Carg09569 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAGCCAACAGGATTTGAGCTTCAAGGCTGGGGAGACTGTTGGGCAAGCTCAGGTCAAGAAGGATGAGGTTACGAGCCAAGCAACATCCACCCAGGATGCCCAATCCGCCGCCCAAACTGCCACCGACCTGAAGGACCAAGCTGCCAGCTTCCTCCAACAGGCAATTACTTGTCATTTTCACTACTTTCACTGACAAGAATGGCTGTGTGTTTTTTTTTTTTTAATTTGTTGTGTGTTTGTGTAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACAACAACCCTACCAACAATCCTTCCCCTACAATTTAA ATGGCAAGCCAACAGGATTTGAGCTTCAAGGCTGGGGAGACTGTTGGGCAAGCTCAGGTCAAGAAGGATGAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACAACAACCCTACCAACAATCCTTCCCCTACAATTTAA ATGGCAAGCCAACAGGATTTGAGCTTCAAGGCTGGGGAGACTGTTGGGCAAGCTCAGGTCAAGAAGGATGAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACAACAACCCTACCAACAATCCTTCCCCTACAATTTAA MASQQDLSFKAGETVGQAQVKKDETGEQVKSMAQGAAEAVKNTLGMKTDTDTTTSPNNNPTNNPSPTI Homology
BLAST of Carg09569 vs. NCBI nr
Match: KAG7014122.1 (hypothetical protein SDJN02_24295, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Carg09569 vs. NCBI nr
Match: KAG6575581.1 (hypothetical protein SDJN03_26220, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20 Identity = 68/99 (68.69%), Postives = 68/99 (68.69%), Query Frame = 0
BLAST of Carg09569 vs. NCBI nr
Match: XP_022954121.1 (late embryogenesis abundant protein 1-like [Cucurbita moschata]) HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20 Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0
BLAST of Carg09569 vs. NCBI nr
Match: XP_022991676.1 (late embryogenesis abundant protein 1-like [Cucurbita maxima]) HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18 Identity = 63/99 (63.64%), Postives = 66/99 (66.67%), Query Frame = 0
BLAST of Carg09569 vs. NCBI nr
Match: KAG7025770.1 (hypothetical protein SDJN02_12268, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 93.2 bits (230), Expect = 9.3e-16 Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0
BLAST of Carg09569 vs. ExPASy TrEMBL
Match: A0A6J1GQ03 (late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456481 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20 Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0
BLAST of Carg09569 vs. ExPASy TrEMBL
Match: A0A6J1JRF1 (late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488219 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 7.4e-19 Identity = 63/99 (63.64%), Postives = 66/99 (66.67%), Query Frame = 0
BLAST of Carg09569 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10 Identity = 57/109 (52.29%), Postives = 61/109 (55.96%), Query Frame = 0
BLAST of Carg09569 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.7e-10 Identity = 55/96 (57.29%), Postives = 60/96 (62.50%), Query Frame = 0
BLAST of Carg09569 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 6.3e-10 Identity = 53/111 (47.75%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of Carg09569 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related ) HSP 1 Score: 42.7 bits (99), Expect = 1.3e-04 Identity = 37/107 (34.58%), Postives = 46/107 (42.99%), Query Frame = 0
BLAST of Carg09569 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. ) HSP 1 Score: 41.2 bits (95), Expect = 3.9e-04 Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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