Carg08492 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08492
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 5393043 .. 5393970 (-)
RNA-Seq ExpressionCarg08492
SyntenyCarg08492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTACTGCTGTTTCCGTACTGGCTACTTGCCTCTGAACCAGTTGCCGGTGGACTGGATTGGTCACCTGGAGAAGAAGAATCAGCGGTGGTTTCACTTTCACTGGTTTGTCGAGTTGCCGGACTTGAAGAAGGTGCTGATTCTGATTCTGAGTTTGTGTATTCTGATTCTTGCTGGGCAGCCAGATGGGTCTCGTTATGCCACAAAGTTGGTCTCATTACAATACGACCACGTGAATTCTTGCTCCTCTTTTCTTGTATCCAAGTTCGATTCAGTTTCATAGCGCGCCTGGCAGTTGCCTTGGATCCTTCTGGACATCCTGATTTATCCATCAGAGTCGGTGGAAGCGCAAGTTCGTGCTGTTTCATGGCCTCGTTCTTGTCTTGAGTCAGAGGTATTCTGAATCCATGCACGAACTTGGAACAATGGTTTGCCACCATCGGCTTAACTTTTTGGTGGTTTAATGACTCATTCCCCTGATGAACAGACTGCCCATAGTAAGCTAATTTAGTTTCACTGACATTGCTTCTTGTATAACGTTGCAGGGATAAAATGTGGAGTTCAATTCTTCTGAGCGCTGAACTGATGCCACTTGATAAGTCATTAGCGGCAACATTTGACGCTGAAGCTCCGTCCCTTCGAGGTTTGTGTTCAATCTTCTCTGGATTTTCCATCCTTCTTGCAGTTTGATTATGTTCCATCCATTCAGCAACTTTCTCGTCCAGTGGCGTTGTCTGTTTATCATCTTTGCGTTGAAAGTTGTACAATGGCGGAGTCTGTACAAACTCAAATACGGATGTATGTCACTAGACATCTATGAATTGTTGTTTTGTTTTACAGAAGTTTTTATGCAGAATGGAATACAAACCTTCGAGTGGAACTCGAGAAGTCCAGTAGTGGCATCATCGAGCAAATGCTTCAATAA

mRNA sequence

ATGTTGCTACTGCTGTTTCCGTACTGGCTACTTGCCTCTGAACCAGTTGCCGGTGGACTGGATTGGTCACCTGGAGAAGAAGAATCAGCGGTGGTTTCACTTTCACTGGTTTGTCGAGTTGCCGGACTTGAAGAAGGTGCTGATTCTGATTCTGAGTTTGTGTATTCTGATTCTTGCTGGGCAGCCAGATGGGTCTCGTTATGCCACAAAGTTGGTCTCATTACAATACGACCACGTGAATTCTTGCTCCTCTTTTCTTGTATCCAAGTTCGATTCAGTTTCATAGCGCGCCTGGCAGTTGCCTTGGATCCTTCTGGACATCCTGATTTATCCATCAGAGTCGGTGGAAGCGCAAGTTCGTGCTGTTTCATGGCCTCGGATAAAATGTGGAGTTCAATTCTTCTGAGCGCTGAACTGATGCCACTTGATAAGTCATTAGCGGCAACATTTGACGCTGAAGCTCCGTCCCTTCGAGAATGGAATACAAACCTTCGAGTGGAACTCGAGAAGTCCAGTAGTGGCATCATCGAGCAAATGCTTCAATAA

Coding sequence (CDS)

ATGTTGCTACTGCTGTTTCCGTACTGGCTACTTGCCTCTGAACCAGTTGCCGGTGGACTGGATTGGTCACCTGGAGAAGAAGAATCAGCGGTGGTTTCACTTTCACTGGTTTGTCGAGTTGCCGGACTTGAAGAAGGTGCTGATTCTGATTCTGAGTTTGTGTATTCTGATTCTTGCTGGGCAGCCAGATGGGTCTCGTTATGCCACAAAGTTGGTCTCATTACAATACGACCACGTGAATTCTTGCTCCTCTTTTCTTGTATCCAAGTTCGATTCAGTTTCATAGCGCGCCTGGCAGTTGCCTTGGATCCTTCTGGACATCCTGATTTATCCATCAGAGTCGGTGGAAGCGCAAGTTCGTGCTGTTTCATGGCCTCGGATAAAATGTGGAGTTCAATTCTTCTGAGCGCTGAACTGATGCCACTTGATAAGTCATTAGCGGCAACATTTGACGCTGAAGCTCCGTCCCTTCGAGAATGGAATACAAACCTTCGAGTGGAACTCGAGAAGTCCAGTAGTGGCATCATCGAGCAAATGCTTCAATAA

Protein sequence

MLLLLFPYWLLASEPVAGGLDWSPGEEESAVVSLSLVCRVAGLEEGADSDSEFVYSDSCWAARWVSLCHKVGLITIRPREFLLLFSCIQVRFSFIARLAVALDPSGHPDLSIRVGGSASSCCFMASDKMWSSILLSAELMPLDKSLAATFDAEAPSLREWNTNLRVELEKSSSGIIEQMLQ
Homology
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BLAST of Carg08492 vs. NCBI nr
Match: KAG7035556.1 (hypothetical protein SDJN02_02353, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.5 bits (924), Expect = 8.3e-96
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MLLLLFPYWLLASEPVAGGLDWSPGEEESAVVSLSLVCRVAGLEEGADSDSEFVYSDSCW 60
           MLLLLFPYWLLASEPVAGGLDWSPGEEESAVVSLSLVCRVAGLEEGADSDSEFVYSDSCW
Sbjct: 1   MLLLLFPYWLLASEPVAGGLDWSPGEEESAVVSLSLVCRVAGLEEGADSDSEFVYSDSCW 60

Query: 61  AARWVSLCHKVGLITIRPREFLLLFSCIQVRFSFIARLAVALDPSGHPDLSIRVGGSASS 120
           AARWVSLCHKVGLITIRPREFLLLFSCIQVRFSFIARLAVALDPSGHPDLSIRVGGSASS
Sbjct: 61  AARWVSLCHKVGLITIRPREFLLLFSCIQVRFSFIARLAVALDPSGHPDLSIRVGGSASS 120

Query: 121 CCFMASDKMWSSILLSAELMPLDKSLAATFDAEAPSLREWNTNLRVELEKSSSGIIEQML 180
           CCFMASDKMWSSILLSAELMPLDKSLAATFDAEAPSLREWNTNLRVELEKSSSGIIEQML
Sbjct: 121 CCFMASDKMWSSILLSAELMPLDKSLAATFDAEAPSLREWNTNLRVELEKSSSGIIEQML 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

The following BLAST results are available for this feature:
BLAST of Carg08492 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035556.18.3e-96100.00hypothetical protein SDJN02_02353, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08492 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08492 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08492 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08492-RACarg08492-RAmRNA