Carg09245 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09245
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
LocationCarg_Chr05: 2348747 .. 2349289 (+)
RNA-Seq ExpressionCarg09245
SyntenyCarg09245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Protein sequence

MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Homology
BLAST of Carg09245 vs. NCBI nr
Match: KAG7029595.1 (putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0

Query: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60
           MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR
Sbjct: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60

Query: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120
           PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS
Sbjct: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120

Query: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180
           DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180

BLAST of Carg09245 vs. NCBI nr
Match: XP_022961745.1 (putative RING-H2 finger protein ATL69 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0

Query: 1   MSSADSP-SSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 60
           MSSADSP SSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST
Sbjct: 1   MSSADSPSSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 60

Query: 61  RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120
           RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL
Sbjct: 61  RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120

Query: 121 SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 180
           SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA
Sbjct: 121 SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 180

BLAST of Carg09245 vs. NCBI nr
Match: KAG6598654.1 (putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335.5 bits (859), Expect = 2.8e-88
Identity = 177/180 (98.33%), Postives = 177/180 (98.33%), Query Frame = 0

Query: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60
           MSSAD PSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 
Sbjct: 1   MSSADPPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST- 60

Query: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120
            RPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS
Sbjct: 61  -RPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120

Query: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180
           DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

BLAST of Carg09245 vs. NCBI nr
Match: XP_022997272.1 (putative RING-H2 finger protein ATL69 [Cucurbita maxima])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0

Query: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60
           MSSAD PSSSSSSSS++AAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 
Sbjct: 1   MSSADPPSSSSSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST- 60

Query: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120
            RPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS
Sbjct: 61  -RPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120

Query: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180
           DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

BLAST of Carg09245 vs. NCBI nr
Match: XP_023546361.1 (putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 8.5e-85
Identity = 173/180 (96.11%), Postives = 173/180 (96.11%), Query Frame = 0

Query: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60
           MSSAD P  SSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 
Sbjct: 1   MSSADPP--SSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST- 60

Query: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120
              RPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS
Sbjct: 61  ---RPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120

Query: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180
           DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 174

BLAST of Carg09245 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.5e-49
Identity = 103/160 (64.38%), Postives = 120/160 (75.00%), Query Frame = 0

Query: 21  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADN 80
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST  R          LP PAA+ 
Sbjct: 5   SPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKST-GRDEATSDVVLDLPSPAAE- 64

Query: 81  VVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHS 140
              + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+
Sbjct: 65  ---VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHT 124

Query: 141 ACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
            CVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 DCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

BLAST of Carg09245 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.6e-28
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIR-----AKSTRPRPRPRPRPSAPLPPPA----- 87
           GL YGI +++ IL+ I+TI L SY C R     + +T PR R R R S    PP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 88  -----ADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPYDS 147
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 148 VRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 177
           +R +PDC H FH  CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

BLAST of Carg09245 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.9e-25
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 0

Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVG 87
           G  YGI +++ +L+ I+TI L SY C R       P    + S  +       ++ ++ G
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPSQTNQDSTRIHHHHHHVIIDVVPG 122

Query: 88  LDGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSAC 147
           LD   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  C
Sbjct: 123 LDEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKC 182

Query: 148 VDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 179
           +D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 IDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

BLAST of Carg09245 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 139
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 140 HSACVDEWLRMSATCPLCRNSPAP 163
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

BLAST of Carg09245 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-22
Identity = 70/181 (38.67%), Postives = 94/181 (51.93%), Query Frame = 0

Query: 27  VGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR---------------PRPRPRPRPSA 86
           +GLGY IAIA+  LV ISTI+L SY C RA   R                R    PR   
Sbjct: 24  LGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIF 83

Query: 87  PLPPPAADNVVVLMVGLDGSIIESYPK---------LVLGESRRLPAPNHGPCSICLSDY 146
                  ++  V++ GLD S+I SYPK         +V G+           CSICL +Y
Sbjct: 84  VAEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEY 143

Query: 147 QPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAP----TPVATPLSEFAPLASN 180
              + +R +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP +TPLSE  PL+  
Sbjct: 144 MEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLSQY 203

BLAST of Carg09245 vs. ExPASy TrEMBL
Match: A0A6J1HD62 (putative RING-H2 finger protein ATL69 OS=Cucurbita moschata OX=3662 GN=LOC111462423 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0

Query: 1   MSSADSP-SSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 60
           MSSADSP SSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST
Sbjct: 1   MSSADSPSSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 60

Query: 61  RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120
           RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL
Sbjct: 61  RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120

Query: 121 SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 180
           SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA
Sbjct: 121 SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 180

BLAST of Carg09245 vs. ExPASy TrEMBL
Match: A0A6J1K4J2 (putative RING-H2 finger protein ATL69 OS=Cucurbita maxima OX=3661 GN=LOC111492227 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.8e-88
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0

Query: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60
           MSSAD PSSSSSSSS++AAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 
Sbjct: 1   MSSADPPSSSSSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST- 60

Query: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120
            RPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS
Sbjct: 61  -RPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120

Query: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180
           DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

BLAST of Carg09245 vs. ExPASy TrEMBL
Match: A0A1S3BCM0 (putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.8e-68
Identity = 143/169 (84.62%), Postives = 150/169 (88.76%), Query Frame = 0

Query: 14  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAK-STRPRPRPRPRPSAP 73
           SSA   +SPA  GVGLGYGIAIAVSILVFIST+ML+SYACIR K STRPRPRP    S P
Sbjct: 2   SSAHPPSSPA-TGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSAN-SLP 61

Query: 74  LPPPA-ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCI 133
            PP A  DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCI
Sbjct: 62  SPPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCI 121

Query: 134 PDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           PDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 122 PDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

BLAST of Carg09245 vs. ExPASy TrEMBL
Match: A0A5A7V8V8 (Putative RING-H2 finger protein ATL69 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00990 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 142/169 (84.02%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 14  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAK-STRPRPRPRPRPSAP 73
           SSA   +SPA  GVGLGYGIAIAVSILVFIST+ML+SYACIR K STRPRPRP    S P
Sbjct: 2   SSAHPPSSPA-TGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPNAN-SLP 61

Query: 74  LPPPA-ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCI 133
            PP A  DNVVVLMVGLDGSI ESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCI
Sbjct: 62  SPPAATVDNVVVLMVGLDGSIFESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCI 121

Query: 134 PDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           PDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 122 PDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

BLAST of Carg09245 vs. ExPASy TrEMBL
Match: A0A0A0KFY2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.0e-64
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0

Query: 14  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPL 73
           SSA   +SPA  G+GLGYGIAIAVSILVFIST+ML+SYACIR KS       RP  S P 
Sbjct: 2   SSAHPPSSPA-TGLGLGYGIAIAVSILVFISTVMLISYACIRVKSA----TTRPSASLPS 61

Query: 74  PPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPD 133
           PP   DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPD
Sbjct: 62  PPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPD 121

Query: 134 CRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           CRHCFHS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 CRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

BLAST of Carg09245 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-50
Identity = 103/160 (64.38%), Postives = 120/160 (75.00%), Query Frame = 0

Query: 21  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADN 80
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST  R          LP PAA+ 
Sbjct: 5   SPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKST-GRDEATSDVVLDLPSPAAE- 64

Query: 81  VVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHS 140
              + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+
Sbjct: 65  ---VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHT 124

Query: 141 ACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
            CVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 DCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

BLAST of Carg09245 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-29
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIR-----AKSTRPRPRPRPRPSAPLPPPA----- 87
           GL YGI +++ IL+ I+TI L SY C R     + +T PR R R R S    PP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 88  -----ADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPYDS 147
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 148 VRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 177
           +R +PDC H FH  CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

BLAST of Carg09245 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-26
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 0

Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVG 87
           G  YGI +++ +L+ I+TI L SY C R       P    + S  +       ++ ++ G
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPSQTNQDSTRIHHHHHHVIIDVVPG 122

Query: 88  LDGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSAC 147
           LD   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  C
Sbjct: 123 LDEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKC 182

Query: 148 VDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 179
           +D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 IDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

BLAST of Carg09245 vs. TAIR 10
Match: AT2G46495.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-26
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 139
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 140 HSACVDEWLRMSATCPLCRNSPAP 163
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

BLAST of Carg09245 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-26
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0

Query: 20  ASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAAD 79
           A P  A   +  G  I  +++VF     L  +   +  S   R R  P P          
Sbjct: 239 AIPRRARYAIAVGAGIPGALIVF----GLFCFVYSKISSCIKRRRLVPTPEINNAQAHYL 298

Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFH 139
           +  V+++GLDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P +++R IP C+HCFH
Sbjct: 299 HSSVIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFH 358

Query: 140 SACVDEWLRMSATCPLCRNSP 161
           + C+DEWL+++ TCP+CRNSP
Sbjct: 359 ADCIDEWLKLNGTCPVCRNSP 375

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029595.11.2e-91100.00putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. ar... [more]
XP_022961745.13.0e-9099.45putative RING-H2 finger protein ATL69 [Cucurbita moschata][more]
KAG6598654.12.8e-8898.33putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. so... [more]
XP_022997272.11.4e-8797.22putative RING-H2 finger protein ATL69 [Cucurbita maxima][more]
XP_023546361.18.5e-8596.11putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9FL423.5e-4964.38Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P... [more]
Q9FG217.6e-2840.83Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P... [more]
Q8RX297.9e-2539.74RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1[more]
P0CH011.0e-2460.71Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A... [more]
Q9M3134.8e-2238.67RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HD621.5e-9099.45putative RING-H2 finger protein ATL69 OS=Cucurbita moschata OX=3662 GN=LOC111462... [more]
A0A6J1K4J26.8e-8897.22putative RING-H2 finger protein ATL69 OS=Cucurbita maxima OX=3661 GN=LOC11149222... [more]
A0A1S3BCM07.8e-6884.62putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE... [more]
A0A5A7V8V81.7e-6784.02Putative RING-H2 finger protein ATL69 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0KFY29.0e-6479.04RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 P... [more]
Match NameE-valueIdentityDescription
AT5G07040.12.5e-5064.38RING/U-box superfamily protein [more]
AT5G06490.15.4e-2940.83RING/U-box superfamily protein [more]
AT2G35910.15.6e-2639.74RING/U-box superfamily protein [more]
AT2G46495.17.3e-2660.71RING/U-box superfamily protein [more]
AT5G53110.17.3e-2642.55RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 115..156
e-value: 3.9E-5
score: 33.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 115..157
e-value: 4.1E-12
score: 46.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 115..157
score: 12.267982
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 82..162
e-value: 6.0E-19
score: 69.5
NoneNo IPR availablePANTHERPTHR46279:SF19RING-H2 FINGER PROTEIN ATL69-RELATEDcoord: 29..162
NoneNo IPR availablePANTHERPTHR46279RING/U-BOX SUPERFAMILY PROTEINcoord: 29..162
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 114..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09245-RACarg09245-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane