Carg11435 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11435
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	C2H2-type domain-containing protein
Location	Carg_Chr16: 2959918 .. 2962286 (+)
RNA-Seq Expression	Carg11435
Synteny	Carg11435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGATTTTTGGTGCAGAATTTTCCGATCCTCTGCTTCTCAAAATCTTGAACGAAGAAGATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTTCTTCATCTCTTCAATCTTTGTTTCTATTATATTCTCGATTGGATTTGAGTGTTTGTTCTTTCTTTTTGATCTGGATCATAATCTTATTAATTTTATGATGTCAAAGCAATAGAACATTTCATTTCCAGTTATCATTTTTCCGTATTGTTTTCTAATCTAGGTTATAATGCACTTGATATTGCTGTTGCGATGCTCTCAATTGATAAGAAATTCATTGGAGTTTGATTGATTTTGGTTTTCTCTTTCATTTTAAGTCAATGCTAAAATCCAAAAGTAGATCATTTTGGCGGATCATCTGTTATAGGGTTTGGCAGGACTGGTACCAGAACTATGAGTTTATTGACTGGAAAATGTTCAAGCCTTAATTCTAGATGATAAAGAGATTTTGAGTTCAGGCTACAAAATATAGGAGCCATCTACTTGAAATATTGAATAGAAACTATGATTCAAGATTTTTTATGTGTAGCTCTGATATTGTCTTAAGAAGTTCTCTTGTTGCGAGAAATGCTGCCAGATTAGTTAAATTGTGATTGAGTTCATGATTATTGGGAAAACAAGAATTTGATACTCCATATCCAAATTCACAGCTCTATTTGTAGAACTTCTGAGAATAATTCTCTTTTTGTTTACTCCTTTGGATTCCTAATTTGTATGTTGAGTTTTTTCTTTCTTTTGGGATAGATGATAACAACCTAAGAGCCTAAAAAAGGAGAGCCTTCCAATTGTTAATAATCATTAGAAGACTAACAAAGTTTTATCTTATCTTCAAAGATCATTGCCTCTAAAATTCCAGCCCCTTGGAGCTTCTATCTGCCAATTATCACCACTTTTAGGCAGACAAAGGGATAACTCATTTAAGATGTACATCCAACCTCAATAGCAAAGTGGCAATAGGGGAAACAAATGATTCACATATTCGCCATCTCTAAGACAGACATAAAAAGCAAGCAACGCGGGATAAGACTCGATTTACATATATATAGTTAGCAGCCTGTCTTGGGTATTAGGACTTTCGTTTCTTCGGGTACTTGCCGTGCCAAACTTACCTTCATCTTGGGTGTTAAGTCTGTTGAGTTCAAATGCTTACTTTGTAATGTCCAGTTTTCTACAAATTTTATGTTCAGGCTGTGGATTGATCTTTTGCCTTTGAAGAAATGGAATGCCTAGTTTTTCATTCCTCCCCATGTGTTGTCTAATCTACGTACACCGTTCTCTTCATACACATGTTACACATACACATACTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTATCATTTTTGGGCTTTCCATTTGGATATTCCACTCAAGGTTTTAAAACGCGTCTGTTAGGAAAAGGTTTCTATACCCTTATAAGAAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACATTACTACTAGAATCCATGTCTATCAAACTTTTCTCGTGGGATTTTGTGAATACTTTCTCTTGGCATGTGGGACGAAGTCATAGAGACTCTAAATATTGAATTAGACATAGAAGAGAGTTATAAATTCCTCAATTTTGAAGTTTCCCATTATGATGCTCAGAAGGTTTTTTCGACTATGTATCTAATCATCTGTTTCTTACCATAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGAATTGCCCCTTGCAAGTTGAAGTATGTGAGTAGCTTTATTGAAGGCATTTCAAAGTTCCCTTCTGTGCAGATCAATGAAAGTTGCTCTGATTGATTGTCTTCATCTTTCTTGTTCTTAAAATTGTACTCCTCCTTGTAAGGGTATAAAATGACGAGTCATTGTGGCACTTGTAAAATAAACAAGACTCTAATACGCTTGTTCCAGAGTCGTCCCAGTCTAGTTTACTCTGTGCCTATGAACTATGGAATCCTAAGAAATGACCTTTTCTTTATAAAAGGATACAATCTTGCAAATGCGTAAGAAGCTTCTGTTTATTAGACTTCTTATTGTTTATTAGAATTAGCTCACCGCCATTAGATATTGTTTGCTTCGGTCCGTTATGTATTGTAGTCAACTTCACTGTTTTAAAACGCATTTGCTAAGGAGAGGTTTTCACATCCTGATAAGAAATGCTTTGTTCCTCTCTTCAAGACTTCGTTATGGAATTTCACAG

mRNA sequence

TGATGATTTTTGGTGCAGAATTTTCCGATCCTCTGCTTCTCAAAATCTTGAACGAAGAAGATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGAATTGCCCCTTGCAAGTTGAAGTATGTGAGTAGCTTTATTGAAGGCATTTCAAAGTTCCCTTCTGTGCAGATCAATGAAAGTTGCTCTGATTGATTGTCTTCATCTTTCTTGTTCTTAAAATTGTACTCCTCCTTGTAAGGGTATAAAATGACGAGTCATTGTGGCACTTGTAAAATAAACAAGACTCTAATACGCTTGTTCCAGAGTCGTCCCAGTCTAGTTTACTCTGTGCCTATGAACTATGGAATCCTAAGAAATGACCTTTTCTTTATAAAAGGATACAATCTTGCAAATGCGTAAGAAGCTTCTGTTTATTAGACTTCTTATTGTTTATTAGAATTAGCTCACCGCCATTAGATATTGTTTGCTTCGGTCCGTTATGTATTGTAGTCAACTTCACTGTTTTAAAACGCATTTGCTAAGGAGAGGTTTTCACATCCTGATAAGAAATGCTTTGTTCCTCTCTTCAAGACTTCGTTATGGAATTTCACAG

Coding sequence (CDS)

ATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Protein sequence

MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPKEKPPSESG

Homology

[Close]

BLAST of Carg11435 vs. NCBI nr
Match: KAG7015122.1 (hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of Carg11435 vs. NCBI nr
Match: KAG6577120.1 (putative aspartic protease, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
           MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK
Sbjct: 137 MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 196

Query: 61  EKPPSESG 69
           EKPPSESG
Sbjct: 197 EKPPSESG 204

[Close]

BLAST of Carg11435 vs. NCBI nr
Match: KAG6600413.1 (hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031072.1 hypothetical protein SDJN02_05111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 6.8e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAEKNQK KGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of Carg11435 vs. NCBI nr
Match: ONK58886.1 (uncharacterized protein A4U43_C08F740 [Asparagus officinalis])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1   MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
           MTRGKQKIEAQR+NAEKNQKQKGSQFEARAVALKV CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 81  MTRGKQKIEAQRKNAEKNQKQKGSQFEARAVALKVTCPICKVQLANQNQLGDHYSSKHPK 140

Query: 61  EKPPSESG 69
           EKPPSESG
Sbjct: 141 EKPPSESG 148

[Close]

BLAST of Carg11435 vs. NCBI nr
Match: XP_042488538.1 (zinc finger protein 706-like isoform X1 [Macadamia integrifolia])

HSP 1 Score: 126.7 bits (317), Expect = 7.6e-26
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAEKNQKQKGSQFEARAVALK+ CPICKVQLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANQNQLGDHYASKHPK 60

Query: 61 EKPPSESG 69
          E+PPS+SG
Sbjct: 61 ERPPSDSG 68

[Close]

BLAST of Carg11435 vs. ExPASy Swiss-Prot
Match: Q5ZMM5 (Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.6e-05
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFE----ARAVALKVICPICKVQLANHNQLGDHYAS 60
          M RG+QKI++Q++NA+K  +QK  Q      A   AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of Carg11435 vs. ExPASy Swiss-Prot
Match: Q9Y5V0 (Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEK----NQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYAS 60
          M RG+QKI++Q++NA+K     +KQ   Q  A   AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of Carg11435 vs. ExPASy Swiss-Prot
Match: Q9D115 (Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEK----NQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYAS 60
          M RG+QKI++Q++NA+K     +KQ   Q  A   AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of Carg11435 vs. ExPASy TrEMBL
Match: B9S1M3 (C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQ EARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of Carg11435 vs. ExPASy TrEMBL
Match: A0A5D3CZW8 (Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003120 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAEKNQK KGSQ EARAVALKVICPICKVQLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of Carg11435 vs. ExPASy TrEMBL
Match: D7TFG3 (C2H2-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQFEARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of Carg11435 vs. ExPASy TrEMBL
Match: A0A443NRE9 (Zinc finger, C2H2 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00976100 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAEKNQKQKGSQFEARAVALK+ CPICKVQLAN NQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANQNQLVDHYASKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of Carg11435 vs. ExPASy TrEMBL
Match: A0A7J6XAA4 (C2H2-type domain-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_003736 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.3e-25
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQR+NAEKNQK KGSQFEARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRKNAEKNQKSKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS+S
Sbjct: 61 EKPPSDS 67

The following BLAST results are available for this feature:

BLAST of Carg11435 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015122.1	1.6e-28	100.00	hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577120.1	1.6e-28	100.00	putative aspartic protease, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6600413.1	6.8e-27	97.01	hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ONK58886.1	2.6e-26	94.12	uncharacterized protein A4U43_C08F740 [Asparagus officinalis]	[more]
XP_042488538.1	7.6e-26	91.18	zinc finger protein 706-like isoform X1 [Macadamia integrifolia]	[more]

BLAST of Carg11435 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZMM5	7.6e-05	38.57	Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1	[more]
Q9Y5V0	1.3e-04	38.57	Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1	[more]
Q9D115	1.3e-04	38.57	Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1	[more]

BLAST of Carg11435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B9S1M3	4.8e-26	94.03	C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 ...	[more]
A0A5D3CZW8	1.1e-25	92.65	Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
D7TFG3	1.8e-25	89.71	C2H2-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00...	[more]
A0A443NRE9	1.8e-25	91.18	Zinc finger, C2H2 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_009761...	[more]
A0A7J6XAA4	5.3e-25	89.55	C2H2-type domain-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX3...	[more]

BLAST of Carg11435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 e-value: 1.1E-4 score: 22.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21213	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	PANTHER	PTHR21213:SF0	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..64
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..66 e-value: 5.4E-18 score: 67.1
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 1..25 e-value: 1.1E-4 score: 23.0
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11435-RA	Carg11435-RA	mRNA