Carg11538 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11538
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II reaction center Psb28 protein
Location	Carg_Chr17: 9616553 .. 9617931 (-)
RNA-Seq Expression	Carg11538
Synteny	Carg11538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGGTATAACTCTATCACTCTCTGCATTCCCCTTTCCCCAACCCTAATTCTCATCATCATCACCAAACTCACTCTTCTTCAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGAAAATCGCCCAATACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGGCCAATTTTGTTCTGCGTTGAATCACGATCAATACTGTGTTGATGCTGATGGACGAAGAACTTGTTGGAATCTATGCCTTCTTCTTCAACAAAGCTAAGTCTTCAACTTTCCAACATACCATTTCTTACTCATTCAACTCAATTCTATCCTAAACCATTTCTTCATCCAATTCTATCCTAAACTACAAAGTATATAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATTCTGATTTATTTTATGCTTACTTCATGTTTGAAAATCGGTGTAAAAATGGGACAAATTGGAGAAATATAAGAGTACCCATATGATTCTTTGTTTCAAATTGGATCTTTCTCAATTGAAGGTAATTTCAAAGGAGTTAATAAGAAATTTTGAAAAGTTAAAAGTCGTTTAGACTAGATTTATGTATCCATAAGAAGCATATAGACTAATAAAGCTATAAGACTAAAATAAAAGATGGTAAAGATAGCAATGAGATTCTAACCGTACTATATAGCCGATTACTACCTCATAGCTCGGGAATTTGATGAGGTGATGTGTTAGTTTGGTTCC

mRNA sequence

TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGAAAATCGCCCAATACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGGCCAATTTTGTTCTGCGTTGAATCACGATCAATACTGTGTTGATGCTGATGGACGAAGAACTTGTTGGAATCTATGCCTTCTTCTTCAACAAAGCTAAGTCTTCAACTTTCCAACATACCATTTCTTACTCATTCAACTCAATTCTATCCTAAACCATTTCTTCATCCAATTCTATCCTAAACTACAAAGTATATAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATTCTGATTTATTTTATGCTTACTTCATGTTTGAAAATCGGTGTAAAAATGGGACAAATTGGAGAAATATAAGAGTACCCATATGATTCTTTGTTTCAAATTGGATCTTTCTCAATTGAAGGTAATTTCAAAGGAGTTAATAAGAAATTTTGAAAAGTTAAAAGTCGTTTAGACTAGATTTATGTATCCATAAGAAGCATATAGACTAATAAAGCTATAAGACTAAAATAAAAGATGGTAAAGATAGCAATGAGATTCTAACCGTACTATATAGCCGATTACTACCTCATAGCTCGGGAATTTGATGAGGTGATGTGTTAGTTTGGTTCC

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGA

Protein sequence

MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: KAG7014596.1 (Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.0 bits (959), Expect = 7.5e-100
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 181 GLQFVKK 187

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: XP_023547762.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.9 bits (951), Expect = 6.3e-99
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHH SSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHSSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 230

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: XP_022953298.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 368.6 bits (945), Expect = 3.1e-98
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAA ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQP+GRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 230

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: KAG6576078.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTK AFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 1   MATLQSLASTSLSSPHLHHPSSTNTK-AFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 181 GLQFVKK 186

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: XP_022991617.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 367.1 bits (941), Expect = 9.1e-98
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSS FSAFHGRSLNVSGGKCQTVTRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RC+PHGR SNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 217 GLQFVKK 223

[Close]

BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-54
Identity = 110/153 (71.90%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 37  SVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVL--PKIQFIQGTDEQTVPDVR 96
           S+ S+F G SL     K  ++ R       RPS  ++M+   P IQFIQGTDEQT+PDVR
Sbjct: 34  SLHSSFGGVSLQCRRTKPASLHR------SRPSMQVVMMAARPAIQFIQGTDEQTIPDVR 93

Query: 97  LTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI 156
           LTKSRDGTNG+AIF F+QPSVFDSS E+GDITGFYMID+EGV+QSVDV+AKF+NGKPA I
Sbjct: 94  LTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALI 153

Query: 157 EAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 188
           EAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 154 EAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-50
Identity = 107/188 (56.91%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MATLQSLAS-TSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 60
           MA ++S+ S TS++    + P S    ++ +   + SS F+        VS  + Q  +R
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFT-----GSPVSLPRAQPSSR 60

Query: 61  RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120
              +P  +P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F+QPSVFDSS
Sbjct: 61  TALRPM-KPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
           GEVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 188
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-34
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 78  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFD-SSGEVGDITGFYMIDEEGV 137
           KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F+ P++ D S+ + G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 138 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 187
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.4e-34
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 78  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFD-SSGEVGDITGFYMIDEEGV 137
           KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F+ P++ D ++ + G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 138 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 187
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of Carg11538 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-33
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 79  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEV-GDITGFYMIDEEGVI 138
           IQFIQG +E  +PDVRLT+SRDG+ G A F+F  P V ++   V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 139 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 187
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1GN09 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.5e-98
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAA ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQP+GRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 230

[Close]

BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.4e-98
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSS FSAFHGRSLNVSGGKCQTVTRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RC+PHGR SNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 217 GLQFVKK 223

[Close]

BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.4e-97
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKA  ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAC-ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQP+GRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 229

[Close]

BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTK AFASARLHSS FSAFHGRSLNVSGGKCQTVTRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTK-AFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RC+PHGR SNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 217 GLQFVKK 222

[Close]

BLAST of Carg11538 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.8e-82
Identity = 162/189 (85.71%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLAST    PHLHHPSST     FASA LH S FSAF+GRSL+VSGGKCQT+ RR
Sbjct: 40  MATLQSLAST----PHLHHPSSTK---VFASATLHRSAFSAFYGRSLSVSGGKCQTLGRR 99

Query: 61  RCQPHGRPSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDS 120
           RC+ HGRP N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDS
Sbjct: 100 RCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDS 159

Query: 121 SGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 180
           S EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN
Sbjct: 160 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 219

Query: 181 ANGLQFVKK 188
           ANGLQFVKK
Sbjct: 220 ANGLQFVKK 221

[Close]

BLAST of Carg11538 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.4e-51
Identity = 107/188 (56.91%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MATLQSLAS-TSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 60
           MA ++S+ S TS++    + P S    ++ +   + SS F+        VS  + Q  +R
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFT-----GSPVSLPRAQPSSR 60

Query: 61  RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120
              +P  +P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F+QPSVFDSS
Sbjct: 61  TALRPM-KPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
           GEVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 188
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of Carg11538 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 197.6 bits (501), Expect = 8.9e-51
Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 0


Query: 1   MATLQSLAS-TSLSSPHLHHP-SSTNTKAAFA-SARLHSSVFSAFHGRSLNVSGGKCQTV 60
           MA ++S+ S TS++    + P S T     FA   R    V S+     +  S      V
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGTRKNPNFALLIRRIGIVLSSCSVLPIKSSSFTGSPV 60

Query: 61  TRRRCQPHGR-------PSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF 120
           +  R QP  R       P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F
Sbjct: 61  SLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSF 120

Query: 121 EQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFM 180
           +QPSVFDSSGEVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFM
Sbjct: 121 DQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFM 180

Query: 181 RFMERYSNANGLQFVKK 188
           RFMERYS+ NGLQFVKK
Sbjct: 181 RFMERYSDQNGLQFVKK 197

The following BLAST results are available for this feature:

BLAST of Carg11538 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014596.1	7.5e-100	100.00	Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrospe...	[more]
XP_023547762.1	6.3e-99	99.47	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
XP_022953298.1	3.1e-98	98.93	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
KAG6576078.1	5.4e-98	99.47	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]
XP_022991617.1	9.1e-98	98.40	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]

BLAST of Carg11538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	2.2e-54	71.90	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	3.3e-50	56.91	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	3.3e-34	59.09	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	7.4e-34	57.27	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	1.7e-33	60.55	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of Carg11538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GN09	1.5e-98	98.93	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JMC2	4.4e-98	98.40	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	6.4e-97	98.40	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JWT9	3.2e-96	97.86	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1KY50	5.8e-82	85.71	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Carg11538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.1	2.4e-51	56.91	photosystem II reaction center PSB28 protein	[more]
AT4G28660.2	8.9e-51	56.35	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 76..187 e-value: 2.0E-45 score: 155.6
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 79..184 e-value: 6.1E-43 score: 145.4
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 79..185 e-value: 4.8E-45 score: 150.3
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..187
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 76..185 score: 30.366323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11538-RA	Carg11538-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II