Carg08633 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08633
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein Sm D3
Location	Carg_Chr09: 254424 .. 256852 (-)
RNA-Seq Expression	Carg08633
Synteny	Carg08633

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTGCCTCTCTCTTTTTGCTTTTCGTTGTTCGTCTTAAGATTATGCAACTTTTGTTTGATAGTTGGACCTTTATGTTTGTGGTTTTCGCCTTAGTTCATTTAGTTCATTCTGCTTCTTTATCTCTAAAGCCGTGTACTTCAATATCTGGTTCAAGTACTTTTTGAACTTTGAATAAACCCTAATTTGGTTTAGTTTCCAACAATTTATAGCTTGAACTGCCACGATCTTTTTTTTTTTTTTTTTTTATGACTAATTTTAATACAAAATCTGCTTAGGAAGAACCAGAAAATTTCCGGGAACAGAAAACTCTCTATATGGTAAATTTCAACATATAAGGAACAAAAATTGCATCTAGACTCCAGGCCTGACTGGTATGTCCCAAACCCAAAAGGCAACAACTGTAAAATGAGACTGAAAATCGGCAAAGCATCAAAACATGAAAAGAGTGCTAATTGCGATCTTGATTGCATGATCTGGATTGATTAAATTAACTAGGGACGAATGTTAATTGTGCACGTCGATTCATCTGCTGAGTGCGCTGTTTAATTGCAACTTTCTTGCTATGCACCTCGTAATCACCAAATTGAATAGGAGAGATCGATATTATCATAGATTCATATTGGTTAATTGGATAGTAAACGATTTCTATAAAATTGTCAAATGGATTAAGGTTTACTGATTTTCTTTGTTTAATCTGTTGGTGTTTTACTTATGTTATGGTTAATTGCTCAATGTCTCCGAGTTTTTCCCCTTTGCTTGCATGTATATAGTTGGGAGTCATGTTCTTCAGGTTCACTTTATGTGTTTTCTTCCATAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTGTATTATAGACTATCCAATGACTTTCTTAGTTATTCGAAGGGATTTTGTCAGGATTTGGTTGGCATGCTGACATCTGTTTATGCATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGTATTTCAACTTAAATCCTTTGAAATCTAGTCCTGATGAAATCCTTGCGTGCTTTTTCTTTTTCCTAACTCATGCTTTTTCAATCCTGAAGGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCCATGCAGCTTAATTTTAGTACGGTGAAAATTTATTTCCTCTACACATTTTGAATAAGTACGAAGATCAACTTACATGCCCCTTGTGCATTTTTTCATGTATGAGAGAAGGATTTGATCGCTGCTTGTGTGCATATCTGCCAAGAAATATAGAATCTACTTTAGTTGAAATTACTAGGATATGATCGCTATTTAATCATATCAATTTGGAAGATGTTAGGGAATGTTTCATGGCACTACGAACTTCACATTTCTCTCTCTGAGGCATCCAGAATTTAGGCACATTCACACAAAACGCAGGAACCCACAGATAGTGTTAGGGGAAGTGATTATTACTTGTGAAATCTCTTGTTAGTTTATATGTTTAAAAACAGGTTGGTGATAGATTTAGAGGGAAAACAACTAGAATGCGTTACAAAATGTTCGTACACTTTTTAAGTTTCCAAAAGTTAACACTAGACATACTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTCGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAGACCCTTATAGAGGGAGGGGCATTTGGTTTTTTCTTTTCTTTTCTTTTTTC

mRNA sequence

AACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTCGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAGACCCTTATAGAGGGAGGGGCATTTGGTTTTTTCTTTTCTTTTCTTTTTTC

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRGAVPSARR

Homology

[Close]

BLAST of Carg08633 vs. NCBI nr
Match: KAG6591223.1 (Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. NCBI nr
Match: XP_022937091.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima] >XP_023534840.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534841.1 small nuclear ribonucleoprotein SmD3b-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG6608630.1 Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024110.1 Small nuclear ribonucleoprotein SmD3b [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037947.1 Small nuclear ribonucleoprotein SmD3b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. NCBI nr
Match: XP_022940723.1 (small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_022981932.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima])

HSP 1 Score: 255.0 bits (650), Expect = 3.6e-64
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. NCBI nr
Match: XP_023522400.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 4.7e-64
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRG VPSARR
Sbjct: 121 ATGRGVVPSARR 132

[Close]

BLAST of Carg08633 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 133
           ATGRGA+PSARR
Sbjct: 121 ATGRGAMPSARR 132

[Close]

BLAST of Carg08633 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-54
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K  A    G
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 TGGRGAVPPVRR 131

[Close]

BLAST of Carg08633 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-53
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    G GG
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 --GRGAVPPVRR 128

[Close]

BLAST of Carg08633 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of Carg08633 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of Carg08633 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of Carg08633 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.8e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. ExPASy TrEMBL
Match: A0A6J1F9D0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111443497 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.8e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. ExPASy TrEMBL
Match: A0A6J1IVB4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111480932 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. ExPASy TrEMBL
Match: A0A6J1FQ35 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111446231 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 133
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]

BLAST of Carg08633 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.6e-64
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 133
           ATGRGA+PSARR
Sbjct: 121 ATGRGAMPSARR 132

[Close]

BLAST of Carg08633 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-55
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K  A    G
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 TGGRGAVPPVRR 131

[Close]

BLAST of Carg08633 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-54
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    G GG
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 --GRGAVPPVRR 128

[Close]

BLAST of Carg08633 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-10
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRG 126
           RG+ ++++ +PD + +    ++   R   K   +G GRGR V       A GRG  T  G
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEK--TRTDRKPPGVGRGRGRGV---DDGGARGRGRGTSMG 121

Query: 127 AVPSAR 132
            +   R
Sbjct: 122 KMGGNR 122

[Close]

BLAST of Carg08633 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-08
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  T K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGKGASLG---VGRGRAVAMRAKAQAAGRGG 121
            +R+ ++PD L    +      RIK K  + G    GRGR    R + +  GRGG
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRG---RGRGRGRGRGG 115

[Close]

BLAST of Carg08633 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-07
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGGATGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

The following BLAST results are available for this feature:

BLAST of Carg08633 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591223.1	1.6e-64	100.00	Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022937091.1	1.6e-64	100.00	small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 ...	[more]
XP_022940723.1	3.6e-64	99.24	small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_0...	[more]
XP_023522400.1	4.7e-64	99.24	small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo]	[more]
XP_022151728.1	1.8e-63	98.48	small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1...	[more]

BLAST of Carg08633 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM92	2.7e-54	84.09	Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P...	[more]
Q9S7E6	2.9e-53	83.33	Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P...	[more]
P62318	6.8e-34	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=...	[more]
P62320	6.8e-34	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV...	[more]
P62323	6.8e-34	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S...	[more]

BLAST of Carg08633 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBE9	7.8e-65	100.00	Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11147362...	[more]
A0A6J1F9D0	7.8e-65	100.00	Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111443...	[more]
A0A6J1IVB4	1.7e-64	99.24	Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11148093...	[more]
A0A6J1FQ35	1.7e-64	99.24	Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111446...	[more]
A0A6J1DDX8	8.6e-64	98.48	Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of Carg08633 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20580.1	1.9e-55	84.09	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	2.1e-54	83.33	snRNP core protein SMD3	[more]
AT5G27720.1	7.1e-10	32.54	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	3.9e-08	30.43	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	1.5e-07	28.93	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..75 e-value: 5.2E-17 score: 72.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 11..74 e-value: 3.6E-15 score: 55.4
None	No IPR available	GENE3D	2.30.30.100		coord: 3..86 e-value: 1.6E-32 score: 112.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..132
None	No IPR available	PANTHER	PTHR23338:SF54	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3	coord: 1..128
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..128
IPR034099	Small nuclear ribonucleoprotein Sm D3	CDD	cd01721	Sm_D3	coord: 8..77 e-value: 5.56938E-47 score: 144.201
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08633-RA	Carg08633-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding