Carg11423 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11423
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NDR1/HIN1-like protein 12
Location	Carg_Chr16: 2897881 .. 2898483 (+)
RNA-Seq Expression	Carg11423
Synteny	Carg11423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCGAAACTGATCTCCGACGCAAAGCGCCGCACTCATCCTCTCGTTTGGCTTGCCGCCCTGCTCTGTACCGTAGTTTCGATCGCCGTCATAATCGGAGGCATCGTCATCTTCATCGGTTACCTAGTGATCCACCCTAGGGTTCCGATGATCGGCGTTATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGGCGTCTGGAAGTTCAATTGACGGTGGTGGTGAAGGCGGAGAACGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTCTTCCTCCATTTCCTAGGGATTAAGATCGCGCAGCTCGTGGCGAGGGATTTCGATGTGAGGAAGAACAGTTCTCTGATGCTGCCTTACGTAGTGCCTTCGAATTCGATTCCTCTGACGCCGGAGCAGATGGAGGAAGTGGATTACGCGTTGAAGTCGGATGTGAGCCGGTTCGATTTGATCGGGGATACGAGAGTTCAATGGCGCGTTGGATTGCTTGGATCTGTTAAGTACAGGTGCCATCTTCATTGCGTGCTTAAATTTCATCCTTCTAATGGAACTTACTTCAGTCCGCCTTGCAGCTCCAGAGCTAAATAA

mRNA sequence

ATGCCACCGAAACTGATCTCCGACGCAAAGCGCCGCACTCATCCTCTCGTTTGGCTTGCCGCCCTGCTCTGTACCGTAGTTTCGATCGCCGTCATAATCGGAGGCATCGTCATCTTCATCGGTTACCTAGTGATCCACCCTAGGGTTCCGATGATCGGCGTTATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGGCGTCTGGAAGTTCAATTGACGGTGGTGGTGAAGGCGGAGAACGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTCTTCCTCCATTTCCTAGGGATTAAGATCGCGCAGCTCGTGGCGAGGGATTTCGATGTGAGGAAGAACAGTTCTCTGATGCTGCCTTACGTAGTGCCTTCGAATTCGATTCCTCTGACGCCGGAGCAGATGGAGGAAGTGGATTACGCGTTGAAGTCGGATGTGAGCCGGTTCGATTTGATCGGGGATACGAGAGTTCAATGGCGCGTTGGATTGCTTGGATCTGTTAAGTACAGGTGCCATCTTCATTGCGTGCTTAAATTTCATCCTTCTAATGGAACTTACTTCAGTCCGCCTTGCAGCTCCAGAGCTAAATAA

Coding sequence (CDS)

ATGCCACCGAAACTGATCTCCGACGCAAAGCGCCGCACTCATCCTCTCGTTTGGCTTGCCGCCCTGCTCTGTACCGTAGTTTCGATCGCCGTCATAATCGGAGGCATCGTCATCTTCATCGGTTACCTAGTGATCCACCCTAGGGTTCCGATGATCGGCGTTATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGGCGTCTGGAAGTTCAATTGACGGTGGTGGTGAAGGCGGAGAACGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTCTTCCTCCATTTCCTAGGGATTAAGATCGCGCAGCTCGTGGCGAGGGATTTCGATGTGAGGAAGAACAGTTCTCTGATGCTGCCTTACGTAGTGCCTTCGAATTCGATTCCTCTGACGCCGGAGCAGATGGAGGAAGTGGATTACGCGTTGAAGTCGGATGTGAGCCGGTTCGATTTGATCGGGGATACGAGAGTTCAATGGCGCGTTGGATTGCTTGGATCTGTTAAGTACAGGTGCCATCTTCATTGCGTGCTTAAATTTCATCCTTCTAATGGAACTTACTTCAGTCCGCCTTGCAGCTCCAGAGCTAAATAA

Protein sequence

MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLDNFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSSLMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLKFHPSNGTYFSPPCSSRAK

Homology

[Close]

BLAST of Carg11423 vs. NCBI nr
Match: XP_022931289.1 (uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 uncharacterized protein LOC111810341 [Cucurbita pepo subsp. pepo] >KAG6577108.1 hypothetical protein SDJN03_24682, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015110.1 hypothetical protein SDJN02_22743, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV
Sbjct: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTYFSPPCSSRAK
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of Carg11423 vs. NCBI nr
Match: XP_022985334.1 (uncharacterized protein LOC111483375 [Cucurbita maxima])

HSP 1 Score: 391.3 bits (1004), Expect = 4.8e-105
Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIG+IDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGIIDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKN S
Sbjct: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNGS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           LML Y V SNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV
Sbjct: 121 LMLHYEVASNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTYFSPPCSSRAK
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of Carg11423 vs. NCBI nr
Match: XP_004150550.1 (uncharacterized protein LOC101214190 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 2.6e-90
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQ DIAGRLEVQLT++++A+NDNAKAHASFSD+SFFLHFLGIKIAQLVA  F+VRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           +  PY V SNSIPL PEQME VD  LK+D+SRFDLIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTY S PCSSR K
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of Carg11423 vs. NCBI nr
Match: XP_008451870.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK16449.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 9.2e-88
Identity = 164/200 (82.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQ DIAGRLEVQLT+VV+A+NDNAKAHASFSD+SFFLHFL IKIAQLVA  F+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           +   Y V SNSIPL PEQME VDY LK+D+S F LIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTY   PCSSR K
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of Carg11423 vs. NCBI nr
Match: KAA0040179.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 3.5e-87
Identity = 163/200 (81.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQ DIAGRLEVQLT+VV+A+NDNAKAHASFSD+SFFLHFL IKIAQLVA  F+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           +   Y V SNSIPL PEQME VDY LK+D+S F LIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTY   PCSSR K
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A6J1ETW1 (uncharacterized protein LOC111437517 OS=Cucurbita moschata OX=3662 GN=LOC111437517 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.3e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV
Sbjct: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTYFSPPCSSRAK
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A6J1JD00 (uncharacterized protein LOC111483375 OS=Cucurbita maxima OX=3661 GN=LOC111483375 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.3e-105
Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIG+IDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGIIDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKN S
Sbjct: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNGS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           LML Y V SNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV
Sbjct: 121 LMLHYEVASNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTYFSPPCSSRAK
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A0A0KX91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQ DIAGRLEVQLT++++A+NDNAKAHASFSD+SFFLHFLGIKIAQLVA  F+VRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           +  PY V SNSIPL PEQME VD  LK+D+SRFDLIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTY S PCSSR K
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A5D3D1V8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002470 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 164/200 (82.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQ DIAGRLEVQLT+VV+A+NDNAKAHASFSD+SFFLHFL IKIAQLVA  F+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           +   Y V SNSIPL PEQME VDY LK+D+S F LIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTY   PCSSR K
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of Carg11423 vs. ExPASy TrEMBL
Match: A0A1S3BSH0 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 164/200 (82.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60
           MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120
           NFQ DIAGRLEVQLT+VV+A+NDNAKAHASFSD+SFFLHFL IKIAQLVA  F+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180
           +   Y V SNSIPL PEQME VDY LK+D+S F LIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYFSPPCSSRAK 201
           LKFHPSNGTY   PCSSR K
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of Carg11423 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 218.4 bits (555), Expect = 5.2e-57
Identity = 106/198 (53.54%), Postives = 140/198 (70.71%), Query Frame = 0


Query: 3   PKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLDNF 62
           P+L S  +  T P +W AA++C ++SI VI+GGI++F+GYLVIHPRVP+I V DAHLD  
Sbjct: 2   PRLTS--RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFL 61

Query: 63  QNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSSLM 122
           + DI G L+ QLT+V++ ENDNAKAHA F +T F L + G  IA L A +F+V K  S+ 
Sbjct: 62  KYDIVGVLQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPEFEVVKEKSMF 121

Query: 123 LPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLK 182
           LPY+V S  IPL P  M+ VDYA+K DV  F+L G +R +WRVG LGSVK+ C+L C L+
Sbjct: 122 LPYLVQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLR 181

Query: 183 FHPSNGTYFSPPCSSRAK 201
           F PS+ +Y   PC+S  K
Sbjct: 182 FRPSDHSYIPSPCTSAHK 197

[Close]

BLAST of Carg11423 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-16
Identity = 50/189 (26.46%), Postives = 89/189 (47.09%), Query Frame = 0


Query: 11  RRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLDNFQNDIAGRL 70
           R T+ + W AA  C +  + +I+GG++I I YLV  PR P + +  A+L+    D+   L
Sbjct: 167 RETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAAYLDMGFLL 226

Query: 71  EVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSSLMLPYVVPSN 130
              LT++    N + K+   FS  +F L++    IA      F V K +S+     + S+
Sbjct: 227 NGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHLVSS 286

Query: 131 SIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLKFH-PSNGT 190
            + L   Q  E+   +++     +L G    +  +G L    Y+ H HC +  + P  G 
Sbjct: 287 QVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHCSVSLNGPPLGA 346

Query: 191 YFSPPCSSR 199
             +  C+++
Sbjct: 347 MRARRCNTK 355

[Close]

BLAST of Carg11423 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-12
Identity = 48/189 (25.40%), Postives = 84/189 (44.44%), Query Frame = 0


Query: 11  RRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLDNFQNDIAGRL 70
           +RT P+   A + C ++ I +I+ G+++ + YL   PR P   +  A L+    D+   L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSSLMLPYVVPSN 130
              L VVV   N + K+   FS   F L+F    IA      F V K  S+   + + S+
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSS 247

Query: 131 SIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLKFH-PSNGT 190
            + +   Q +++   L +     +L G    +  +G L    Y  H  C +  + P  GT
Sbjct: 248 QVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAGT 307

Query: 191 YFSPPCSSR 199
             +  C+++
Sbjct: 308 MRARRCNTK 316

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BLAST of Carg11423 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 45/180 (25.00%), Postives = 79/180 (43.89%), Query Frame = 0


Query: 20  AALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLDNFQNDIAGRLEVQLTVVVK 79
           A + C ++ I +I+ G+++ + YL   PR P   +  A L+    D+   L   L VVV 
Sbjct: 5   ATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVN 64

Query: 80  AENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSSLMLPYVVPSNSIPLTPEQM 139
             N + K+   FS   F L+F    IA      F V K  S+   + + S+ + +   Q 
Sbjct: 65  FTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQS 124

Query: 140 EEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLKFH-PSNGTYFSPPCSSR 199
           +++   L +     +L G    +  +G L    Y  H  C +  + P  GT  +  C+++
Sbjct: 125 QDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAGTMRARRCNTK 184

The following BLAST results are available for this feature:

BLAST of Carg11423 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931289.1	2.7e-108	100.00	uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 unchar...	[more]
XP_022985334.1	4.8e-105	97.50	uncharacterized protein LOC111483375 [Cucurbita maxima]	[more]
XP_004150550.1	2.6e-90	83.00	uncharacterized protein LOC101214190 [Cucumis sativus]	[more]
XP_008451870.1	9.2e-88	82.00	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK16449.1 NDR1/HIN1-like p...	[more]
KAA0040179.1	3.5e-87	81.50	NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]	[more]

BLAST of Carg11423 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETW1	1.3e-108	100.00	uncharacterized protein LOC111437517 OS=Cucurbita moschata OX=3662 GN=LOC1114375...	[more]
A0A6J1JD00	2.3e-105	97.50	uncharacterized protein LOC111483375 OS=Cucurbita maxima OX=3661 GN=LOC111483375...	[more]
A0A0A0KX91	1.2e-90	83.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1	[more]
A0A5D3D1V8	4.4e-88	82.00	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BSH0	4.4e-88	82.00	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1	[more]

BLAST of Carg11423 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45320.1	5.2e-57	53.54	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G26350.1	5.9e-16	26.46	LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED ...	[more]
AT1G13050.1	5.1e-12	25.40	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13050.2	2.8e-10	25.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852:SF9	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 7..200
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 7..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11423-RA	Carg11423-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane