Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATGAGATTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTGGTCGAGATCGACCCTGA
mRNA sequence
ATGAGCATGAGATTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTGGTCGAGATCGACCCTGA
Coding sequence (CDS)
ATGAGCATGAGATTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTGGTCGAGATCGACCCTGA
Protein sequence
MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
Homology
BLAST of Carg09387 vs. NCBI nr
Match:
KAG7029455.1 (hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 159
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 158
BLAST of Carg09387 vs. NCBI nr
Match:
XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 305.1 bits (780), Expect = 3.6e-79
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNKIGY PRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 159
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS-GRDRP 157
BLAST of Carg09387 vs. NCBI nr
Match:
XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 304.3 bits (778), Expect = 6.1e-79
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 159
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS-GRDRP 157
BLAST of Carg09387 vs. NCBI nr
Match:
XP_022997345.1 (uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997346.1 uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997347.1 uncharacterized protein LOC111492289 [Cucurbita maxima])
HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK GYHPRALHNGPDTIDELLD HVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 159
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG DRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG-DRP 157
BLAST of Carg09387 vs. NCBI nr
Match:
XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])
HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 135/151 (89.40%), Postives = 144/151 (95.36%), Query Frame = 0
Query: 3 MRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELIT 62
MRLV KC+ LS HKNFL CNKIG+HPR LHNGPDT+ ELLDRHVVKKEKSFDD+E+ELIT
Sbjct: 1 MRLVGKCLNLSIHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELIT 60
Query: 63 QRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVT 122
QRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDAR+E+DPEIVT
Sbjct: 61 QRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIVT 120
Query: 123 RLLIGGRDAVQSALDKLAEKQRQEIDKKQSG 154
RLLIGGRDAVQSALDKLAEKQ QEIDKKQ+G
Sbjct: 121 RLLIGGRDAVQSALDKLAEKQMQEIDKKQNG 151
BLAST of Carg09387 vs. ExPASy TrEMBL
Match:
A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)
HSP 1 Score: 304.3 bits (778), Expect = 3.0e-79
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 159
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS-GRDRP 157
BLAST of Carg09387 vs. ExPASy TrEMBL
Match:
A0A6J1K786 (uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289 PE=4 SV=1)
HSP 1 Score: 303.1 bits (775), Expect = 6.6e-79
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK GYHPRALHNGPDTIDELLD HVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 159
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG DRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG-DRP 157
BLAST of Carg09387 vs. ExPASy TrEMBL
Match:
A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)
HSP 1 Score: 273.1 bits (697), Expect = 7.4e-70
Identity = 132/154 (85.71%), Postives = 147/154 (95.45%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
M++RLV KC+ LS HK+FLACNKIG+HPR LHNGPDTIDELLDRHVVKKEKSF+D+++EL
Sbjct: 9 MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPE+
Sbjct: 69 ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG 155
VTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ GG
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGG 162
BLAST of Carg09387 vs. ExPASy TrEMBL
Match:
A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)
HSP 1 Score: 263.5 bits (672), Expect = 5.8e-67
Identity = 133/154 (86.36%), Postives = 145/154 (94.16%), Query Frame = 0
Query: 1 MSMRLVEKCVKLST-HKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
M+MRLV K + LS+ KNFL C+KIG+HPR LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG 154
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSG
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSG 154
BLAST of Carg09387 vs. ExPASy TrEMBL
Match:
A0A1S4DWJ1 (uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=4 SV=1)
HSP 1 Score: 263.5 bits (672), Expect = 5.8e-67
Identity = 133/154 (86.36%), Postives = 145/154 (94.16%), Query Frame = 0
Query: 1 MSMRLVEKCVKLST-HKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
M+MRLV K + LS+ KNFL C+KIG+HPR LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG 154
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSG
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSG 154
BLAST of Carg09387 vs. TAIR 10
Match:
AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )
HSP 1 Score: 187.2 bits (474), Expect = 1.0e-47
Identity = 95/126 (75.40%), Postives = 108/126 (85.71%), Query Frame = 0
Query: 29 RALHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFF 88
R LH GPDT++ELL+RH+ KKEK D DE E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29 RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88
Query: 89 MWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEI 148
W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89 TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148
Query: 149 DKKQSG 154
+K++ G
Sbjct: 149 EKQRRG 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7029455.1 | 3.5e-82 | 100.00 | hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023545212.1 | 3.6e-79 | 98.73 | uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo] | [more] |
XP_022961619.1 | 6.1e-79 | 97.47 | uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar... | [more] |
XP_022997345.1 | 1.4e-78 | 97.47 | uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997346.1 uncharac... | [more] |
XP_038884246.1 | 3.1e-70 | 89.40 | uncharacterized protein LOC120075144 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HEL0 | 3.0e-79 | 97.47 | uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623... | [more] |
A0A6J1K786 | 6.6e-79 | 97.47 | uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289... | [more] |
A0A6J1CRY1 | 7.4e-70 | 85.71 | uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A5A7VCD6 | 5.8e-67 | 86.36 | Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... | [more] |
A0A1S4DWJ1 | 5.8e-67 | 86.36 | uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT1G76060.1 | 1.0e-47 | 75.40 | LYR family of Fe/S cluster biogenesis protein | [more] |