Carg08341 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGTATCTTGGTTTATAACTAACTAATCCTTTTCTCCATGCTCTTTGTTGGTCGATGCTGAAAAATCGGTAATTATTTGCATATTGGCTCTAGTACATAGTTTCTAAATTGCTTGTCTAAATTAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGGTCTGTTTATATTTGAAGTTGTTCCACCTATTCTTGGTTTTTAACTGCTCATTTAAGTAGTCGATATAGCTCAATTAGTTTAGACATATACCTTTGACCGACCATCCATGTTGTTGGACTCACAGCTCATCTCATTATGCTTTTTCAGTGCCAATTTGTTGCATAGTTATGTTTCTGAAATTTCATGTGCATCAACTTACCTTTTTGGATGAAATATGTGGTTCTAAGTATAGGGACACACCAAAACGGTTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCGGTTCGAGTATGGACACTTGCTTCGGGCAACGAGGGCGAATCCATTCACGACTTGAGCTGTAGCGGCAATAAGTTCCACTCGTGCGTTTTTCATCCCATCCAATCTAGTTTACTGGTCATTGGATGTTACCAGGCAAGTCCAATCTTGTTGATTAAGCTTCAAAGGATGAATCAATTATTCCCCTCTAACCTCCATTTTTTTTGCTGCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAAAACAAAGAAAAAAAGACGAAAACCCGAAAACGAAGAAAAGGTAATCATCACATCACACTACTACTAGAACTAAAAGCTAAAGCAGTGAGTGATCTGGTACTGGCTTGTGTTTTTTTTAATCAGGACTTGTAATTTTTGTTTGTTTTTTGTTCCTGTTTTGGGTTTAGTAGAATATGAACTCTGACATAACTGTTCTTCTTGTAATTGGACACCCATCCACTGGTAGAATGTATACTATTTACTCTTCCCCTTGCTCTTCTGAAAAGCCTTTAGCCTCATTATTGATGTACTAGAGAGAGCAAGAACATGGCTTAAAGCTTACCAGAAAAAAAGGCAAAAGGGCAACAAGTTGTGTTT ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAAAACAAAGAAAAAAAGACGAAAACCCGAAAACGAAGAAAAGGTAATCATCACATCACACTACTACTAGAACTAAAAGCTAAAGCAGTGAGTGATCTGGTACTGGCTTGTGTTTTTTTTAATCAGGACTTGTAATTTTTGTTTGTTTTTTGTTCCTGTTTTGGGTTTAGTAGAATATGAACTCTGACATAACTGTTCTTCTTGTAATTGGACACCCATCCACTGGTAGAATGTATACTATTTACTCTTCCCCTTGCTCTTCTGAAAAGCCTTTAGCCTCATTATTGATGTACTAGAGAGAGCAAGAACATGGCTTAAAGCTTACCAGAAAAAAAGGCAAAAGGGCAACAAGTTGTGTTT ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAA MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWK Homology
BLAST of Carg08341 vs. NCBI nr
Match: KAG7029777.1 (Transcriptional corepressor LEUNIG, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of Carg08341 vs. NCBI nr
Match: XP_023546409.1 (transcriptional corepressor LEUNIG-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. NCBI nr
Match: XP_022997382.1 (transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. NCBI nr
Match: XP_022929684.1 (transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita moschata] >XP_022929685.1 transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. NCBI nr
Match: XP_023546406.1 (transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: Q9FUY2 (Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2) HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37 Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: O48847 (Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 8.9e-28 Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: F4KB17 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08 Identity = 39/125 (31.20%), Postives = 55/125 (44.00%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: Q10282 (Guanine nucleotide-binding protein subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=git5 PE=3 SV=2) HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07 Identity = 37/151 (24.50%), Postives = 63/151 (41.72%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: Q8H0T9 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3) HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07 Identity = 39/125 (31.20%), Postives = 54/125 (43.20%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1EPH1 (transcriptional corepressor LEUNIG-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436193 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1KDP9 (transcriptional corepressor LEUNIG-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492319 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1K4U7 (transcriptional corepressor LEUNIG-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492319 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1ENU6 (transcriptional corepressor LEUNIG-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436193 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55 Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0
BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A1S4DVH9 (LOW QUALITY PROTEIN: transcriptional corepressor LEUNIG OS=Cucumis melo OX=3656 GN=LOC103488265 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50 Identity = 112/192 (58.33%), Postives = 119/192 (61.98%), Query Frame = 0
BLAST of Carg08341 vs. TAIR 10
Match: AT4G32551.1 (LisH dimerisation motif;WD40/YVTN repeat-like-containing domain ) HSP 1 Score: 157.1 bits (396), Expect = 8.8e-39 Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 0
BLAST of Carg08341 vs. TAIR 10
Match: AT4G32551.2 (LisH dimerisation motif;WD40/YVTN repeat-like-containing domain ) HSP 1 Score: 157.1 bits (396), Expect = 8.8e-39 Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 0
BLAST of Carg08341 vs. TAIR 10
Match: AT2G32700.3 (LEUNIG_homolog ) HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29 Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0
BLAST of Carg08341 vs. TAIR 10
Match: AT2G32700.5 (LEUNIG_homolog ) HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29 Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0
BLAST of Carg08341 vs. TAIR 10
Match: AT2G32700.4 (LEUNIG_homolog ) HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29 Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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