTTTCATCGAGAAGAGAAGAGGAGAAGAGAAGAGGAGAGGAGAAAATGGAGCGAAGCATGAAGATGGCGATTATTGTGGGTGTTGTTTTGATGTGCATGGTAGTGGGTGAAGCGGCTATTACATGCGGGGCAGTGGTTAACTCATTGGCTCCGTGCATCCCATATTTGAAAAATCCATCCTCTGGTGTTCCAGCAGCATGTTGCAATGGCATAAGGTCCTTGAACAGCCAAGCCTCCACCTCTGTTGATCGACGCGCCGCTTGCACCTGCTTGAAGTCTGCTGCGAATAGCATCTCTGGGATCAACTTTAACGCCGCGTCTAACCTTCCAAGCCAGTGTGGCGTCCGCATTCCTTATAAGATCAGCCCCAGCACCGACTGCAACAAGGTGAACTGAGGGCGGAGGTGATGTTAGCGTAGCCGAAGTTTAATTCCCATAGCAGTACCAGAATGAATAAGAGCATGGGTGGTTTCCTGCTTTTACTATCTCTTTTTCTTGTTTCCATTAGTGAGCGTGTTGTATGGGATTCCAATGGCACACGTGTCATTGCGAGTTCTAATATATTATTAAGAATATTAATCTATTTCCTCTTTTTCT

Coding sequence (CDS)

ATGGAGCGAAGCATGAAGATGGCGATTATTGTGGGTGTTGTTTTGATGTGCATGGTAGTGGGTGAAGCGGCTATTACATGCGGGGCAGTGGTTAACTCATTGGCTCCGTGCATCCCATATTTGAAAAATCCATCCTCTGGTGTTCCAGCAGCATGTTGCAATGGCATAAGGTCCTTGAACAGCCAAGCCTCCACCTCTGTTGATCGACGCGCCGCTTGCACCTGCTTGAAGTCTGCTGCGAATAGCATCTCTGGGATCAACTTTAACGCCGCGTCTAACCTTCCAAGCCAGTGTGGCGTCCGCATTCCTTATAAGATCAGCCCCAGCACCGACTGCAACAAGGTGAACTGA

Protein sequence

MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN

Homology

[Close]

BLAST of Carg12439 vs. NCBI nr
Match: KAG7017187.1 (hypothetical protein SDJN02_19049 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN
Sbjct: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of Carg12439 vs. NCBI nr
Match: KAG6580430.1 (hypothetical protein SDJN03_20432, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAIIVGVVLMCMVV EAAITCGAVV+SLAPCIPYLKNPSSGVPAACCNGIRSLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVSEAAITCGAVVSSLAPCIPYLKNPSSGVPAACCNGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN
Sbjct: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of Carg12439 vs. NCBI nr
Match: XP_023528122.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAIIVGVVLMCMVVGEAAITCGAV +S+APCIPYLKNPSSGVPAACCNGIRSLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVASSVAPCIPYLKNPSSGVPAACCNGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTSVDRR ACTCLKSAA+SI GINFNAAS+LPSQCGVRIPYKISPSTDCNKVN
Sbjct: 61  SQASTSVDRRTACTCLKSAASSIPGINFNAASSLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of Carg12439 vs. NCBI nr
Match: XP_022935125.1 (non-specific lipid-transfer protein 1-like [Cucurbita moschata])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAIIVGVVLMCMVVGEAAI+CG V  S++PCI YLKNPSSGVPAACCNGIRSLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAISCGTVARSVSPCISYLKNPSSGVPAACCNGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTSVDRR ACTCLKSAANSISGINFNAAS+LPS+CGV IPYKISPSTDC+KVN
Sbjct: 61  SQASTSVDRRTACTCLKSAANSISGINFNAASSLPSKCGVSIPYKISPSTDCSKVN 116

[Close]

BLAST of Carg12439 vs. NCBI nr
Match: XP_022982607.1 (non-specific lipid-transfer protein 1-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 2.7e-47
Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAI+VGVVLMCMVVGEAAI+CG V +S+APCIPYL+NPS+G+PAACC+GIRSLN
Sbjct: 1   MERSMKMAIVVGVVLMCMVVGEAAISCGTVASSVAPCIPYLRNPSTGLPAACCSGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTS DRR AC CLKSAANS+SGIN+NAAS+LPS+CGV IPYKISPSTDCNKVN
Sbjct: 61  SQASTSADRRTACNCLKSAANSVSGINYNAASSLPSKCGVSIPYKISPSTDCNKVN 116

[Close]

BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: Q42762 (Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-28
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 4   SMKMAIIVGVVLMCMVVG----EAAITCGAVVNSLAPCIPYLKNPSSG-VPAACCNGIRS 63
           S+K+A    VV++CMVVG    + A+T G V NSLAPCI YL+   +G VP  CC GI+S
Sbjct: 2   SLKLAC---VVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKS 61

Query: 64  LNSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKV 116
           LNS A T+  R+AAC C+KSAA  I+GINF  AS LP +CGV IPYKISPSTDCN V
Sbjct: 62  LNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 115

[Close]

BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: Q43129 (Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-28
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 4   SMKMAIIVGVVLMCMVVG----EAAITCGAVVNSLAPCIPYLKNPSSG-VPAACCNGIRS 63
           S+K+A    VV++CMVVG    + A+T G V NSLAPCI YL+   +G VP  CC GI+S
Sbjct: 6   SLKLAC---VVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKS 65

Query: 64  LNSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKV 116
           LNS A T+  R+AAC C+KSAA  I+GINF  AS LP +CGV IPYKISPSTDCN V
Sbjct: 66  LNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 119

[Close]

BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: P19656 (Non-specific lipid-transfer protein OS=Zea mays OX=4577 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-27
Identity = 61/120 (50.83%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 1   MERSMKMAI----IVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGI 60
           M R+ ++A+    +V +VL+     EAAI+CG V +++APCI Y +   SG  A CC+G+
Sbjct: 1   MARTQQLAVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGV 60

Query: 61  RSLNSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           RSLN+ A T+ DRRAAC CLK+AA  +SG+N   A+++PS+CGV IPY IS STDC++VN
Sbjct: 61  RSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 120

[Close]

BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: Q43194 (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-27
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 1   MERSMKMAIIVGV------VLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCN 60
           M RSMK+A+ + V      V++     EAA+TCG V +++ PC+ Y +   SG  A CC+
Sbjct: 1   MARSMKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCS 60

Query: 61  GIRSLNSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNK 117
           G+RSLNS A T+ DRRAAC CLK+AA  I G+N   A+++PS+CGV IPY IS STDC++
Sbjct: 61  GVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSR 120

[Close]

BLAST of Carg12439 vs. ExPASy Swiss-Prot
Match: P85894 (Non-specific lipid-transfer protein 1 OS=Morus nigra OX=85232 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 25  ITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQASTSVDRRAACTCLKSAANSIS 84
           ITCG V +SLAPCI YL+     VPA CCNG+RSLN+ A T+ DR+AAC CLKSA NSI 
Sbjct: 1   ITCGQVSSSLAPCINYLR-AGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIK 60

Query: 85  GINFNAASNLPSQCGVRIPYKISPSTDCNKV 116
           G+N N A+ LP +CGV +PYKISPSTDC  V
Sbjct: 61  GLNLNLAAGLPGKCGVSVPYKISPSTDCKSV 90

[Close]

BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A6J1F9Q5 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111442087 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAIIVGVVLMCMVVGEAAI+CG V  S++PCI YLKNPSSGVPAACCNGIRSLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAISCGTVARSVSPCISYLKNPSSGVPAACCNGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTSVDRR ACTCLKSAANSISGINFNAAS+LPS+CGV IPYKISPSTDC+KVN
Sbjct: 61  SQASTSVDRRTACTCLKSAANSISGINFNAASSLPSKCGVSIPYKISPSTDCSKVN 116

[Close]

BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A6J1IX25 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60
           MERSMKMAI+VGVVLMCMVVGEAAI+CG V +S+APCIPYL+NPS+G+PAACC+GIRSLN
Sbjct: 1   MERSMKMAIVVGVVLMCMVVGEAAISCGTVASSVAPCIPYLRNPSTGLPAACCSGIRSLN 60

Query: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           SQASTS DRR AC CLKSAANS+SGIN+NAAS+LPS+CGV IPYKISPSTDCNKVN
Sbjct: 61  SQASTSADRRTACNCLKSAANSVSGINYNAASSLPSKCGVSIPYKISPSTDCNKVN 116

[Close]

BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A5D3DMS3 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00250 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 76/117 (64.96%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVV-GEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSL 60
           ME  +K  +IVG+V+MCMVV GEAA+TCG+V  ++ PCIPYL++PS+ VPA CC+GIRSL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 61  NSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           N QA+T+ DRR AC CLKSAA SISGIN+ AA+ LP +CGV I Y ISP+TDC++VN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A1S3B5F4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 76/117 (64.96%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MERSMKMAIIVGVVLMCMVV-GEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSL 60
           ME  +K  +IVG+V+MCMVV GEAA+TCG+V  ++ PCIPYL++PS+ VPA CC+GIRSL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 61  NSQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           N QA+T+ DRR AC CLKSAA SISGIN+ AA+ LP +CGV I Y ISP+TDC++VN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of Carg12439 vs. ExPASy TrEMBL
Match: A0A0A0LF44 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.9e-31
Identity = 75/109 (68.81%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 10  IVGVVLMCMVV-GEAA-ITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQASTSV 69
           IVG+V+MCMVV GEAA +TCG V +S++ CI YL++    VP  CCNGIRSLNSQAST+V
Sbjct: 13  IVGIVMMCMVVQGEAAGMTCGKVASSVSGCIGYLRSAQGQVPQVCCNGIRSLNSQASTTV 72

Query: 70  DRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 117
           DRR AC CLK+AA SI GIN+ AA++LPS+CGV +PYKISPSTDC KVN
Sbjct: 73  DRRIACNCLKAAAGSIEGINYGAAASLPSKCGVSVPYKISPSTDCAKVN 121

[Close]

BLAST of Carg12439 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-22
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 13  VVLMCMVVG-EAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQASTSVDRRA 72
           V+ +C+V   +AAI+CG V  SLAPC  YL +    VP +CC G+++LNS A T+ DR+ 
Sbjct: 12  VLTVCIVASVDAAISCGTVAGSLAPCATYL-SKGGLVPPSCCAGVKTLNSMAKTTPDRQQ 71

Query: 73  ACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKV 116
           AC C++S A SISG+N + AS LP +CGV IPY IS ST+CN +
Sbjct: 72  ACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Carg12439 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-20
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 3   RSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQ 62
           RS+ +A+ + + L C   GEAA++C  V+  L PC+ Y+      VP  CCNG+ +L SQ
Sbjct: 2   RSLLLAVCLVLALHC---GEAAVSCNTVIADLYPCLSYV-TQGGPVPTLCCNGLTTLKSQ 61

Query: 63  ASTSVDRRAACTCLKSAAN--SISGINFNAASNLPSQCGVRIPYKISPSTDCNKV 116
           A TSVDR+  C C+KSA    ++S      A  LPS+CGV +PYK SPSTDC+ +
Sbjct: 62  AQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSI 112

[Close]

BLAST of Carg12439 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 3   RSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQ 62
           RS+ +A+ + + L C   GEAA++C  V+  L PC+ Y+      VP  CCNG+ +L SQ
Sbjct: 2   RSLLLAVCLVLALHC---GEAAVSCNTVIADLYPCLSYV-TQGGPVPTLCCNGLTTLKSQ 61

Query: 63  ASTSVDRRAACTCLKSAAN--SISGINFNAASNLPSQCGVRIPYKISPSTDCN 114
           A TSVDR+  C C+KSA    ++S      A  LPS+CGV +PYK SPSTDC+
Sbjct: 62  AQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCD 110

[Close]

BLAST of Carg12439 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-19
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 22  EAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLNSQASTSVDRRAACTCLKSAAN 81
           +AAITCG V +SL+PC+ YL +    VP  CC G++ LN  A T+ DR+ AC CL+SAA 
Sbjct: 22  DAAITCGTVASSLSPCLGYL-SKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA- 81

Query: 82  SISGINFNAASNLPSQCGVRIPYKISPSTDC 113
              G+N + AS LP +CGV IPY IS ST+C
Sbjct: 82  --KGVNPSLASGLPGKCGVSIPYPISTSTNC 108

[Close]

BLAST of Carg12439 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 5   MKMAIIVGVVLMCMVV-----GEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSL 64
           MK+A +   +L CM+V       AA++CG+V ++LA CI Y+      +P ACC+G+++L
Sbjct: 5   MKLACL---LLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQ-GGVIPPACCSGVKNL 64

Query: 65  NSQASTSVDRRAACTCLKSAANSI-SGINFNAASNLPSQCGVRIPYKISPSTDCNKV 116
           NS A T+ DR+ AC C++ AA ++ SG+N   A+ +P  CGV IPYKIS ST+C  V
Sbjct: 65  NSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117

The following BLAST results are available for this feature:

BLAST of Carg12439 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017187.1	4.5e-55	100.00	hypothetical protein SDJN02_19049 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580430.1	8.6e-54	98.28	hypothetical protein SDJN03_20432, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023528122.1	1.8e-51	93.97	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935125.1	1.4e-48	89.66	non-specific lipid-transfer protein 1-like [Cucurbita moschata]	[more]
XP_022982607.1	2.7e-47	84.48	non-specific lipid-transfer protein 1-like [Cucurbita maxima]	[more]

BLAST of Carg12439 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42762	4.9e-28	59.83	Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=3 SV=1	[more]
Q43129	4.9e-28	59.83	Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]
P19656	4.2e-27	50.83	Non-specific lipid-transfer protein OS=Zea mays OX=4577 PE=1 SV=1	[more]
Q43194	7.1e-27	50.00	Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV...	[more]
P85894	2.7e-26	64.84	Non-specific lipid-transfer protein 1 OS=Morus nigra OX=85232 PE=1 SV=1	[more]

BLAST of Carg12439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9Q5	6.9e-49	89.66	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11144208...	[more]
A0A6J1IX25	1.3e-47	84.48	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 ...	[more]
A0A5D3DMS3	1.3e-34	64.96	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B5F4	1.3e-34	64.96	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3...	[more]
A0A0A0LF44	4.9e-31	68.81	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 P...	[more]

BLAST of Carg12439 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59320.1	3.2e-22	51.92	lipid transfer protein 3	[more]
AT3G08770.1	3.9e-20	45.22	lipid transfer protein 6	[more]
AT3G08770.2	1.1e-19	46.02	lipid transfer protein 6	[more]
AT5G59310.1	4.3e-19	52.75	lipid transfer protein 4	[more]
AT2G38540.1	1.2e-18	44.44	lipid transfer protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 68..83 score: 60.1 coord: 103..114 score: 61.67 coord: 26..42 score: 49.68 coord: 47..61 score: 47.79 coord: 85..102 score: 45.3
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 2..114
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 94..115
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 27..112 e-value: 3.4E-15 score: 66.5
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 27..112 e-value: 5.8E-11 score: 42.7
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 24..116 e-value: 3.5E-31 score: 109.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 24..115
None	No IPR available	PANTHER	PTHR33076:SF103	NON-SPECIFIC LIPID-TRANSFER PROTEIN 6	coord: 2..114
None	No IPR available	CDD	cd01960	nsLTP1	coord: 25..113 e-value: 8.15146E-40 score: 125.925

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12439-RA	Carg12439-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044403	biological process involved in symbiotic interaction
biological_process	GO:0010143	cutin biosynthetic process
biological_process	GO:0006869	lipid transport
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0090379	secondary cell wall biogenesis involved in seed trichome differentiation
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0008134	transcription factor binding