Carg10283 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10283
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSnurportin-1
LocationCarg_Chr10: 232324 .. 234198 (-)
RNA-Seq ExpressionCarg10283
SyntenyCarg10283
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACACAGCTGAGTTTTGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCTGTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGGCATACCTTTTGTCAAGGATGATCTATTATTTTACAAGTAAGATTTATCATCAAGCAATGATTTAATACATTGCGAGTTCTCCTTCTCCTTTTAAATGAGGTTTTAATTTTATTTTCTTTCATGTATAATTTTTCATTTAGTTGATAACCTCTGTTATCTGGTATTGGAATATTTTGAAACCTGTGGAACACTCCTTATGTACATGTAGGATTACATATTTAACAATTTTCAAGTTATAATGTTATGATGCTTATGCTTGATAATTGCTATGCTCTGTTCTTCTTGTTAAGTTATTTCTTTCATTTTATGAATCTGTTTCTGTGCTTACAAGGTATAACTTCATCCATCACGTATTAAGAAGTTGTCTTTGTTCTAGGCATTCCCATTACCAGCCAGGTACCCCACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTACTTTATCTCTGCATTTCTTGTTATTAAAAAAAAACTATATGAATGTCTGCAATTATTTTCTTCCTTTCTTTTTCTTTTTTATAAATAATGTTGCCACTATCTTAGTTTCTAGTCAATTGCAGTGGTCAATGATCCATTTTTGTGATACGACATGGATCTGTTCTCTCTCTCTATCTCTCTCGTGCAGTTTATAATGCCAATACTGCCTTATTTGAATGATCAGCTGGTTTTGGAGCTACAAGGTGATGGAAAGGGTGCTACATTAGATGATCCTTCTGTGGACATTGGTTGCTTAGATGGTGACTTGATCGAAAAGGTTTTGTTGATCCAAATTTAACCCTTTCTATGGTTCATTAGTTTTAAAATTCTTTTGTTTATTACATGTTGCTTCCTTCGACTACATTTTTGCTTGCAATGAGGTCTGTGGTTATTATGTCTTCTTTCTGTCCTTGTTGGTTTGTTGTGTAATTTGGCATGGTACCTATGTCACCATATCTTAGTTTTAATGTTGTTATTGGGGATTGTGTTAGCTGAAGAAACTGTTGCTTGATATTGGCATCTCTCTCTCTCTCTCTCTCTCTCTCTTTGCATCTCATATTTTGGTCTCCCTTTCTGTTACATACATCCCTTCTCAATGACTTCATTTCTTTTCACTTATTTGGCTCCCCTGCTATGATATCCCTTGGTCACTCTACTCTCTTTTTATTCTTTGGTTTAGATTCTTACGGATGTTTGTAGTGGTTGTGGTCCTCAGAGTCAGGCTTATCATTCTATGTTGAAGACATTTTGCGTCCTCTTCTTTGACTAGACTTTTATGGTTAACGTGTTTATTTGGTATCTCATGAGACATACTGTTGGGAAGGATCAAGAGGGTGTAGACGATTATGGGAGGGGTTCTGGGAGGAGATTTTTGTTTAACTCACTTCAATAGCCCATTTTTGTCAATGCCACGAGTTTCATGCATGCAGGTTTTCTGTTGTTATTTGTTACCAACATTTGAGGTTTCTTCTTTGTCAGCAAGTAAATACCAGAATTGCTTGAATTTTCAGTTAGGGTTTGTCTTCAGGTAATCTATTTCGATTTATCATTGTTGATGGTGGGTTGACCATTGTGGATGGGAGGATTCAGAGGGTAGATTTACATTACACTGGCAAGGTCAATCGAGCTCGAGGATAGTTACTCCAAGGTTTGTGCTAAATATCATACTTGTAGGGTCAAATCATATTCA

mRNA sequence

ATGATTACACAGCTGAGTTTTGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCTGTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGGCATACCTTTTGTCAAGGATGATCTATTATTTTACAAGCATTCCCATTACCAGCCAGGTACCCCACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTGATGGAAAGGGTGCTACATTAGATGATCCTTCTGTGGACATTGGTTGCTTAGATGGTAATCTATTTCGATTTATCATTGTTGATGGTGGGTTGACCATTGTGGATGGGAGGATTCAGAGGGTAGATTTACATTACACTGGCAAGGTCAATCGAGCTCGAGGATAGTTACTCCAAGGTTTGTGCTAAATATCATACTTGTAGGGTCAAATCATATTCA

Coding sequence (CDS)

ATGATTACACAGCTGAGTTTTGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCTGTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGGCATACCTTTTGTCAAGGATGATCTATTATTTTACAAGCATTCCCATTACCAGCCAGGTACCCCACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTGATGGAAAGGGTGCTACATTAGATGATCCTTCTGTGGACATTGGTTGCTTAGATGGTAATCTATTTCGATTTATCATTGTTGATGGTGGGTTGACCATTGTGGATGGGAGGATTCAGAGGGTAGATTTACATTACACTGGCAAGGTCAATCGAGCTCGAGGATAG

Protein sequence

MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLDGNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG
Homology
BLAST of Carg10283 vs. NCBI nr
Match: KAG7023065.1 (hypothetical protein SDJN02_14089, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 3.6e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMI 60
           MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMI
Sbjct: 1   MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMI 60

Query: 61  YYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLD 120
           YYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLD
Sbjct: 61  YYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLD 120

Query: 121 GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG 157
           GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG
Sbjct: 121 GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG 156

BLAST of Carg10283 vs. NCBI nr
Match: KAG6589387.1 (hypothetical protein SDJN03_14810, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-53
Identity = 118/141 (83.69%), Postives = 121/141 (85.82%), Query Frame = 0

Query: 5   LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFT 64
           LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFT
Sbjct: 25  LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFT 84

Query: 65  S-----------------IPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGA 124
           +                 IPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGA
Sbjct: 85  TEFCFFWLNSKLVETGACIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGA 144

Query: 125 TLDDPSVDIGCLDGNLFRFII 129
           TLDDPSVDIGCLDG+L   +I
Sbjct: 145 TLDDPSVDIGCLDGDLIEKVI 165

BLAST of Carg10283 vs. NCBI nr
Match: XP_022921813.1 (uncharacterized protein LOC111429956 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-42
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = 0

Query: 4   QLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYF 63
           +LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQE YLLSRMIYYF
Sbjct: 37  ELSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEPYLLSRMIYYF 96

Query: 64  TSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGAT 109
           T IPITSQV HLHWSGRMRIAVDMLLTQIKWTSSKPTA  G GAT
Sbjct: 97  TCIPITSQVHHLHWSGRMRIAVDMLLTQIKWTSSKPTAA-GFGAT 140

BLAST of Carg10283 vs. NCBI nr
Match: XP_038879771.1 (snurportin-1 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 43/65 (66.15%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 102 GDGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGK 156
           GDG  AT DDP VD GCLD           GNL RF I DGGLTIVDGRIQ  DL YTGK
Sbjct: 324 GDGNVATSDDPPVDFGCLDGDLIKKLGLSPGNLLRFTIGDGGLTIVDGRIQGADLQYTGK 383

BLAST of Carg10283 vs. NCBI nr
Match: XP_022135463.1 (snurportin-1 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-11
Identity = 42/65 (64.62%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 102 GDGKGATLDDPSVDIGCLDG-----------NLFRFIIVDGGLTIVDGRIQRVDLHYTGK 156
           GDGK  T DDP V+ GCLDG           NL RF I DGGLTIVDGRIQ  DLHY GK
Sbjct: 324 GDGKVTTSDDPPVEFGCLDGDFIKKSGLSSSNLLRFTIGDGGLTIVDGRIQGADLHYIGK 383

BLAST of Carg10283 vs. ExPASy TrEMBL
Match: A0A6J1E4W0 (uncharacterized protein LOC111429956 OS=Cucurbita moschata OX=3662 GN=LOC111429956 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.7e-42
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = 0

Query: 4   QLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYF 63
           +LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQE YLLSRMIYYF
Sbjct: 37  ELSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEPYLLSRMIYYF 96

Query: 64  TSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGAT 109
           T IPITSQV HLHWSGRMRIAVDMLLTQIKWTSSKPTA  G GAT
Sbjct: 97  TCIPITSQVHHLHWSGRMRIAVDMLLTQIKWTSSKPTAA-GFGAT 140

BLAST of Carg10283 vs. ExPASy TrEMBL
Match: A0A6J1C4W1 (Snurportin-1 OS=Momordica charantia OX=3673 GN=LOC111007415 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 42/65 (64.62%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 102 GDGKGATLDDPSVDIGCLDG-----------NLFRFIIVDGGLTIVDGRIQRVDLHYTGK 156
           GDGK  T DDP V+ GCLDG           NL RF I DGGLTIVDGRIQ  DLHY GK
Sbjct: 324 GDGKVTTSDDPPVEFGCLDGDFIKKSGLSSSNLLRFTIGDGGLTIVDGRIQGADLHYIGK 383

BLAST of Carg10283 vs. ExPASy TrEMBL
Match: A0A0A0LNL4 (Snurportin-1 OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-10
Identity = 41/64 (64.06%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 103 DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKV 156
           DGK AT DDP V  GCLD           GNL RF I DGGLTIVDGRIQ  DL Y+GKV
Sbjct: 361 DGKVATSDDPPVYFGCLDGDFLGKLGLSSGNLLRFTIGDGGLTIVDGRIQGADLQYSGKV 420

BLAST of Carg10283 vs. ExPASy TrEMBL
Match: A0A6J1KQC3 (Snurportin-1 OS=Cucurbita maxima OX=3661 GN=LOC111495530 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-10
Identity = 40/64 (62.50%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 103 DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKV 156
           DGK  T DDP VD GCLD           GNL RF I DGGLTIVDGRIQ  DL Y GKV
Sbjct: 325 DGKVTTSDDPPVDFGCLDGNFIEKSGLSSGNLLRFAIGDGGLTIVDGRIQGADLQYVGKV 384

BLAST of Carg10283 vs. ExPASy TrEMBL
Match: A0A5A7URL4 (Snurportin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00570 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 40/64 (62.50%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 103 DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKV 156
           DGK AT DDP V  GCLD           GNL RF I DGGLTIVDG+IQ  DL Y GKV
Sbjct: 795 DGKVATSDDPPVYFGCLDGDFLGKLGLSSGNLLRFTIGDGGLTIVDGKIQGADLQYNGKV 854

BLAST of Carg10283 vs. TAIR 10
Match: AT4G24880.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-08
Identity = 30/64 (46.88%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 103 DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKV 156
           +GK  T DDP V   CL+           G+L RF I DGGL  VDGR ++ DL Y G  
Sbjct: 309 EGKLVTSDDPPVPFSCLNADFVKQSGLSSGSLIRFAIGDGGLKCVDGRFEKADLQYIGVS 368

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7023065.13.6e-79100.00hypothetical protein SDJN02_14089, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6589387.11.5e-5383.69hypothetical protein SDJN03_14810, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022921813.13.5e-4293.33uncharacterized protein LOC111429956 [Cucurbita moschata][more]
XP_038879771.11.4e-1166.15snurportin-1 [Benincasa hispida][more]
XP_022135463.11.9e-1164.62snurportin-1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E4W01.7e-4293.33uncharacterized protein LOC111429956 OS=Cucurbita moschata OX=3662 GN=LOC1114299... [more]
A0A6J1C4W19.0e-1264.62Snurportin-1 OS=Momordica charantia OX=3673 GN=LOC111007415 PE=3 SV=1[more]
A0A0A0LNL42.9e-1064.06Snurportin-1 OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=3 SV=1[more]
A0A6J1KQC36.5e-1062.50Snurportin-1 OS=Cucurbita maxima OX=3661 GN=LOC111495530 PE=3 SV=1[more]
A0A5A7URL48.4e-1062.50Snurportin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00570 P... [more]
Match NameE-valueIdentityDescription
AT4G24880.16.0e-0846.88unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10283-RACarg10283-RAmRNA