Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACAGAAGGATGGGAGCCTGTGCGACGAAGCCAAAGGTTCTCAAGCCTGACTCCGGCGACGCTCCGGCTCCGGATCCGGCGCCAGAGCCTTCTCCGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCACCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGTAATTTATTTGAACATTTTTTTTTAATCTGTTTGGATCGTGAGGGGAAAAAAAAAAAAAAAAAGAATCTTGATGAACATGAGTAATAATGCAATGGTGGTTGTCTTTTCTCTGTCAGCCCCTGTTTTTATCTTTTATTTTTTTCCCTTTTAATGTCTAATAAATTTATTAATTTAAAAAATGGATGTAATTTATTAATGAAAAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAGGAAGAGATCCCACCGGAATCTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGGAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCAGGACCAATTGAAAGCAATATCAAAGTCGAAGTTCCCGATGAGAACAAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA
mRNA sequence
ACACAGAAGGATGGGAGCCTGTGCGACGAAGCCAAAGGTTCTCAAGCCTGACTCCGGCGACGCTCCGGCTCCGGATCCGGCGCCAGAGCCTTCTCCGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCACCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAGGAAGAGATCCCACCGGAATCTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGGAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCAGGACCAATTGAAAGCAATATCAAAGTCGAAGTTCCCGATGAGAACAAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA
Coding sequence (CDS)
ATGGGAGCCTGTGCGACGAAGCCAAAGGTTCTCAAGCCTGACTCCGGCGACGCTCCGGCTCCGGATCCGGCGCCAGAGCCTTCTCCGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCACCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAGGAAGAGATCCCACCGGAATCTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGGAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCAGGACCAATTGAAAGCAATATCAAAGTCGAAGTTCCCGATGAGAACAAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA
Protein sequence
MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKPRCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKPSETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVISN
Homology
BLAST of Carg10555 vs. NCBI nr
Match:
KAG7034425.1 (hypothetical protein SDJN02_04154 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP
Sbjct: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. NCBI nr
Match:
XP_022949635.1 (pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita moschata])
HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLKPDSGDAPAP PAPEPSPEKTVPETKLE+GTSDAQGTEIVDEDKVDSKP
Sbjct: 1 MGACATKPKVLKPDSGDAPAPAPAPEPSPEKTVPETKLEDGTSDAQGTEIVDEDKVDSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. NCBI nr
Match:
KAG6604268.1 (hypothetical protein SDJN03_04877, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLKPDSGDAPAP PAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP
Sbjct: 1 MGACATKPKVLKPDSGDAPAPAPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDEN PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENTPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. NCBI nr
Match:
XP_023543402.1 (early nodulin-75-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLK DSGDAPAP PAPE S EKTVPETKLENG+SDAQGTEIVDEDKVDSKP
Sbjct: 1 MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLFNDQEKTAAADPS KEEIPPE+EKKMNPPPEEKPSETIPPETEKKINPPTE+KP
Sbjct: 61 RCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
SETNPPEPEPPVSDSVTENA PIESN KVEV DEN+PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. NCBI nr
Match:
XP_022979013.1 (early nodulin-75-like [Cucurbita maxima])
HSP 1 Score: 294.7 bits (753), Expect = 5.6e-76
Identity = 165/181 (91.16%), Postives = 170/181 (93.92%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLK DSG+APAP PAPE SPEKTV ETKLENG+S AQGTEIVDEDKV SKP
Sbjct: 1 MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLF+DQEKTAAADPSEKEEIP E+EKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61 RCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
ETNPPEPEPPVSDSVTENA PIESN KVEV DEN+PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 FETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. ExPASy TrEMBL
Match:
A0A6J1GDB0 (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111452967 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 5.8e-87
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLKPDSGDAPAP PAPEPSPEKTVPETKLE+GTSDAQGTEIVDEDKVDSKP
Sbjct: 1 MGACATKPKVLKPDSGDAPAPAPAPEPSPEKTVPETKLEDGTSDAQGTEIVDEDKVDSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. ExPASy TrEMBL
Match:
A0A6J1IUX1 (early nodulin-75-like OS=Cucurbita maxima OX=3661 GN=LOC111478786 PE=4 SV=1)
HSP 1 Score: 294.7 bits (753), Expect = 2.7e-76
Identity = 165/181 (91.16%), Postives = 170/181 (93.92%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPKVLK DSG+APAP PAPE SPEKTV ETKLENG+S AQGTEIVDEDKV SKP
Sbjct: 1 MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60
Query: 61 RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
RCLSHLF+DQEKTAAADPSEKEEIP E+EKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61 RCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
ETNPPEPEPPVSDSVTENA PIESN KVEV DEN+PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 FETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVIS 180
Query: 181 N 182
N
Sbjct: 181 N 181
BLAST of Carg10555 vs. ExPASy TrEMBL
Match:
A0A0A0KFS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485140 PE=4 SV=1)
HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 94/185 (50.81%), Postives = 106/185 (57.30%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPK LK +SGDAP PA ETK ++ + +VD+DKVDSKP
Sbjct: 1 MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60
Query: 61 RCLSHLF-----NDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPP 120
L+ LF ++EKT ADP EK+ ET PPETEK+INP
Sbjct: 61 PSLTDLFIHQKEGNKEKTEDADPPEKQ-------------------ETNPPETEKQINPL 120
Query: 121 TEEKPSETNPPEPEPPVSDSVTENAGPIESN-----IKVEVPDENKPPPEKTESPEKPTE 176
EEKPSE NP PEP VSDSVTEN E IKVEV EN PPEKTES EKPTE
Sbjct: 121 PEEKPSENNP--PEPVVSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTE 154
BLAST of Carg10555 vs. ExPASy TrEMBL
Match:
A0A5A7SHD6 (Pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00100 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 98/206 (47.57%), Postives = 113/206 (54.85%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPK +K +SG+AP PA ETK ++ + +VD+DKVDSKP
Sbjct: 1 MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60
Query: 61 RCLSHLFND------QEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINP 120
R LS+LF D +EKT ADP EK+ ET PPETEK+I+P
Sbjct: 61 RSLSNLFIDDQKEGNKEKTEGADPPEKQ-------------------ETNPPETEKQIDP 120
Query: 121 PTEEKPSETNPPEPEPPVSDSVTENAGPI--------------------ESNIKVEVPDE 180
EEKPSE NP PEP VSDSVTEN I E IKVEV E
Sbjct: 121 LPEEKPSENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTE 174
BLAST of Carg10555 vs. ExPASy TrEMBL
Match:
A0A1S3B2G7 (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485247 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 98/206 (47.57%), Postives = 113/206 (54.85%), Query Frame = 0
Query: 1 MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
MGACATKPK +K +SG+AP PA ETK ++ + +VD+DKVDSKP
Sbjct: 1 MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60
Query: 61 RCLSHLFND------QEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINP 120
R LS+LF D +EKT ADP EK+ ET PPETEK+I+P
Sbjct: 61 RSLSNLFIDDQKEGNKEKTEGADPPEKQ-------------------ETNPPETEKQIDP 120
Query: 121 PTEEKPSETNPPEPEPPVSDSVTENAGPI--------------------ESNIKVEVPDE 180
EEKPSE NP PEP VSDSVTEN I E IKVEV E
Sbjct: 121 LPEEKPSENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTE 174
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7034425.1 | 3.7e-88 | 100.00 | hypothetical protein SDJN02_04154 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| XP_022949635.1 | 1.2e-86 | 98.90 | pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita moschata] | [more] |
| KAG6604268.1 | 1.6e-86 | 98.90 | hypothetical protein SDJN03_04877, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023543402.1 | 3.2e-79 | 93.37 | early nodulin-75-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022979013.1 | 5.6e-76 | 91.16 | early nodulin-75-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GDB0 | 5.8e-87 | 98.90 | pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucurbita moschat... | [more] |
| A0A6J1IUX1 | 2.7e-76 | 91.16 | early nodulin-75-like OS=Cucurbita maxima OX=3661 GN=LOC111478786 PE=4 SV=1 | [more] |
| A0A0A0KFS6 | 1.1e-21 | 50.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485140 PE=4 SV=1 | [more] |
| A0A5A7SHD6 | 1.5e-21 | 47.57 | Pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumi... | [more] |
| A0A1S3B2G7 | 1.5e-21 | 47.57 | pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
