Carg11538 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGGTATAACTCTATCACTCTCTGCATTCCCCTTTCCCCAACCCTAATTCTCATCATCATCACCAAACTCACTCTTCTTCAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGAAAATCGCCCAATACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGGCCAATTTTGTTCTGCGTTGAATCACGATCAATACTGTGTTGATGCTGATGGACGAAGAACTTGTTGGAATCTATGCCTTCTTCTTCAACAAAGCTAAGTCTTCAACTTTCCAACATACCATTTCTTACTCATTCAACTCAATTCTATCCTAAACCATTTCTTCATCCAATTCTATCCTAAACTACAAAGTATATAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATTCTGATTTATTTTATGCTTACTTCATGTTTGAAAATCGGTGTAAAAATGGGACAAATTGGAGAAATATAAGAGTACCCATATGATTCTTTGTTTCAAATTGGATCTTTCTCAATTGAAGGTAATTTCAAAGGAGTTAATAAGAAATTTTGAAAAGTTAAAAGTCGTTTAGACTAGATTTATGTATCCATAAGAAGCATATAGACTAATAAAGCTATAAGACTAAAATAAAAGATGGTAAAGATAGCAATGAGATTCTAACCGTACTATATAGCCGATTACTACCTCATAGCTCGGGAATTTGATGAGGTGATGTGTTAGTTTGGTTCC TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGAAAATCGCCCAATACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGGCCAATTTTGTTCTGCGTTGAATCACGATCAATACTGTGTTGATGCTGATGGACGAAGAACTTGTTGGAATCTATGCCTTCTTCTTCAACAAAGCTAAGTCTTCAACTTTCCAACATACCATTTCTTACTCATTCAACTCAATTCTATCCTAAACCATTTCTTCATCCAATTCTATCCTAAACTACAAAGTATATAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATTCTGATTTATTTTATGCTTACTTCATGTTTGAAAATCGGTGTAAAAATGGGACAAATTGGAGAAATATAAGAGTACCCATATGATTCTTTGTTTCAAATTGGATCTTTCTCAATTGAAGGTAATTTCAAAGGAGTTAATAAGAAATTTTGAAAAGTTAAAAGTCGTTTAGACTAGATTTATGTATCCATAAGAAGCATATAGACTAATAAAGCTATAAGACTAAAATAAAAGATGGTAAAGATAGCAATGAGATTCTAACCGTACTATATAGCCGATTACTACCTCATAGCTCGGGAATTTGATGAGGTGATGTGTTAGTTTGGTTCC ATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGA MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK Homology
BLAST of Carg11538 vs. NCBI nr
Match: KAG7014596.1 (Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 374.0 bits (959), Expect = 7.5e-100 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
BLAST of Carg11538 vs. NCBI nr
Match: XP_023547762.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 370.9 bits (951), Expect = 6.3e-99 Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0
BLAST of Carg11538 vs. NCBI nr
Match: XP_022953298.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 368.6 bits (945), Expect = 3.1e-98 Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0
BLAST of Carg11538 vs. NCBI nr
Match: KAG6576078.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98 Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0
BLAST of Carg11538 vs. NCBI nr
Match: XP_022991617.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 367.1 bits (941), Expect = 9.1e-98 Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2) HSP 1 Score: 213.4 bits (542), Expect = 2.2e-54 Identity = 110/153 (71.90%), Postives = 125/153 (81.70%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 3.3e-50 Identity = 107/188 (56.91%), Postives = 139/188 (73.94%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 3.3e-34 Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 7.4e-34 Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.7e-33 Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1GN09 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 1.5e-98 Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 4.4e-98 Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 6.4e-97 Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96 Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0
BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 5.8e-82 Identity = 162/189 (85.71%), Postives = 169/189 (89.42%), Query Frame = 0
BLAST of Carg11538 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein ) HSP 1 Score: 199.5 bits (506), Expect = 2.4e-51 Identity = 107/188 (56.91%), Postives = 139/188 (73.94%), Query Frame = 0
BLAST of Carg11538 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein ) HSP 1 Score: 197.6 bits (501), Expect = 8.9e-51 Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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