Carg08885 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCAGGCTTCATCAATGGGCGAAGTTACTTACAGAAGGTGACTATGAAAAAGTGTTCCAGCAGACGTTTGGTTTTACTGATGGAGACAAATACTTGGGCCTTTGCTTGTGTCTGAACACTTCCTCTGGGCCTGTAAATGGGACTCTATACATATCCACAAAAATGGTGGCCATCTATAGTAAGTTTCCTCTTCGTCACTCTTCGTCTCCTGGCCAGCCACAGTGGATCCATGACAGGGTATGTCTGACCCTATTATTCTTGAAAATATTTTTCTCTGATGAATCTGAAACAGAATTGGATATGGAATTTAGGCCATATTTGGTAACGTAAAACAAAATGGTGTAAGAGTACTAATAGGAGTTATGTTAGGAATGTTAGTAGAATAGTAGCAAGGGCATAGCAATAATTAATTAGGGGTGTCTTGGCTGTAAATAGAGGGAGTTAGGGACCGTAGAAGAGGGATCATTCCGGGACTTAGGAGGGAGATTACCCTCTTAA ATGGTCAGGCTTCATCAATGGGCGAAGTTACTTACAGAAGGTGACTATGAAAAAGTGTTCCAGCAGACGTTTGGTTTTACTGATGGAGACAAATACTTGGGCCTTTGCTTGTGTCTGAACACTTCCTCTGGGCCTGTAAATGGGACTCTATACATATCCACAAAAATGGTGGCCATCTATAGTAAGTTTCCTCTTCGTCACTCTTCGTCTCCTGGCCAGCCACAGTGGATCCATGACAGGAGGGAGTTAGGGACCGTAGAAGAGGGATCATTCCGGGACTTAGGAGGGAGATTACCCTCTTAA ATGGTCAGGCTTCATCAATGGGCGAAGTTACTTACAGAAGGTGACTATGAAAAAGTGTTCCAGCAGACGTTTGGTTTTACTGATGGAGACAAATACTTGGGCCTTTGCTTGTGTCTGAACACTTCCTCTGGGCCTGTAAATGGGACTCTATACATATCCACAAAAATGGTGGCCATCTATAGTAAGTTTCCTCTTCGTCACTCTTCGTCTCCTGGCCAGCCACAGTGGATCCATGACAGGAGGGAGTTAGGGACCGTAGAAGAGGGATCATTCCGGGACTTAGGAGGGAGATTACCCTCTTAA MVRLHQWAKLLTEGDYEKVFQQTFGFTDGDKYLGLCLCLNTSSGPVNGTLYISTKMVAIYSKFPLRHSSSPGQPQWIHDRRELGTVEEGSFRDLGGRLPS Homology
BLAST of Carg08885 vs. NCBI nr
Match: KAG7036238.1 (GEM-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 214.9 bits (546), Expect = 3.1e-52 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Carg08885 vs. NCBI nr
Match: XP_023532950.1 (GLABRA2 expression modulator-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37 Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0
BLAST of Carg08885 vs. NCBI nr
Match: XP_008460396.1 (PREDICTED: GEM-like protein 2 isoform X1 [Cucumis melo] >XP_008460397.1 PREDICTED: GEM-like protein 2 isoform X1 [Cucumis melo]) HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22 Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of Carg08885 vs. NCBI nr
Match: XP_008460399.1 (PREDICTED: GEM-like protein 2 isoform X3 [Cucumis melo]) HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22 Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of Carg08885 vs. NCBI nr
Match: XP_008460398.1 (PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo]) HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22 Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy Swiss-Prot
Match: Q9M122 (GEM-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g01600 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy Swiss-Prot
Match: Q9SE96 (GEM-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=FIP1 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 6.4e-08 Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy Swiss-Prot
Match: Q8S8F8 (GLABRA2 expression modulator OS=Arabidopsis thaliana OX=3702 GN=GEM PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.4e-07 Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy Swiss-Prot
Match: Q9LYV6 (GEM-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=At5g13200 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07 Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy Swiss-Prot
Match: Q9M063 (Putative GEM-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At4g40100 PE=3 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06 Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy TrEMBL
Match: A0A1S3CCH4 (GEM-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23 Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy TrEMBL
Match: A0A1S3CCV4 (GEM-like protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23 Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy TrEMBL
Match: A0A1S3CCD7 (GEM-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23 Identity = 58/78 (74.36%), Postives = 61/78 (78.21%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy TrEMBL
Match: A0A6J1E018 (GEM-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111026148 PE=3 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 9.5e-23 Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 0
BLAST of Carg08885 vs. ExPASy TrEMBL
Match: A0A6J1DUB7 (GEM-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111023171 PE=3 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 4.6e-17 Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0
BLAST of Carg08885 vs. TAIR 10
Match: AT4G01600.1 (GRAM domain family protein ) HSP 1 Score: 60.5 bits (145), Expect = 9.1e-10 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
BLAST of Carg08885 vs. TAIR 10
Match: AT4G01600.2 (GRAM domain family protein ) HSP 1 Score: 60.5 bits (145), Expect = 9.1e-10 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
BLAST of Carg08885 vs. TAIR 10
Match: AT1G28200.1 (FH interacting protein 1 ) HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09 Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of Carg08885 vs. TAIR 10
Match: AT2G22475.2 (GRAM domain family protein ) HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08 Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0
BLAST of Carg08885 vs. TAIR 10
Match: AT2G22475.1 (GRAM domain family protein ) HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08 Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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