Carg08341 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08341
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcriptional corepressor LEUNIG-like isoform X2
Location	Carg_Chr05: 3538585 .. 3539953 (-)
RNA-Seq Expression	Carg08341
Synteny	Carg08341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGTATCTTGGTTTATAACTAACTAATCCTTTTCTCCATGCTCTTTGTTGGTCGATGCTGAAAAATCGGTAATTATTTGCATATTGGCTCTAGTACATAGTTTCTAAATTGCTTGTCTAAATTAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGGTCTGTTTATATTTGAAGTTGTTCCACCTATTCTTGGTTTTTAACTGCTCATTTAAGTAGTCGATATAGCTCAATTAGTTTAGACATATACCTTTGACCGACCATCCATGTTGTTGGACTCACAGCTCATCTCATTATGCTTTTTCAGTGCCAATTTGTTGCATAGTTATGTTTCTGAAATTTCATGTGCATCAACTTACCTTTTTGGATGAAATATGTGGTTCTAAGTATAGGGACACACCAAAACGGTTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCGGTTCGAGTATGGACACTTGCTTCGGGCAACGAGGGCGAATCCATTCACGACTTGAGCTGTAGCGGCAATAAGTTCCACTCGTGCGTTTTTCATCCCATCCAATCTAGTTTACTGGTCATTGGATGTTACCAGGCAAGTCCAATCTTGTTGATTAAGCTTCAAAGGATGAATCAATTATTCCCCTCTAACCTCCATTTTTTTTGCTGCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAAAACAAAGAAAAAAAGACGAAAACCCGAAAACGAAGAAAAGGTAATCATCACATCACACTACTACTAGAACTAAAAGCTAAAGCAGTGAGTGATCTGGTACTGGCTTGTGTTTTTTTTAATCAGGACTTGTAATTTTTGTTTGTTTTTTGTTCCTGTTTTGGGTTTAGTAGAATATGAACTCTGACATAACTGTTCTTCTTGTAATTGGACACCCATCCACTGGTAGAATGTATACTATTTACTCTTCCCCTTGCTCTTCTGAAAAGCCTTTAGCCTCATTATTGATGTACTAGAGAGAGCAAGAACATGGCTTAAAGCTTACCAGAAAAAAAGGCAAAAGGGCAACAAGTTGTGTTT

mRNA sequence

ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAAAACAAAGAAAAAAAGACGAAAACCCGAAAACGAAGAAAAGGTAATCATCACATCACACTACTACTAGAACTAAAAGCTAAAGCAGTGAGTGATCTGGTACTGGCTTGTGTTTTTTTTAATCAGGACTTGTAATTTTTGTTTGTTTTTTGTTCCTGTTTTGGGTTTAGTAGAATATGAACTCTGACATAACTGTTCTTCTTGTAATTGGACACCCATCCACTGGTAGAATGTATACTATTTACTCTTCCCCTTGCTCTTCTGAAAAGCCTTTAGCCTCATTATTGATGTACTAGAGAGAGCAAGAACATGGCTTAAAGCTTACCAGAAAAAAAGGCAAAAGGGCAACAAGTTGTGTTT

Coding sequence (CDS)

ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAA

Protein sequence

MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWK

Homology

[Close]

BLAST of Carg08341 vs. NCBI nr
Match: KAG7029777.1 (Transcriptional corepressor LEUNIG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60

Query: 61  VSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIK 120
           VSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIK
Sbjct: 61  VSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIK 120

Query: 121 LWK 124
           LWK
Sbjct: 121 LWK 123

[Close]

BLAST of Carg08341 vs. NCBI nr
Match: XP_023546409.1 (transcriptional corepressor LEUNIG-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 710 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 769

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 770 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 829

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 830 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 889

[Close]

BLAST of Carg08341 vs. NCBI nr
Match: XP_022997382.1 (transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 710 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 769

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 770 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 829

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 830 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 889

[Close]

BLAST of Carg08341 vs. NCBI nr
Match: XP_022929684.1 (transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita moschata] >XP_022929685.1 transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 704 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 763

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 764 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 823

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 824 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 883

[Close]

BLAST of Carg08341 vs. NCBI nr
Match: XP_023546406.1 (transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 732 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 791

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 792 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 851

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 852 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 911

[Close]

BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: Q9FUY2 (Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 2   SLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIV 61
           SLDFHP K+D ICSCD D EIRYW+I NGSC  V+KGG+ Q+RFQPR+G+Y AA+  N+V
Sbjct: 741 SLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLV 800

Query: 62  SIFDVETQARLHS----------------------------------------------- 121
           ++ DVETQA  HS                                               
Sbjct: 801 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSC 860

Query: 122 ----------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVAS 124
                                 +QSLELWN +ENKTM + AHEGLI+SLA STA+GLVAS
Sbjct: 861 NGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVAS 920

[Close]

BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: O48847 (Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.9e-28
Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MS+DFHPKK + +CSCD + +IR+W+I N SC    KG + Q+RFQPR G++ AAA +N 
Sbjct: 599 MSIDFHPKKTELLCSCDSNNDIRFWDI-NASCVRAVKGASTQVRFQPRTGQFLAAASENT 658

Query: 61  VSIFDVET-----------QARLHS----------------------------------- 120
           VSIFD+E             + +HS                                   
Sbjct: 659 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNS 718

Query: 121 ---------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASA 124
                                +Q++ELWNT ENK M V+ HE +IS+LA S ++G+VASA
Sbjct: 719 GNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASA 778

[Close]

BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: F4KB17 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 39/125 (31.20%), Postives = 55/125 (44.00%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKG---GTGQLRFQPRLGRYFAAAV 60
           +S++FHP  E F  S   D  ++ W+I    C   +KG   G   LRF P      +   
Sbjct: 105 VSVNFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGE 164

Query: 61  DNIVSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDK 120
           DN+V ++D+     LH F+S                HEG I SL       L+A+ S DK
Sbjct: 165 DNVVKVWDLTAGKLLHEFKS----------------HEGKIQSLDFHPHEFLLATGSADK 212

Query: 121 FIKLW 123
            +K W
Sbjct: 225 TVKFW 212

[Close]

BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: Q10282 (Guanine nucleotide-binding protein subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=git5 PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 37/151 (24.50%), Postives = 63/151 (41.72%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLR---FQPRLGRYFAAAV 60
           +SLDF P   +   +   D   + W++    C A F G T  +    F P    +   A 
Sbjct: 151 VSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCATFPGNTSDINSISFFPSNADFVTGAE 210

Query: 61  DNIVSIFDVETQARLHSFQS-------------------------LELWNTTENKTM-FV 120
           D I   FD+   A +  + S                          E+W++  +KT+  +
Sbjct: 211 DGIARCFDIRASAEIFQYSSPSSSPINSVLFSKSGKLLFIAKDKTCEVWDSISSKTITSL 270

Query: 121 SAHEGLISSLAGSTASGLVASASHDKFIKLW 123
           + HE  ISSLA ++   ++A+ S D+ ++LW
Sbjct: 271 TGHENRISSLALTSDGTMLATGSWDECVRLW 301

[Close]

BLAST of Carg08341 vs. ExPASy Swiss-Prot
Match: Q8H0T9 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 39/125 (31.20%), Postives = 54/125 (43.20%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKG---GTGQLRFQPRLGRYFAAAV 60
           +S+DFHP  E F  S   D  ++ W+I    C   +KG   G   LRF P      +   
Sbjct: 105 ISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGE 164

Query: 61  DNIVSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDK 120
           DNIV ++D+     L  F+S                HEG I SL       L+A+ S D+
Sbjct: 165 DNIVKVWDLTAGKLLTEFKS----------------HEGQIQSLDFHPHEFLLATGSADR 212

Query: 121 FIKLW 123
            +K W
Sbjct: 225 TVKFW 212

[Close]

BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1EPH1 (transcriptional corepressor LEUNIG-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436193 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 704 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 763

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 764 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 823

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 824 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 883

[Close]

BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1KDP9 (transcriptional corepressor LEUNIG-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492319 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 701 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 760

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 761 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 820

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 821 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 880

[Close]

BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1K4U7 (transcriptional corepressor LEUNIG-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492319 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 710 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 769

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 770 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 829

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 830 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 889

[Close]

BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A6J1ENU6 (transcriptional corepressor LEUNIG-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436193 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 122/192 (63.54%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI
Sbjct: 695 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 754

Query: 61  VSIFDVETQARLHSF--------------------------------------------- 120
           VSIFDVETQARLHSF                                             
Sbjct: 755 VSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLS 814

Query: 121 ------------------------QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                   QSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA
Sbjct: 815 CSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 874

[Close]

BLAST of Carg08341 vs. ExPASy TrEMBL
Match: A0A1S4DVH9 (LOW QUALITY PROTEIN: transcriptional corepressor LEUNIG OS=Cucumis melo OX=3656 GN=LOC103488265 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50
Identity = 112/192 (58.33%), Postives = 119/192 (61.98%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MSLDFHPKK+DFICSCDGDGEIRYWNITNGSCAAVFKGGTG +RFQPRLGRYFAA VDNI
Sbjct: 699 MSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRLGRYFAAVVDNI 758

Query: 61  VSIFDVETQARLHS---------------------------------------------- 120
           VSIFDVETQARLHS                                              
Sbjct: 759 VSIFDVETQARLHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELS 818

Query: 121 -----------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVA 124
                                  ++SLELWNTTENKTM +SAHEGL+SSLA STASGLVA
Sbjct: 819 CNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSTASGLVA 878

[Close]

BLAST of Carg08341 vs. TAIR 10
Match: AT4G32551.1 (LisH dimerisation motif;WD40/YVTN repeat-like-containing domain )

HSP 1 Score: 157.1 bits (396), Expect = 8.8e-39
Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 2   SLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIV 61
           SLDFHP K+D ICSCD D EIRYW+I NGSC  V+KGG+ Q+RFQPR+G+Y AA+  N+V
Sbjct: 741 SLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLV 800

Query: 62  SIFDVETQARLHS----------------------------------------------- 121
           ++ DVETQA  HS                                               
Sbjct: 801 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSC 860

Query: 122 ----------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVAS 124
                                 +QSLELWN +ENKTM + AHEGLI+SLA STA+GLVAS
Sbjct: 861 NGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVAS 920

[Close]

BLAST of Carg08341 vs. TAIR 10
Match: AT4G32551.2 (LisH dimerisation motif;WD40/YVTN repeat-like-containing domain )

HSP 1 Score: 157.1 bits (396), Expect = 8.8e-39
Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 2   SLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIV 61
           SLDFHP K+D ICSCD D EIRYW+I NGSC  V+KGG+ Q+RFQPR+G+Y AA+  N+V
Sbjct: 779 SLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLV 838

Query: 62  SIFDVETQARLHS----------------------------------------------- 121
           ++ DVETQA  HS                                               
Sbjct: 839 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSC 898

Query: 122 ----------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVAS 124
                                 +QSLELWN +ENKTM + AHEGLI+SLA STA+GLVAS
Sbjct: 899 NGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVAS 958

[Close]

BLAST of Carg08341 vs. TAIR 10
Match: AT2G32700.3 (LEUNIG_homolog )

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29
Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MS+DFHPKK + +CSCD + +IR+W+I N SC    KG + Q+RFQPR G++ AAA +N 
Sbjct: 599 MSIDFHPKKTELLCSCDSNNDIRFWDI-NASCVRAVKGASTQVRFQPRTGQFLAAASENT 658

Query: 61  VSIFDVET-----------QARLHS----------------------------------- 120
           VSIFD+E             + +HS                                   
Sbjct: 659 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNS 718

Query: 121 ---------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASA 124
                                +Q++ELWNT ENK M V+ HE +IS+LA S ++G+VASA
Sbjct: 719 GNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASA 778

[Close]

BLAST of Carg08341 vs. TAIR 10
Match: AT2G32700.5 (LEUNIG_homolog )

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29
Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MS+DFHPKK + +CSCD + +IR+W+I N SC    KG + Q+RFQPR G++ AAA +N 
Sbjct: 599 MSIDFHPKKTELLCSCDSNNDIRFWDI-NASCVRAVKGASTQVRFQPRTGQFLAAASENT 658

Query: 61  VSIFDVET-----------QARLHS----------------------------------- 120
           VSIFD+E             + +HS                                   
Sbjct: 659 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNS 718

Query: 121 ---------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASA 124
                                +Q++ELWNT ENK M V+ HE +IS+LA S ++G+VASA
Sbjct: 719 GNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASA 778

[Close]

BLAST of Carg08341 vs. TAIR 10
Match: AT2G32700.4 (LEUNIG_homolog )

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29
Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 1   MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNI 60
           MS+DFHPKK + +CSCD + +IR+W+I N SC    KG + Q+RFQPR G++ AAA +N 
Sbjct: 599 MSIDFHPKKTELLCSCDSNNDIRFWDI-NASCVRAVKGASTQVRFQPRTGQFLAAASENT 658

Query: 61  VSIFDVET-----------QARLHS----------------------------------- 120
           VSIFD+E             + +HS                                   
Sbjct: 659 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNS 718

Query: 121 ---------------------FQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASA 124
                                +Q++ELWNT ENK M V+ HE +IS+LA S ++G+VASA
Sbjct: 719 GNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASA 778

The following BLAST results are available for this feature:

BLAST of Carg08341 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029777.1	1.5e-64	100.00	Transcriptional corepressor LEUNIG, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_023546409.1	6.3e-55	63.54	transcriptional corepressor LEUNIG-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022997382.1	6.3e-55	63.54	transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita maxima]	[more]
XP_022929684.1	6.3e-55	63.54	transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita moschata] >XP_0229...	[more]
XP_023546406.1	6.3e-55	63.54	transcriptional corepressor LEUNIG-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08341 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUY2	1.2e-37	45.03	Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 S...	[more]
O48847	8.9e-28	36.84	Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LU...	[more]
F4KB17	7.8e-08	31.20	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis tha...	[more]
Q10282	3.9e-07	24.50	Guanine nucleotide-binding protein subunit beta OS=Schizosaccharomyces pombe (st...	[more]
Q8H0T9	5.1e-07	31.20	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis tha...	[more]

BLAST of Carg08341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPH1	3.0e-55	63.54	transcriptional corepressor LEUNIG-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KDP9	3.0e-55	63.54	transcriptional corepressor LEUNIG-like isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1K4U7	3.0e-55	63.54	transcriptional corepressor LEUNIG-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1ENU6	3.0e-55	63.54	transcriptional corepressor LEUNIG-like isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A1S4DVH9	2.3e-50	58.33	LOW QUALITY PROTEIN: transcriptional corepressor LEUNIG OS=Cucumis melo OX=3656 ...	[more]

BLAST of Carg08341 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32551.1	8.8e-39	45.03	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain	[more]
AT4G32551.2	8.8e-39	45.03	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain	[more]
AT2G32700.3	6.3e-29	36.84	LEUNIG_homolog	[more]
AT2G32700.5	6.3e-29	36.84	LEUNIG_homolog	[more]
AT2G32700.4	6.3e-29	36.84	LEUNIG_homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 84..123 e-value: 0.0038 score: 26.5 coord: 29..65 e-value: 17.0 score: 9.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 90..123 e-value: 0.0057 score: 17.5
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..35 score: 9.104886
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 91..123 score: 12.246197
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..76 e-value: 1.1E-10 score: 42.8
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 77..123 e-value: 3.6E-7 score: 31.4
None	No IPR available	PANTHER	PTHR44376:SF23	PROTEIN, PUTATIVE-RELATED	coord: 1..76
None	No IPR available	PANTHER	PTHR44376:SF23	PROTEIN, PUTATIVE-RELATED	coord: 74..123
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 91..123 score: 11.523771
IPR044716	Transcriptional corepressor LEUNIG-like	PANTHER	PTHR44376	TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8	coord: 74..123 coord: 1..76
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08341-RA	Carg08341-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003714	transcription corepressor activity