Carg10555 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10555
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpollen-specific leucine-rich repeat extensin-like protein 1
LocationCarg_Chr03: 7483753 .. 7484513 (-)
RNA-Seq ExpressionCarg10555
SyntenyCarg10555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACAGAAGGATGGGAGCCTGTGCGACGAAGCCAAAGGTTCTCAAGCCTGACTCCGGCGACGCTCCGGCTCCGGATCCGGCGCCAGAGCCTTCTCCGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCACCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGTAATTTATTTGAACATTTTTTTTTAATCTGTTTGGATCGTGAGGGGAAAAAAAAAAAAAAAAAGAATCTTGATGAACATGAGTAATAATGCAATGGTGGTTGTCTTTTCTCTGTCAGCCCCTGTTTTTATCTTTTATTTTTTTCCCTTTTAATGTCTAATAAATTTATTAATTTAAAAAATGGATGTAATTTATTAATGAAAAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAGGAAGAGATCCCACCGGAATCTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGGAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCAGGACCAATTGAAAGCAATATCAAAGTCGAAGTTCCCGATGAGAACAAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA

mRNA sequence

ACACAGAAGGATGGGAGCCTGTGCGACGAAGCCAAAGGTTCTCAAGCCTGACTCCGGCGACGCTCCGGCTCCGGATCCGGCGCCAGAGCCTTCTCCGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCACCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAGGAAGAGATCCCACCGGAATCTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGGAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCAGGACCAATTGAAAGCAATATCAAAGTCGAAGTTCCCGATGAGAACAAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA

Coding sequence (CDS)

ATGGGAGCCTGTGCGACGAAGCCAAAGGTTCTCAAGCCTGACTCCGGCGACGCTCCGGCTCCGGATCCGGCGCCAGAGCCTTCTCCGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCACCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAGGAAGAGATCCCACCGGAATCTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGGAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCAGGACCAATTGAAAGCAATATCAAAGTCGAAGTTCCCGATGAGAACAAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA

Protein sequence

MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKPRCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKPSETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVISN
Homology
BLAST of Carg10555 vs. NCBI nr
Match: KAG7034425.1 (hypothetical protein SDJN02_04154 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP
Sbjct: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
           SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. NCBI nr
Match: XP_022949635.1 (pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita moschata])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLKPDSGDAPAP PAPEPSPEKTVPETKLE+GTSDAQGTEIVDEDKVDSKP
Sbjct: 1   MGACATKPKVLKPDSGDAPAPAPAPEPSPEKTVPETKLEDGTSDAQGTEIVDEDKVDSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
           SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. NCBI nr
Match: KAG6604268.1 (hypothetical protein SDJN03_04877, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLKPDSGDAPAP PAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP
Sbjct: 1   MGACATKPKVLKPDSGDAPAPAPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
           SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDEN PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENTPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. NCBI nr
Match: XP_023543402.1 (early nodulin-75-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLK DSGDAPAP PAPE S EKTVPETKLENG+SDAQGTEIVDEDKVDSKP
Sbjct: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLFNDQEKTAAADPS KEEIPPE+EKKMNPPPEEKPSETIPPETEKKINPPTE+KP
Sbjct: 61  RCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
           SETNPPEPEPPVSDSVTENA PIESN KVEV DEN+PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. NCBI nr
Match: XP_022979013.1 (early nodulin-75-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 5.6e-76
Identity = 165/181 (91.16%), Postives = 170/181 (93.92%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLK DSG+APAP PAPE SPEKTV ETKLENG+S AQGTEIVDEDKV SKP
Sbjct: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLF+DQEKTAAADPSEKEEIP E+EKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61  RCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
            ETNPPEPEPPVSDSVTENA PIESN KVEV DEN+PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 FETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. ExPASy TrEMBL
Match: A0A6J1GDB0 (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111452967 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.8e-87
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLKPDSGDAPAP PAPEPSPEKTVPETKLE+GTSDAQGTEIVDEDKVDSKP
Sbjct: 1   MGACATKPKVLKPDSGDAPAPAPAPEPSPEKTVPETKLEDGTSDAQGTEIVDEDKVDSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
           SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. ExPASy TrEMBL
Match: A0A6J1IUX1 (early nodulin-75-like OS=Cucurbita maxima OX=3661 GN=LOC111478786 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.7e-76
Identity = 165/181 (91.16%), Postives = 170/181 (93.92%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPKVLK DSG+APAP PAPE SPEKTV ETKLENG+S AQGTEIVDEDKV SKP
Sbjct: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120
           RCLSHLF+DQEKTAAADPSEKEEIP E+EKKMNPPPEEKPSETIPPETEKKINPPTEEKP
Sbjct: 61  RCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAGPIESNIKVEVPDENKPPPEKTESPEKPTETEEPVIKVIS 180
            ETNPPEPEPPVSDSVTENA PIESN KVEV DEN+PPPEKTESPEKPTETEEPVIKVIS
Sbjct: 121 FETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVIS 180

Query: 181 N 182
           N
Sbjct: 181 N 181

BLAST of Carg10555 vs. ExPASy TrEMBL
Match: A0A0A0KFS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485140 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 94/185 (50.81%), Postives = 106/185 (57.30%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPK LK +SGDAP   PA          ETK ++   +     +VD+DKVDSKP
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLF-----NDQEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINPP 120
             L+ LF      ++EKT  ADP EK+                   ET PPETEK+INP 
Sbjct: 61  PSLTDLFIHQKEGNKEKTEDADPPEKQ-------------------ETNPPETEKQINPL 120

Query: 121 TEEKPSETNPPEPEPPVSDSVTENAGPIESN-----IKVEVPDENKPPPEKTESPEKPTE 176
            EEKPSE NP  PEP VSDSVTEN    E       IKVEV  EN  PPEKTES EKPTE
Sbjct: 121 PEEKPSENNP--PEPVVSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTE 154

BLAST of Carg10555 vs. ExPASy TrEMBL
Match: A0A5A7SHD6 (Pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00100 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 98/206 (47.57%), Postives = 113/206 (54.85%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPK +K +SG+AP   PA          ETK ++   +     +VD+DKVDSKP
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLFND------QEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINP 120
           R LS+LF D      +EKT  ADP EK+                   ET PPETEK+I+P
Sbjct: 61  RSLSNLFIDDQKEGNKEKTEGADPPEKQ-------------------ETNPPETEKQIDP 120

Query: 121 PTEEKPSETNPPEPEPPVSDSVTENAGPI--------------------ESNIKVEVPDE 180
             EEKPSE NP  PEP VSDSVTEN   I                    E  IKVEV  E
Sbjct: 121 LPEEKPSENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTE 174

BLAST of Carg10555 vs. ExPASy TrEMBL
Match: A0A1S3B2G7 (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485247 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 98/206 (47.57%), Postives = 113/206 (54.85%), Query Frame = 0

Query: 1   MGACATKPKVLKPDSGDAPAPDPAPEPSPEKTVPETKLENGTSDAQGTEIVDEDKVDSKP 60
           MGACATKPK +K +SG+AP   PA          ETK ++   +     +VD+DKVDSKP
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLFND------QEKTAAADPSEKEEIPPESEKKMNPPPEEKPSETIPPETEKKINP 120
           R LS+LF D      +EKT  ADP EK+                   ET PPETEK+I+P
Sbjct: 61  RSLSNLFIDDQKEGNKEKTEGADPPEKQ-------------------ETNPPETEKQIDP 120

Query: 121 PTEEKPSETNPPEPEPPVSDSVTENAGPI--------------------ESNIKVEVPDE 180
             EEKPSE NP  PEP VSDSVTEN   I                    E  IKVEV  E
Sbjct: 121 LPEEKPSENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTE 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7034425.13.7e-88100.00hypothetical protein SDJN02_04154 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022949635.11.2e-8698.90pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita moschata][more]
KAG6604268.11.6e-8698.90hypothetical protein SDJN03_04877, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023543402.13.2e-7993.37early nodulin-75-like [Cucurbita pepo subsp. pepo][more]
XP_022979013.15.6e-7691.16early nodulin-75-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GDB05.8e-8798.90pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucurbita moschat... [more]
A0A6J1IUX12.7e-7691.16early nodulin-75-like OS=Cucurbita maxima OX=3661 GN=LOC111478786 PE=4 SV=1[more]
A0A0A0KFS61.1e-2150.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485140 PE=4 SV=1[more]
A0A5A7SHD61.5e-2147.57Pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumi... [more]
A0A1S3B2G71.5e-2147.57pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10555-RACarg10555-RAmRNA