Carg10921 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10921
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 11323910 .. 11325469 (+)
RNA-Seq ExpressionCarg10921
SyntenyCarg10921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAATGGTGGGTCACGCATGCATCATCATTGCTCTCTTTGCGCTGGCAGATTGACGTGCGGGCCCTGGTTTGCTAAAAGCGTATCTGCCTGCTTCTCAATCAAGACAGGTGATTCTCTCTCTTCTTGGTGAAGATTATTGAGACCAGTTGCTAAAATAATAATATTTGCGGAGTTTGAAAAAAAAAAAAAGAAGAAGAAGTTTAGTTCTTGCCCTTATTGACAGGAGTTATCTAATTACAAAATAGTTTCACTATAAAATGTGGCTCATTTGATTGAAAACAAGTTATTACCCAATTTTCAAATATGGAAAGAATTTCACAACTTTTTTTTTTTTTTTTTGTGTGTTTTTTACTTGGCTGGGATTGGATGTCTTTAAAAGGTATATTCAACCAAAGATTTGTGAGGGGATGATTTTATTTTTCTTAACAAAAATTAAAAAAAACCACAAATGGGTATGAAAATTTGAAAAAGAAGCTCAATGATTGTTCTGTGAGGATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTGGTAGTTTACTTATAACTTTTCGGCTTACATGAAAATTGGATTATTTCTCATTGCTTGGCTTCTGGTTTGAACGATAAAAATGACAGTTTTCTCTTCTTTTATATATACACACAGACAAAACGAATACTTTGTTTTTTACTGTAGTTTTTTTTATTTTGTTTTGTAAAACAATTTTAAAAAGAAGTTATTTGGATTTTGTATGTATATCTTACTGTGCTTTTCATGTATAATTGTTCACCACCCTTTTTTCTCAATTTCCAAAGTTATATTTCAAGTTTCACTCTTATTGTAGTTTGATCCTTTTTTTATCGCAGGGCATGGACACAATAAGAACAGTAAAAAAAGAAGAAGATAGAATGACGACAATGAAATTTTGGACCCTTTGATTTTGATTGTCGGTGAAGTGAAGGAGGAGAAGGTACTGTAGGTACACTCTACCTGGAGGCTTAAGTATTTAGCAAGCGTTCATGAGTGAGGCACTCGGAGAAAAACAATGCAGCAGCAGCAGCAGCAGCAGCTTTTGTTGGGGGAAGCAAGCAGGCGATTGGGTACAGGTTTGAAAAGAGAAATAATTGAAGTGTTCTTTGTGTCATTGGCAGAGGCATTGGTACTGCGACAGATGAGACTGATATGATTTCTCACATTGTCTGCCATTTTTTCTATTTGATTTTATCTATCTGCCTGCAGGCTGCAACAGGGCGCTATTGTAAAGATTCCACATCCATTCACCTACACTGTGCTGCCCTGCCTTCCCCGCCCCATTACTCTCAGCTTTTTCCTTTTGCATATCTGCCTGTCTCTTGCTTCTCCACCAGGTACACGCACACTCCCTCCCTACACACTCCTTTCACTATTTCCACTTATCTTTGGCGTTTCCAAATTGTCCATTAATAAGAGCTTTTGTCTGTTTTTTACTTCATTTTTTGTCCCTTATTTGACAGAGGGGGAAGGGATTTTGTTAACTACTTCTTGTTTATGGTTTCTTTTCTACGGTTTAAAAGCTAG

mRNA sequence

ATGTTGAAATGGTGGGTCACGCATGCATCATCATTGCTCTCTTTGCGCTGGCAGATTGACGTGCGGGCCCTGGCTGCAACAGGGCGCTATTGTAAAGATTCCACATCCATTCACCTACACTGTGCTGCCCTGCCTTCCCCGCCCCATTACTCTCAGCTTTTTCCTTTTGCATATCTGCCTGTCTCTTGCTTCTCCACCAGAGGGGGAAGGGATTTTGTTAACTACTTCTTGTTTATGGTTTCTTTTCTACGGTTTAAAAGCTAG

Coding sequence (CDS)

ATGTTGAAATGGTGGGTCACGCATGCATCATCATTGCTCTCTTTGCGCTGGCAGATTGACGTGCGGGCCCTGGCTGCAACAGGGCGCTATTGTAAAGATTCCACATCCATTCACCTACACTGTGCTGCCCTGCCTTCCCCGCCCCATTACTCTCAGCTTTTTCCTTTTGCATATCTGCCTGTCTCTTGCTTCTCCACCAGAGGGGGAAGGGATTTTGTTAACTACTTCTTGTTTATGGTTTCTTTTCTACGGTTTAAAAGCTAG

Protein sequence

MLKWWVTHASSLLSLRWQIDVRALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLPVSCFSTRGGRDFVNYFLFMVSFLRFKS
Homology
[Close]
BLAST of Carg10921 vs. NCBI nr
Match: KAG7030371.1 (hypothetical protein SDJN02_08718, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 3.0e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MLKWWVTHASSLLSLRWQIDVRALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLP 60
          MLKWWVTHASSLLSLRWQIDVRALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLP
Sbjct: 1  MLKWWVTHASSLLSLRWQIDVRALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLP 60

Query: 61 VSCFSTRGGRDFVNYFLFMVSFLRFKS 88
          VSCFSTRGGRDFVNYFLFMVSFLRFKS
Sbjct: 61 VSCFSTRGGRDFVNYFLFMVSFLRFKS 87

[Close]
BLAST of Carg10921 vs. NCBI nr
Match: KAG6599385.1 (hypothetical protein SDJN03_09163, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 23  ALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLPVSCFSTRGGRDFVNYFLFMVSF 82
           ALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLPVSCFSTRGGRDFVNYFLFMVSF
Sbjct: 37  ALAATGRYCKDSTSIHLHCAALPSPPHYSQLFPFAYLPVSCFSTRGGRDFVNYFLFMVSF 96

Query: 83  LRFKS 88
           LR KS
Sbjct: 97  LRVKS 101

The following BLAST results are available for this feature:
BLAST of Carg10921 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030371.13.0e-43100.00hypothetical protein SDJN02_08718, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6599385.11.6e-2898.46hypothetical protein SDJN03_09163, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg10921 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10921 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10921 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10921-RACarg10921-RAmRNA