Carg10839 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10839
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Carg_Chr05: 11852856 .. 11854043 (-)
RNA-Seq Expression	Carg10839
Synteny	Carg10839

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGGTAGAGCTTTTTTTCGTAGATCGCGAGGATCGTTCGATCAAGTAATGTCTGGTTCTTAATTATTGTGATTGCAACTCTTCGCGAAATTAGCTGAAAATTGAACAGACCTGTTCCTTCCTCTGTCGAAATTTCTTTTACAATGTTCCATGAATTTCCCCTAACTTTCAATTTTTGGTATCAACATATGTTTTAAAAAGCCATAAAAATATTTTAATTTTATCAATTCATTGACTCAATTTAAATGACACATTTAATCTGTTAATTTTTTAATTTAAAGAAATATCCGATAAAGTGAACCATCTTCCATTTTTAATTTTATATCTATTATACAAAATTATAAATATTATTGTTTTAATATAAAAATCCATCTTAAATTTAATTTTTAAATTAAAAAAATAACACCCCATATTATATATCTTTTGCATACGTGTTCGATAGTTGAACTTCAACTAAAATTGAAATTATTTTTAAATGTTACAAATGACGAAAATTAAAAGTTAGAAGACTAACAGTTCAATTAATTATTTAAAAAAAATGATGAATATCGTTGACAAATTTATTACAATAATTAATTATTATGATTTTATAAATTCGGGGTAAAATATCTTAAATTATAAAATTCGAGTATATAATTTAGATAATTTCTATTGGTATGTTTTGTTTTCGATTTATTTTCAGGAATTTAATTATTTTATATTTATTTTATAATTTGTTTTGCAAAGCCAGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCACCATTAAGTTAAGGAAAGGGTAA

mRNA sequence

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCACCATTAAGTTAAGGAAAGGGTAA

Coding sequence (CDS)

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCACCATTAAGTTAAGGAAAGGGTAA

Protein sequence

MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRRCSSVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG

Homology

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: KAG7030453.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.4 bits (825), Expect = 2.1e-84
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRRCS 120
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRRCS
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRRCS 120

Query: 121 SVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG 154
           SVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG
Sbjct: 121 SVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG 153

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: KAG6599476.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_038877422.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-49
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAA +V  E TRNL A YPIEFLFDLDMVLSGADDFGCCQISA+DSLVADLP VVADVCA
Sbjct: 1   MAAAAVMTEPTRNLPATYPIEFLFDLDMVLSGADDFGCCQISATDSLVADLPIVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRC ++GQPP+   STLIRR
Sbjct: 61  VCLEDFLPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCHVAGQPPD---STLIRR 115

[Close]

BLAST of Carg10839 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 43  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVA 102
           AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 103 NCCPLCRCLISGQPPE 110
           N CP+CR  +    P+
Sbjct: 251 NSCPVCRFELPTDDPD 266

[Close]

BLAST of Carg10839 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-09
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 43  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVAN 102
           AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 103 CCPLCRCLISGQP 108
            CP+CR  +  +P
Sbjct: 235 SCPVCRFELPSEP 247

[Close]

BLAST of Carg10839 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-09
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 59  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE 110
           CAVC++DF    + KQ+PC H+YH+ C+  WL + N CP+CR  +    P+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of Carg10839 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 42  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP 101
           SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP
Sbjct: 194 SAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCP 253

Query: 102 LCRCLISGQP 108
           +CR  +   P
Sbjct: 254 VCRFELPSDP 263

[Close]

BLAST of Carg10839 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 20/42 (47.62%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 59  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           C++C +DF+ DE  +++PC H+YHE+CI  WL + + CP+CR
Sbjct: 253 CSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICR 294

[Close]

BLAST of Carg10839 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Carg10839 vs. ExPASy TrEMBL
Match: A0A0A0LKR7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.2e-46
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 115

[Close]

BLAST of Carg10839 vs. ExPASy TrEMBL
Match: A0A5A7V2P4 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00540 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.8e-44
Identity = 91/119 (76.47%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60
           MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116

[Close]

BLAST of Carg10839 vs. ExPASy TrEMBL
Match: A0A1S4DZX3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.8e-44
Identity = 91/119 (76.47%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60
           MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116

[Close]

BLAST of Carg10839 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA---SDSLVADLPTVVAD 60
           MAAV+V AETTRNLAAAYP+E LFDLDMVLSG DDFGCC ++A   SDS+VADLPTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPS 113
           VCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCPLCR  +   PP S S
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVEPPPPPSTS 115

[Close]

BLAST of Carg10839 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 47  LVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           ++ D   V   VCA+C E+F   E+GK++ C H+YH SCI SWL + N CP+CR
Sbjct: 126 IITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of Carg10839 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 43  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVA 102
           AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 103 NCCPLCRCLISGQPPE 110
           N CP+CR  +    P+
Sbjct: 251 NSCPVCRFELPTDDPD 266

[Close]

BLAST of Carg10839 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-10
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 43  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVAN 102
           AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 103 CCPLCRCLISGQP 108
            CP+CR  +  +P
Sbjct: 235 SCPVCRFELPSEP 247

[Close]

BLAST of Carg10839 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 8.2e-10
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 58  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           +CAVC EDF   E  +++PC H+YH  CI  WL+  N CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of Carg10839 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 42  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP 101
           SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP
Sbjct: 194 SAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCP 253

Query: 102 LCRCLISGQP 108
           +CR  +   P
Sbjct: 254 VCRFELPSDP 263

The following BLAST results are available for this feature:

BLAST of Carg10839 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030453.1	2.1e-84	100.00	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599476.1	1.9e-61	100.00	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_022946863.1	4.3e-61	99.15	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_023545409.1	1.2e-60	98.31	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038877422.1	4.9e-49	83.05	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]

BLAST of Carg10839 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	1.8e-09	38.16	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q940T5	6.7e-09	36.99	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
P0CH30	6.7e-09	43.14	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9SNB6	1.5e-08	38.57	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q9VHI7	2.0e-08	47.62	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]

BLAST of Carg10839 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G511	2.1e-61	99.15	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LKR7	4.2e-46	77.97	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 P...	[more]
A0A5A7V2P4	8.8e-44	76.47	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZX3	8.8e-44	76.47	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
A0A6J1DM93	1.5e-43	78.26	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Carg10839 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	1.1e-11	48.15	RING/U-box superfamily protein	[more]
AT3G19950.1	1.3e-10	38.16	RING/U-box superfamily protein	[more]
AT5G59550.1	4.8e-10	36.99	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G60080.1	8.2e-10	53.49	RING/U-box superfamily protein	[more]
AT3G46620.1	1.1e-09	38.57	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 2.5E-7 score: 40.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 1.8E-11 score: 44.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.784338
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 48..107 e-value: 2.0E-16 score: 61.0
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 21..104
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 21..104
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10839-RA	Carg10839-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity