Carg08043 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08043
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 1929541 .. 1930872 (+)
RNA-Seq ExpressionCarg08043
SyntenyCarg08043
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACCTGACTGAAGGCCGAGCACATCGATTGGTAATTAACTTGACTTTTCTCGAATCTGACTTTGAAATGTGTGTTGGTGCGCGCGGTACGCTGGAAACGGCAGCGAGAAAATGTAGCCGAAGCAAGAAGAATCGGCTTGCGAATTGGAACAAATCTGTTTGATGAATGACCTGACTGAAGGCCGAGCACATCGATTGGTAATCAACTTGACTTTTCTCGAATCTGACTTTGTCTAAATTTTACATTCGTTTACTTACAATAAAATTATATAATCCATACATGTAATCATATTGAAGAAATTCTCAAATGCTATCACATATCTTTACTAAATATAAGAGGAAAATATGGATTCAATGCTGTTGATGCTTGTAGACTTGTTTTTTAATGAAATTATTGTTTGTTTGGATTTGAATTCAAAATCAACCTTATTTCTGCTTAGTACTCGATTGAAGTGAGTGAAATAATCAATACTGTGCGCACTTTGGGTTACATTTATGATATAGATTAACTCATCTGAAATTATTGCTGTACATTTTTTATATGTAAGAAATCTATATTTCTTTTTTGTTCTTTCGAAATTCGAATTTTCATTTATCATCTTGTTTAGAATATTTCATTTGAACTGTCTATAAGTGTATGCCATTACAAATAAATCTACAATTCATAAACGTTAAGTTATGCAGGCTAATTTTATTGTAATTATCATTACCTTCATGATTAGAAAAACTAGATTGAAACATCAGTCTAGCTATAACCTGAGCTTTATTCCTGGAGTTTGATTGTGTTGATGAAGCTCTTTCCTTCTGCAAGATCATTGCTGAAGAGAAATTTGAGAAAATCGTTGAATTTGCTCTCTTTACATTTCTATGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTTGTTTTCTCGTCCATTCCCAAGCTGTGCAGACTGGTAATGGTGATTCTTGTGCTCCCAGAATTGACAGTGGCTCTGTGGACAAAACCTTGTAAAGCCCATTGCTCAGAACCTCCCACATGGACATGCAGCGCGCCATCAATTTTTTGGAACCAGCATCCATCTCCCATCAGCCATGTCCATGTCTTCCAGGCCCTGGCTGCTTTGAAAAGAACTGTAGTCTGTATGTGGCTGCAGCTCAAGTCCGACCAGTCTCGTCTGCTTTAGAAATTGAGTTCACTTCTACTCCTAAATTTATGGTTCATTGAAGAGAATGCCTTCGTAGTACGCCGTGTGTGCAGAGAAGTCCAACCTTTAATCAATTTATACCTATAAATTTTAGGTTTTATTAGAATTAATTTAAATTATCTCTTAGATTTTATTTG

mRNA sequence

ATGAATGACCTGACTGAAGGCCGAGCACATCGATTGGTAATTAACTTGACTTTTCTCGAATCTGACTTTGAAATGTGTGTTGGTGCGCGCGGCTTTGTTTTCTCGTCCATTCCCAAGCTGTGCAGACTGGTAATGGTGATTCTTGTGCTCCCAGAATTGACAGTGGCTCTGTGGACAAAACCTTGTAAAGCCCATTGCTCAGAACCTCCCACATGGACATGCAGCGCGCCATCAATTTTTTGGAACCAGCATCCATCTCCCATCAGCCATGTCCATGTCTTCCAGGCCCTGGCTGCTTTGAAAAGAACTGTAGTCTGTATGTGGCTGCAGCTCAAGTCCGACCAGTCTCGTCTGCTTTAGAAATTGAGTTCACTTCTACTCCTAAATTTATGGTTCATTGAAGAGAATGCCTTCGTAGTACGCCGTGTGTGCAGAGAAGTCCAACCTTTAATCAATTTATACCTATAAATTTTAGGTTTTATTAGAATTAATTTAAATTATCTCTTAGATTTTATTTG

Coding sequence (CDS)

ATGAATGACCTGACTGAAGGCCGAGCACATCGATTGGTAATTAACTTGACTTTTCTCGAATCTGACTTTGAAATGTGTGTTGGTGCGCGCGGCTTTGTTTTCTCGTCCATTCCCAAGCTGTGCAGACTGGTAATGGTGATTCTTGTGCTCCCAGAATTGACAGTGGCTCTGTGGACAAAACCTTGTAAAGCCCATTGCTCAGAACCTCCCACATGGACATGCAGCGCGCCATCAATTTTTTGGAACCAGCATCCATCTCCCATCAGCCATGTCCATGTCTTCCAGGCCCTGGCTGCTTTGAAAAGAACTGTAGTCTGTATGTGGCTGCAGCTCAAGTCCGACCAGTCTCGTCTGCTTTAG

Protein sequence

MNDLTEGRAHRLVINLTFLESDFEMCVGARGFVFSSIPKLCRLVMVILVLPELTVALWTKPCKAHCSEPPTWTCSAPSIFWNQHPSPISHVHVFQALAALKRTVVCMWLQLKSDQSRLL
Homology
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BLAST of Carg08043 vs. NCBI nr
Match: KAG7030867.1 (hypothetical protein SDJN02_04904, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.8 bits (634), Expect = 2.3e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MNDLTEGRAHRLVINLTFLESDFEMCVGARGFVFSSIPKLCRLVMVILVLPELTVALWTK 60
           MNDLTEGRAHRLVINLTFLESDFEMCVGARGFVFSSIPKLCRLVMVILVLPELTVALWTK
Sbjct: 1   MNDLTEGRAHRLVINLTFLESDFEMCVGARGFVFSSIPKLCRLVMVILVLPELTVALWTK 60

Query: 61  PCKAHCSEPPTWTCSAPSIFWNQHPSPISHVHVFQALAALKRTVVCMWLQLKSDQSRLL 120
           PCKAHCSEPPTWTCSAPSIFWNQHPSPISHVHVFQALAALKRTVVCMWLQLKSDQSRLL
Sbjct: 61  PCKAHCSEPPTWTCSAPSIFWNQHPSPISHVHVFQALAALKRTVVCMWLQLKSDQSRLL 119

The following BLAST results are available for this feature:
BLAST of Carg08043 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030867.12.3e-62100.00hypothetical protein SDJN02_04904, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08043 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08043 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08043 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08043-RACarg08043-RAmRNA