Carg11423 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCACCGAAACTGATCTCCGACGCAAAGCGCCGCACTCATCCTCTCGTTTGGCTTGCCGCCCTGCTCTGTACCGTAGTTTCGATCGCCGTCATAATCGGAGGCATCGTCATCTTCATCGGTTACCTAGTGATCCACCCTAGGGTTCCGATGATCGGCGTTATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGGCGTCTGGAAGTTCAATTGACGGTGGTGGTGAAGGCGGAGAACGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTCTTCCTCCATTTCCTAGGGATTAAGATCGCGCAGCTCGTGGCGAGGGATTTCGATGTGAGGAAGAACAGTTCTCTGATGCTGCCTTACGTAGTGCCTTCGAATTCGATTCCTCTGACGCCGGAGCAGATGGAGGAAGTGGATTACGCGTTGAAGTCGGATGTGAGCCGGTTCGATTTGATCGGGGATACGAGAGTTCAATGGCGCGTTGGATTGCTTGGATCTGTTAAGTACAGGTGCCATCTTCATTGCGTGCTTAAATTTCATCCTTCTAATGGAACTTACTTCAGTCCGCCTTGCAGCTCCAGAGCTAAATAA ATGCCACCGAAACTGATCTCCGACGCAAAGCGCCGCACTCATCCTCTCGTTTGGCTTGCCGCCCTGCTCTGTACCGTAGTTTCGATCGCCGTCATAATCGGAGGCATCGTCATCTTCATCGGTTACCTAGTGATCCACCCTAGGGTTCCGATGATCGGCGTTATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGGCGTCTGGAAGTTCAATTGACGGTGGTGGTGAAGGCGGAGAACGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTCTTCCTCCATTTCCTAGGGATTAAGATCGCGCAGCTCGTGGCGAGGGATTTCGATGTGAGGAAGAACAGTTCTCTGATGCTGCCTTACGTAGTGCCTTCGAATTCGATTCCTCTGACGCCGGAGCAGATGGAGGAAGTGGATTACGCGTTGAAGTCGGATGTGAGCCGGTTCGATTTGATCGGGGATACGAGAGTTCAATGGCGCGTTGGATTGCTTGGATCTGTTAAGTACAGGTGCCATCTTCATTGCGTGCTTAAATTTCATCCTTCTAATGGAACTTACTTCAGTCCGCCTTGCAGCTCCAGAGCTAAATAA ATGCCACCGAAACTGATCTCCGACGCAAAGCGCCGCACTCATCCTCTCGTTTGGCTTGCCGCCCTGCTCTGTACCGTAGTTTCGATCGCCGTCATAATCGGAGGCATCGTCATCTTCATCGGTTACCTAGTGATCCACCCTAGGGTTCCGATGATCGGCGTTATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGGCGTCTGGAAGTTCAATTGACGGTGGTGGTGAAGGCGGAGAACGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTCTTCCTCCATTTCCTAGGGATTAAGATCGCGCAGCTCGTGGCGAGGGATTTCGATGTGAGGAAGAACAGTTCTCTGATGCTGCCTTACGTAGTGCCTTCGAATTCGATTCCTCTGACGCCGGAGCAGATGGAGGAAGTGGATTACGCGTTGAAGTCGGATGTGAGCCGGTTCGATTTGATCGGGGATACGAGAGTTCAATGGCGCGTTGGATTGCTTGGATCTGTTAAGTACAGGTGCCATCTTCATTGCGTGCTTAAATTTCATCCTTCTAATGGAACTTACTTCAGTCCGCCTTGCAGCTCCAGAGCTAAATAA MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLDNFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSSLMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLKFHPSNGTYFSPPCSSRAK Homology
BLAST of Carg11423 vs. NCBI nr
Match: XP_022931289.1 (uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 uncharacterized protein LOC111810341 [Cucurbita pepo subsp. pepo] >KAG6577108.1 hypothetical protein SDJN03_24682, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015110.1 hypothetical protein SDJN02_22743, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Carg11423 vs. NCBI nr
Match: XP_022985334.1 (uncharacterized protein LOC111483375 [Cucurbita maxima]) HSP 1 Score: 391.3 bits (1004), Expect = 4.8e-105 Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0
BLAST of Carg11423 vs. NCBI nr
Match: XP_004150550.1 (uncharacterized protein LOC101214190 [Cucumis sativus]) HSP 1 Score: 342.4 bits (877), Expect = 2.6e-90 Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0
BLAST of Carg11423 vs. NCBI nr
Match: XP_008451870.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK16449.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]) HSP 1 Score: 334.0 bits (855), Expect = 9.2e-88 Identity = 164/200 (82.00%), Postives = 178/200 (89.00%), Query Frame = 0
BLAST of Carg11423 vs. NCBI nr
Match: KAA0040179.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]) HSP 1 Score: 332.0 bits (850), Expect = 3.5e-87 Identity = 163/200 (81.50%), Postives = 177/200 (88.50%), Query Frame = 0
BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A6J1ETW1 (uncharacterized protein LOC111437517 OS=Cucurbita moschata OX=3662 GN=LOC111437517 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 1.3e-108 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A6J1JD00 (uncharacterized protein LOC111483375 OS=Cucurbita maxima OX=3661 GN=LOC111483375 PE=4 SV=1) HSP 1 Score: 391.3 bits (1004), Expect = 2.3e-105 Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0
BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A0A0KX91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90 Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0
BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A5D3D1V8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002470 PE=4 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88 Identity = 164/200 (82.00%), Postives = 178/200 (89.00%), Query Frame = 0
BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A1S3BSH0 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88 Identity = 164/200 (82.00%), Postives = 178/200 (89.00%), Query Frame = 0
BLAST of Carg11423 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 218.4 bits (555), Expect = 5.2e-57 Identity = 106/198 (53.54%), Postives = 140/198 (70.71%), Query Frame = 0
BLAST of Carg11423 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). ) HSP 1 Score: 82.0 bits (201), Expect = 5.9e-16 Identity = 50/189 (26.46%), Postives = 89/189 (47.09%), Query Frame = 0
BLAST of Carg11423 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 5.1e-12 Identity = 48/189 (25.40%), Postives = 84/189 (44.44%), Query Frame = 0
BLAST of Carg11423 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10 Identity = 45/180 (25.00%), Postives = 79/180 (43.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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