Carg09963 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09963
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr10: 2320773 .. 2321510 (+)
RNA-Seq Expression	Carg09963
Synteny	Carg09963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGTATGGATGAAGACGACAGAAATTCGAAGAACACGAAATTGAATTCAGACCTCTCTGATTCCAAATTCAATCGAAAACCAATAATTCGATTGATGGGAATGGGGAGTTCGTGGTATAGCAATAATTCCTTTCGTTTTTTGAAACTTTATTATAATATTATCCATACCTTTTGTACTTCTAAAAGGCTGGCTTCGAAGGTTTCTTCCCATTAAAAATGGAGTTCAGAGGTGTCATGTCGCCATAGCTCTCGACATCGAGCTTTTGGAAGAAACCTTCTTTGCTATGGCTGCGGCCGTGAAGAAATTAAGATTATTTTATTTTTTATTTACAAATTTTATAAATTTTTTATTTTGTATTTGAAATTCGACATAAAAATTAAAATGTGTGTTTTGAGAAAAATAATAAAGCTACCAAAATAAATAAATAAATATGTTTTAAATCCGAAGCAATCGTTCCGGTCAAAGACTTACAACCCGTAATGTCTTAGTTCATTCGTTCCTCTTTCCCGGAACGTTCAGTGTCTGATTTAGGGTTCTATTCTTTTCTTCTTGGATCTTGAATCCAGCCAATTTTCTGAATCAGACACTGTAATCTCTGTACTTCTTTGTGTTCTTCGCAGCTGGGAGAGAGGGAAGGTTCAATTATTTGTTGAGTTTCTTGGCATTTTCTTTTTCTTCTCTTTTGTACAGATTGCTTACGTTTTGCAGCAATCGTACAACGATCTTGATTGA

mRNA sequence

ATGATCCGTATGGATGAAGACGACAGAAATTCGAAGAACACGAAATTGAATTCAGACCTCTCTGATTCCAAATTCAATCGAAAACCAATAATTCGATTGATGGGAATGGGGAGCTGGCTTCGAAGGTTTCTTCCCATTAAAAATGGAGTTCAGAGGTGTCATGTCGCCATAGCTCTCGACATCGAGCTTTTGGAAGAAACCTTCTTTGCTATGGCTGCGGCCGGTTCTATTCTTTTCTTCTTGGATCTTGAATCCAGCCAATTTTCTGAATCAGACACTGTAATCTCTATTGCTTACGTTTTGCAGCAATCGTACAACGATCTTGATTGA

Coding sequence (CDS)

ATGATCCGTATGGATGAAGACGACAGAAATTCGAAGAACACGAAATTGAATTCAGACCTCTCTGATTCCAAATTCAATCGAAAACCAATAATTCGATTGATGGGAATGGGGAGCTGGCTTCGAAGGTTTCTTCCCATTAAAAATGGAGTTCAGAGGTGTCATGTCGCCATAGCTCTCGACATCGAGCTTTTGGAAGAAACCTTCTTTGCTATGGCTGCGGCCGGTTCTATTCTTTTCTTCTTGGATCTTGAATCCAGCCAATTTTCTGAATCAGACACTGTAATCTCTATTGCTTACGTTTTGCAGCAATCGTACAACGATCTTGATTGA

Protein sequence

MIRMDEDDRNSKNTKLNSDLSDSKFNRKPIIRLMGMGSWLRRFLPIKNGVQRCHVAIALDIELLEETFFAMAAAGSILFFLDLESSQFSESDTVISIAYVLQQSYNDLD

Homology

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BLAST of Carg09963 vs. NCBI nr
Match: KAG7023474.1 (hypothetical protein SDJN02_14499, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MIRMDEDDRNSKNTKLNSDLSDSKFNRKPIIRLMGMGSWLRRFLPIKNGVQRCHVAIALD 60
           MIRMDEDDRNSKNTKLNSDLSDSKFNRKPIIRLMGMGSWLRRFLPIKNGVQRCHVAIALD
Sbjct: 1   MIRMDEDDRNSKNTKLNSDLSDSKFNRKPIIRLMGMGSWLRRFLPIKNGVQRCHVAIALD 60

Query: 61  IELLEETFFAMAAAGSILFFLDLESSQFSESDTVISIAYVLQQSYNDLD 110
           IELLEETFFAMAAAGSILFFLDLESSQFSESDTVISIAYVLQQSYNDLD
Sbjct: 61  IELLEETFFAMAAAGSILFFLDLESSQFSESDTVISIAYVLQQSYNDLD 109

The following BLAST results are available for this feature:

BLAST of Carg09963 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023474.1	1.9e-50	100.00	hypothetical protein SDJN02_14499, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg09963 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09963 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09963 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09963-RA	Carg09963-RA	mRNA