Carg07253 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07253
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pre-mRNA-splicing factor 18
Location	Carg_Chr17: 8593075 .. 8595532 (+)
RNA-Seq Expression	Carg07253
Synteny	Carg07253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTCTCGTCTAATTAGACTACGGAAGTAAGCCCTAACAGAGATTCCGGCGAGATAGAACCAGAACAGAATCAATGGATCTCCTCAAGCAAGAACTTCTCAAGAAACGTCAAGTCCTAGCTACTGAAACCGGCGGCAAGCGCGTCTTCAAGCGATCCGAGATCGAACAGAAGCAAATCCAGCAGCTGCGAGAGAAAGAGAAGCGCGAATTGGAAGCTAAAGCTCTTCGCCAATCCTCCACCTCCTCTCCCAACGCCGAGGCCACCTCCGCATCTTCCAAATCCAATTCATTAGCCTCGGCCTCCACTATTTCCTCCTCTGCTGCAATCAATTCTACCGCCACCACTTCGAAATCCCTAACGGACGAGCAGAACATCGACAATCTCGTCCTTCCCAGACAGGAAGTGATTCGGAGACTCCGGTTTCTGAAACAGCCCATTACGCTTTTCGGGGAAGATGACGATGCTCGGCTCGACCGTTTGAAGTTTGTGCTGAAAGCGGGGCTTTTCGAGGTGGATAGTGATTTGACCGAGGGACAAACCAACGATTTTCTTCGGGATATTGCGGAGTTAAGGAAGCGGCAGAAGACGGGGATTTTGAGCGAGAGGAAGAGGCAAAAGAAGGAAGATGGTGCTGGGGAAGAGGGAGATGGAGGTGGGGCTGATGAAGATAGTGCCGATGGGGGGTCGAGTGGGGTCGACGCTGACAAAGATTTGAAGAGAATCAAAGCCAATTTTGATGAGTTATGTGAGGAAGATAAGATATTGGTGTTTTTTAAGAGGTTGTTGAACGAATGGAACCAGGAGTTGGATGAAATGCCTGAAGCAGAGAAGCGGACAGCCAAAGGGAAGTCTATGGTAGCAACATTCAAGCAGTGTGCTCGTTATTTGCATCCTCTGTTCAAGTTTTGTAGGAAGAAGGTACAATTTTTGCCCCCTTTAATTTCACAGTCGATTTGCTGAATGTTTCTTTCTCGCGATGATTCTGCATCACTATATCTTTAGACATCATGGTAGGCTCGAGAATAACCAGAGCATCTTTTCCTTCTTTTTCTTTCTTATTTCGTTTGCCCTGCTAGTGCTCTGGTGAAAAGGTTCCCCTGCGAGCATGTAGATTTATACAGTGATGTTAGTGATGGCTACATAGAATAAGCATGCATATCATTCGTCTTAAACTCATTGATACATTTTGCATTTCAATTGGTCTTGGGAGTGGCACCAATTTGGAATTATTTTTTGATTAGTTCTGTTAGTCTTGATACTCTCACGAGAGAGATCCCACAAGAAAAGCTCAACTTCCTTTTGATATATTTCAAGTGACATATCACCTTGAAAAGATTGGGGTTCTTGGAATCATAGATTCACTGTATCCTCGAGTAAGGAGTTGCAAGAGGAGGGGAGAAAACCCTGTATTGTCAAACGGCCAAATTCATTTATTGGAAGAACACTAAGTAGATATGGGAGAGAGACCCACTCTTCAGTTTCAGATCCAAAAAAATGAGGAAAAAAATAAAAAAATAGAAATAATCTAAAACCAGGGTGTCTTAAATTCAAGTAGAGAGGTTCCAGTTTGAGACAGAGGATCTCCTTGGGTAAGCGTTTGAAAGTGGATCATCACCCATCCAAAAGTTTATAGGAATGTCATTCCAATCGACACTTTGATCCTATTGGAGATTAAATCTTTTTAATTGACAATAGGTCACCAATTGGTAATCATCTTTAGAAGTGTGTTGAGAAGTAGATACTGACGATAAACCATTACTTCATTTATCAGATCGGCTTTTTTACGATTACAGTGTAGGATTATGGTCAGCTGTTTAGATGGTTGCTGACTGTTGTGTGAAGGTGACTGCCTCGTCTAATTGGCGATGAATTATATGATACAAGTTAACAACTTATTGGGCCAACCGAGCATAACTCAATTACTCAAGTCATATACATTCGACCAAGAGATCGGAGATTATAGCTTCTCAATTGAGTATCTTGTAAGATTTCCTTTTTAGCAGATAATTTTCATTAACGTTATTAAAATTTGATTTTAGGTTCTTCCTGACGATATTCGGCAAGCATTGTTGGTAGTTGTTGAATGCTGCATGAAGCGAGACTATCTAGCTGCCATGGATCAATACATTAAGATGGCTATTGGAAATGCCCCCTGGCCTATTGGTGTCACTATGGTTGGTATTCACGAACGTTCGGCTCGTGAGAAGATTTACACGAACAGTGTGGCCCATATCATGAATGACGAAACAACAAGGAAATACTTACAATCAATCAAGAGATTGATGACATTTTGTCAACGGCGCTATCCAACAATGCCATCCAAGGCAGTAGAATTTAACAGCTTGGCAAATGGTAGCGACCTGCAGTCCCTGCTAGCCGAAGAGAGAGTTTCTGGAGGAGGCAAGCAGGGATCTGATGAACGGCTACGAATCATGCCCGCCCCCGAAGATAGCTAA

mRNA sequence

TTCCTCTCGTCTAATTAGACTACGGAAGTAAGCCCTAACAGAGATTCCGGCGAGATAGAACCAGAACAGAATCAATGGATCTCCTCAAGCAAGAACTTCTCAAGAAACGTCAAGTCCTAGCTACTGAAACCGGCGGCAAGCGCGTCTTCAAGCGATCCGAGATCGAACAGAAGCAAATCCAGCAGCTGCGAGAGAAAGAGAAGCGCGAATTGGAAGCTAAAGCTCTTCGCCAATCCTCCACCTCCTCTCCCAACGCCGAGGCCACCTCCGCATCTTCCAAATCCAATTCATTAGCCTCGGCCTCCACTATTTCCTCCTCTGCTGCAATCAATTCTACCGCCACCACTTCGAAATCCCTAACGGACGAGCAGAACATCGACAATCTCGTCCTTCCCAGACAGGAAGTGATTCGGAGACTCCGGTTTCTGAAACAGCCCATTACGCTTTTCGGGGAAGATGACGATGCTCGGCTCGACCGTTTGAAGTTTGTGCTGAAAGCGGGGCTTTTCGAGGTGGATAGTGATTTGACCGAGGGACAAACCAACGATTTTCTTCGGGATATTGCGGAGTTAAGGAAGCGGCAGAAGACGGGGATTTTGAGCGAGAGGAAGAGGCAAAAGAAGGAAGATGGTGCTGGGGAAGAGGGAGATGGAGGTGGGGCTGATGAAGATAGTGCCGATGGGGGGTCGAGTGGGGTCGACGCTGACAAAGATTTGAAGAGAATCAAAGCCAATTTTGATGAGTTATGTGAGGAAGATAAGATATTGGTGTTTTTTAAGAGGTTGTTGAACGAATGGAACCAGGAGTTGGATGAAATGCCTGAAGCAGAGAAGCGGACAGCCAAAGGGAAGTCTATGGTAGCAACATTCAAGCAGTGTGCTCGTTATTTGCATCCTCTGTTCAAGTTTTGTAGGAAGAAGGTTCTTCCTGACGATATTCGGCAAGCATTGTTGGTAGTTGTTGAATGCTGCATGAAGCGAGACTATCTAGCTGCCATGGATCAATACATTAAGATGGCTATTGGAAATGCCCCCTGGCCTATTGGTGTCACTATGGTTGGTATTCACGAACGTTCGGCTCGTGAGAAGATTTACACGAACAGTGTGGCCCATATCATGAATGACGAAACAACAAGGAAATACTTACAATCAATCAAGAGATTGATGACATTTTGTCAACGGCGCTATCCAACAATGCCATCCAAGGCAGTAGAATTTAACAGCTTGGCAAATGGTAGCGACCTGCAGTCCCTGCTAGCCGAAGAGAGAGTTTCTGGAGGAGGCAAGCAGGGATCTGATGAACGGCTACGAATCATGCCCGCCCCCGAAGATAGCTAA

Coding sequence (CDS)

ATGGATCTCCTCAAGCAAGAACTTCTCAAGAAACGTCAAGTCCTAGCTACTGAAACCGGCGGCAAGCGCGTCTTCAAGCGATCCGAGATCGAACAGAAGCAAATCCAGCAGCTGCGAGAGAAAGAGAAGCGCGAATTGGAAGCTAAAGCTCTTCGCCAATCCTCCACCTCCTCTCCCAACGCCGAGGCCACCTCCGCATCTTCCAAATCCAATTCATTAGCCTCGGCCTCCACTATTTCCTCCTCTGCTGCAATCAATTCTACCGCCACCACTTCGAAATCCCTAACGGACGAGCAGAACATCGACAATCTCGTCCTTCCCAGACAGGAAGTGATTCGGAGACTCCGGTTTCTGAAACAGCCCATTACGCTTTTCGGGGAAGATGACGATGCTCGGCTCGACCGTTTGAAGTTTGTGCTGAAAGCGGGGCTTTTCGAGGTGGATAGTGATTTGACCGAGGGACAAACCAACGATTTTCTTCGGGATATTGCGGAGTTAAGGAAGCGGCAGAAGACGGGGATTTTGAGCGAGAGGAAGAGGCAAAAGAAGGAAGATGGTGCTGGGGAAGAGGGAGATGGAGGTGGGGCTGATGAAGATAGTGCCGATGGGGGGTCGAGTGGGGTCGACGCTGACAAAGATTTGAAGAGAATCAAAGCCAATTTTGATGAGTTATGTGAGGAAGATAAGATATTGGTGTTTTTTAAGAGGTTGTTGAACGAATGGAACCAGGAGTTGGATGAAATGCCTGAAGCAGAGAAGCGGACAGCCAAAGGGAAGTCTATGGTAGCAACATTCAAGCAGTGTGCTCGTTATTTGCATCCTCTGTTCAAGTTTTGTAGGAAGAAGGTTCTTCCTGACGATATTCGGCAAGCATTGTTGGTAGTTGTTGAATGCTGCATGAAGCGAGACTATCTAGCTGCCATGGATCAATACATTAAGATGGCTATTGGAAATGCCCCCTGGCCTATTGGTGTCACTATGGTTGGTATTCACGAACGTTCGGCTCGTGAGAAGATTTACACGAACAGTGTGGCCCATATCATGAATGACGAAACAACAAGGAAATACTTACAATCAATCAAGAGATTGATGACATTTTGTCAACGGCGCTATCCAACAATGCCATCCAAGGCAGTAGAATTTAACAGCTTGGCAAATGGTAGCGACCTGCAGTCCCTGCTAGCCGAAGAGAGAGTTTCTGGAGGAGGCAAGCAGGGATCTGATGAACGGCTACGAATCATGCCCGCCCCCGAAGATAGCTAA

Protein sequence

MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPNAEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKRQKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS

Homology

[Close]

BLAST of Carg07253 vs. NCBI nr
Match: KAG6575910.1 (Pre-mRNA-splicing factor 18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014444.1 Pre-mRNA-splicing factor 18 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 779.2 bits (2011), Expect = 1.7e-221
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN
Sbjct: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. NCBI nr
Match: XP_023549183.1 (pre-mRNA-splicing factor 18-like [Cucurbita pepo subsp. pepo] >XP_023549184.1 pre-mRNA-splicing factor 18-like [Cucurbita pepo subsp. pepo] >XP_023549185.1 pre-mRNA-splicing factor 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 774.6 bits (1999), Expect = 4.3e-220
Identity = 417/420 (99.29%), Postives = 418/420 (99.52%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSST+SPN
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTTSPN 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATSASSKSNSLASAST SSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEATSASSKSNSLASASTTSSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. NCBI nr
Match: XP_022954136.1 (pre-mRNA-splicing factor 18 [Cucurbita moschata] >XP_022954137.1 pre-mRNA-splicing factor 18 [Cucurbita moschata] >XP_022954138.1 pre-mRNA-splicing factor 18 [Cucurbita moschata])

HSP 1 Score: 772.7 bits (1994), Expect = 1.6e-219
Identity = 417/420 (99.29%), Postives = 417/420 (99.29%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATSASSKSNSLASAST SSSAAINSTATTSKSLTDEQNIDNLVL RQEVIRRLRFLKQ
Sbjct: 61  AEATSASSKSNSLASASTTSSSAAINSTATTSKSLTDEQNIDNLVLTRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. NCBI nr
Match: XP_022992522.1 (pre-mRNA-splicing factor 18-like [Cucurbita maxima] >XP_022992523.1 pre-mRNA-splicing factor 18-like [Cucurbita maxima] >XP_022992524.1 pre-mRNA-splicing factor 18-like [Cucurbita maxima])

HSP 1 Score: 771.2 bits (1990), Expect = 4.7e-219
Identity = 415/420 (98.81%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATSASSKSNSLASAS  SSSAAINSTATTSKS+TDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEATSASSKSNSLASASATSSSAAINSTATTSKSVTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADEDSADGGSSG DADKDLKRIKANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEDSADGGSSGADADKDLKRIKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. NCBI nr
Match: XP_038897671.1 (pre-mRNA-splicing factor 18 [Benincasa hispida] >XP_038897672.1 pre-mRNA-splicing factor 18 [Benincasa hispida])

HSP 1 Score: 750.4 bits (1936), Expect = 8.6e-213
Identity = 404/420 (96.19%), Postives = 410/420 (97.62%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS+TS+  
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSTTSAAA 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATS SSKSN LASAST SSS AINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEATSTSSKSNPLASASTTSSSVAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PIT+FGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITIFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADE+SADGGSSGVDADKDL R+KANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEESADGGSSGVDADKDLNRMKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGK GSDERLRIMPA +DS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKPGSDERLRIMPASDDS 420

[Close]

BLAST of Carg07253 vs. ExPASy Swiss-Prot
Match: Q99633 (Pre-mRNA-splicing factor 18 OS=Homo sapiens OX=9606 GN=PRPF18 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-45
Identity = 135/389 (34.70%), Postives = 207/389 (53.21%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATE---TGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS--S 60
           MD+LK E+L+KRQ++         K+ FKRSE+ +K+ +   E+   +++ K   Q   +
Sbjct: 1   MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 60

Query: 61  TSSPNAEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRL 120
           +S+P  E   A  K                                  + L RQEVIRRL
Sbjct: 61  SSNPVLELELAEEKL--------------------------------PMTLSRQEVIRRL 120

Query: 121 RFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGIL 180
           R   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    I+
Sbjct: 121 RERGEPIRLFGETDYDAFQRLR-----KIEILTPEVNKGLRNDLKAALDKIDQQYLNEIV 180

Query: 181 SERKRQKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFK 240
                     G  E G+    ++      ++ ++  + L       D+  + D I  F K
Sbjct: 181 ----------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLK 240

Query: 241 RLLNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVV 300
            LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +
Sbjct: 241 FLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDI 300

Query: 301 VECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRK 360
           ++  ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RK
Sbjct: 301 IKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRK 342

Query: 361 YLQSIKRLMTFCQRRYPTMPSKAVEFNSL 385
           Y+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 361 YIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

[Close]

BLAST of Carg07253 vs. ExPASy Swiss-Prot
Match: Q8BM39 (Pre-mRNA-splicing factor 18 OS=Mus musculus OX=10090 GN=Prpf18 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-45
Identity = 135/389 (34.70%), Postives = 207/389 (53.21%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATE---TGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS--S 60
           MD+LK E+L+KRQ++         K+ FKRSE+ +K+ +   E+   +++ K   Q   +
Sbjct: 1   MDILKSEILRKRQLVEDRNLLVENKKYFKRSELARKEEEAYYERCGYKIQPKEDDQKPLT 60

Query: 61  TSSPNAEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRL 120
           +S+P  E   A  K                                  + L RQEVIRRL
Sbjct: 61  SSNPVLELELAEEKL--------------------------------PMTLSRQEVIRRL 120

Query: 121 RFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGIL 180
           R   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    I+
Sbjct: 121 RERGEPIRLFGETDYDAFQRLR-----KIEILTPEVNKGLRNDLKAALDKIDQQYLNEIV 180

Query: 181 SERKRQKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFK 240
                     G  E G+    ++      ++ ++  + L       D+  + D I  F K
Sbjct: 181 ----------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLK 240

Query: 241 RLLNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVV 300
            LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +
Sbjct: 241 FLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDI 300

Query: 301 VECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRK 360
           ++  ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RK
Sbjct: 301 IKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRK 342

Query: 361 YLQSIKRLMTFCQRRYPTMPSKAVEFNSL 385
           Y+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 361 YIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

[Close]

BLAST of Carg07253 vs. ExPASy Swiss-Prot
Match: Q5RE03 (Pre-mRNA-splicing factor 18 OS=Pongo abelii OX=9601 GN=PRPF18 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-45
Identity = 135/389 (34.70%), Postives = 206/389 (52.96%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATE---TGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS--S 60
           MD+LK E+L+KRQ++         K+ FKRSE+ +K+ +   E+    ++ K   Q   +
Sbjct: 1   MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYRIQPKEEDQKPLT 60

Query: 61  TSSPNAEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRL 120
           +S+P  E   A  K                                  + L RQEVIRRL
Sbjct: 61  SSNPVLELELAEEKL--------------------------------PMTLSRQEVIRRL 120

Query: 121 RFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGIL 180
           R   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    I+
Sbjct: 121 RERGEPIRLFGETDYDAFQRLR-----KIEILTPEVNKGLRNDLKAALDKIDQQYLNEIV 180

Query: 181 SERKRQKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFK 240
                     G  E G+    ++      ++ ++  + L       D+  + D I  F K
Sbjct: 181 ----------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLK 240

Query: 241 RLLNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVV 300
            LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +
Sbjct: 241 FLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDI 300

Query: 301 VECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRK 360
           ++  ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RK
Sbjct: 301 IKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRK 342

Query: 361 YLQSIKRLMTFCQRRYPTMPSKAVEFNSL 385
           Y+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 361 YIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

[Close]

BLAST of Carg07253 vs. ExPASy Swiss-Prot
Match: Q2HJ41 (Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-44
Identity = 134/389 (34.45%), Postives = 207/389 (53.21%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATE---TGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS--S 60
           MD+LK E+L+KRQ++         K+ FKRSE+ +K+ +   E+   +++ K   Q   +
Sbjct: 1   MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKDEDQKPLT 60

Query: 61  TSSPNAEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRL 120
           +S+P  E   A  K                                  + L RQEVIRRL
Sbjct: 61  SSNPVLELELAEEKL--------------------------------PMTLSRQEVIRRL 120

Query: 121 RFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGIL 180
           R   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    ++
Sbjct: 121 RERGEPIRLFGETDYDAFQRLR-----KIEILTPEVNKGLRNDLKAALDKIDQQYLNELV 180

Query: 181 SERKRQKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFK 240
                     G  E G+    ++      ++ ++  + L       D+  + D I  F K
Sbjct: 181 ----------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLK 240

Query: 241 RLLNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVV 300
            LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +
Sbjct: 241 FLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDI 300

Query: 301 VECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRK 360
           ++  ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RK
Sbjct: 301 IKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRK 342

Query: 361 YLQSIKRLMTFCQRRYPTMPSKAVEFNSL 385
           Y+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 361 YIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

[Close]

BLAST of Carg07253 vs. ExPASy Swiss-Prot
Match: Q9JKB8 (Pre-mRNA-splicing factor 18 OS=Rattus norvegicus OX=10116 GN=Prpf18 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-44
Identity = 134/389 (34.45%), Postives = 207/389 (53.21%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATE---TGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS--S 60
           MD+LK E+L+KRQ++         K+ FKRSE+ +K+ +   E+   +++ K   Q   +
Sbjct: 1   MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKVQPKEDDQKPLT 60

Query: 61  TSSPNAEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRL 120
           +S+P  E   A  K                                  + L RQEVIRRL
Sbjct: 61  SSNPVLELELAEEKL--------------------------------PMTLSRQEVIRRL 120

Query: 121 RFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGIL 180
           R   +P+ LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    I+
Sbjct: 121 RERGEPMRLFGETDYDAFQRLR-----KIEILTPEVNKGLRNDLKAALDKIDQQYLNEIV 180

Query: 181 SERKRQKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFK 240
                     G  E G+    ++      ++ ++  + L       D+  + D I  F K
Sbjct: 181 ----------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLK 240

Query: 241 RLLNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVV 300
            LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +
Sbjct: 241 FLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDI 300

Query: 301 VECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRK 360
           ++  ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RK
Sbjct: 301 IKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRK 342

Query: 361 YLQSIKRLMTFCQRRYPTMPSKAVEFNSL 385
           Y+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 361 YIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

[Close]

BLAST of Carg07253 vs. ExPASy TrEMBL
Match: A0A6J1GQ96 (Pre-mRNA-splicing factor 18 OS=Cucurbita moschata OX=3662 GN=LOC111456490 PE=3 SV=1)

HSP 1 Score: 772.7 bits (1994), Expect = 7.9e-220
Identity = 417/420 (99.29%), Postives = 417/420 (99.29%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATSASSKSNSLASAST SSSAAINSTATTSKSLTDEQNIDNLVL RQEVIRRLRFLKQ
Sbjct: 61  AEATSASSKSNSLASASTTSSSAAINSTATTSKSLTDEQNIDNLVLTRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. ExPASy TrEMBL
Match: A0A6J1JZG6 (Pre-mRNA-splicing factor 18 OS=Cucurbita maxima OX=3661 GN=LOC111488824 PE=3 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 2.3e-219
Identity = 415/420 (98.81%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEATSASSKSNSLASAS  SSSAAINSTATTSKS+TDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEATSASSKSNSLASASATSSSAAINSTATTSKSVTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADEDSADGGSSG DADKDLKRIKANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEDSADGGSSGADADKDLKRIKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. ExPASy TrEMBL
Match: A0A5D3DRE9 (Pre-mRNA-splicing factor 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001610 PE=3 SV=1)

HSP 1 Score: 746.5 bits (1926), Expect = 6.0e-212
Identity = 402/420 (95.71%), Postives = 408/420 (97.14%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS+ S+  
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSTASATA 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEA S SSKSN LASAST SSS AI+ST TTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEAASTSSKSNPLASASTTSSSVAISSTTTTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADE+SADGGSSGV+ DKDLKR+KANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEESADGGSSGVETDKDLKRMKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGK GSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKLGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. ExPASy TrEMBL
Match: A0A0A0K7C9 (Pre-mRNA-splicing factor 18 OS=Cucumis sativus OX=3659 GN=Csa_7G388420 PE=3 SV=1)

HSP 1 Score: 745.0 bits (1922), Expect = 1.8e-211
Identity = 401/420 (95.48%), Postives = 407/420 (96.90%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQ+QIQQLREKEKRELEAKALRQS+TS+  
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQRQIQQLREKEKRELEAKALRQSTTSATA 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEA S SSKSN LASAST SSS A NST TTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEAVSTSSKSNPLASASTTSSSVATNSTTTTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGGADE+SADGGSSGV+ DKDLKR+KANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGADEESADGGSSGVETDKDLKRMKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           W QELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WKQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGK GSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKLGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. ExPASy TrEMBL
Match: A0A1S3BS26 (Pre-mRNA-splicing factor 18 OS=Cucumis melo OX=3656 GN=LOC103492665 PE=3 SV=1)

HSP 1 Score: 744.6 bits (1921), Expect = 2.3e-211
Identity = 401/420 (95.48%), Postives = 407/420 (96.90%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLLKQELLKKRQ LATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQS+ S+  
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSTASATA 60

Query: 61  AEATSASSKSNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120
           AEA S SSKSN LASAST SSS AI+ST TTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ
Sbjct: 61  AEAASTSSKSNPLASASTTSSSVAISSTTTTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180
           PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 181 QKKEDGAGEEGDGGGADEDSADGGSSGVDADKDLKRIKANFDELCEEDKILVFFKRLLNE 240
           QKKEDGAGEEGDGGG DE+SADGGSSGV+ DKDLKR+KANFDELCEEDKILVFFKRLLNE
Sbjct: 181 QKKEDGAGEEGDGGGPDEESADGGSSGVETDKDLKRMKANFDELCEEDKILVFFKRLLNE 240

Query: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300
           WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM
Sbjct: 241 WNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCM 300

Query: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360
           KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI
Sbjct: 301 KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 360

Query: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQGSDERLRIMPAPEDS 420
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGK GSDERLRIMPAPEDS
Sbjct: 361 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKLGSDERLRIMPAPEDS 420

[Close]

BLAST of Carg07253 vs. TAIR 10
Match: AT1G03140.1 (splicing factor Prp18 family protein )

HSP 1 Score: 542.7 bits (1397), Expect = 2.5e-154
Identity = 298/424 (70.28%), Postives = 357/424 (84.20%), Query Frame = 0


Query: 1   MDLLKQELLKKRQVLATETGGKRVFKRSEIEQKQIQQLREKEKRELEAKALRQSSTSSPN 60
           MDLL++E+LKKR+ LA E+GGK+ FKRSEIEQK+IQ+LRE+E+RE E KA R+++ ++  
Sbjct: 1   MDLLREEILKKRKSLAEESGGKKFFKRSEIEQKKIQKLREEERREHELKAQRRAAAAASG 60

Query: 61  AEATSASSK--SNSLASASTISSSAAINSTATTSKSLTDEQNIDNLVLPRQEVIRRLRFL 120
            +  S+ S   S++ A++++  SSA+  +    SK+LTDE    NL+LPRQEVIRRLRFL
Sbjct: 61  GDGKSSGSAPGSSNAATSASSKSSASDAAAIADSKALTDE----NLILPRQEVIRRLRFL 120

Query: 121 KQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSER 180
           KQP+TLFGEDD +RLDRLK+VLK GLFEVDSD+TEGQTNDFLRDIAEL+KRQK+G++ +R
Sbjct: 121 KQPMTLFGEDDQSRLDRLKYVLKEGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGMMGDR 180

Query: 181 KRQKKEDGAGEEGDGGGADEDSADGG-SSGVDADKDLKRIKANFDELCEEDKILVFFKRL 240
           KR+ +++   +EGD G   ED   GG SS VDADKD+KR+KANF++LC+EDKILVF+K+L
Sbjct: 181 KRKSRDERGRDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKL 240

Query: 241 LNEWNQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVE 300
           L EW QELD M   E+RTAKGK MVATFKQCARYL PLF  CRKK LP DIRQAL+V+V 
Sbjct: 241 LIEWKQELDAMENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVN 300

Query: 301 CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL 360
            C+KRDYLAAMD YIK+AIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL
Sbjct: 301 HCIKRDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL 360

Query: 361 QSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGK-QGSDERLRIMPA 420
           QS+KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER  GG + Q S+ERLR+MP+
Sbjct: 361 QSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFFGGNREQVSEERLRLMPS 420

[Close]

BLAST of Carg07253 vs. TAIR 10
Match: AT1G54590.1 (INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: splicing factor Prp18 family protein (TAIR:AT1G03140.1); Has 388 Blast hits to 388 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 132; Plants - 48; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). )

HSP 1 Score: 329.7 bits (844), Expect = 3.4e-90
Identity = 181/290 (62.41%), Postives = 222/290 (76.55%), Query Frame = 0


Query: 132 RLDRLKFVLKAGLF-EVDSDLTEGQTNDFLRDIAELRKRQK-TGILSERKRQKKEDGAGE 191
           RLDRLK+VLK GLF EVD+D+T+G+TNDFLRDI EL+KR++ +G++++RKR+   D    
Sbjct: 86  RLDRLKYVLKEGLFEEVDNDMTQGETNDFLRDITELKKRERSSGLMNDRKRKTSND---- 145

Query: 192 EGDGGGADEDSADGGSSGVDADKDLKRI-KANFDELCEEDKILVFFKRLLNEWNQELDEM 251
                    D   G        +DLK + +ANF++LC+EDKILVF K+LL EW QEL+ M
Sbjct: 146 ---------DELIGAEK-----EDLKLLEEANFEDLCDEDKILVFCKKLLLEWKQELEAM 205

Query: 252 PEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCMKRDYLAAM 311
              E+RTA GK M+ATF QCARYL PLF  CR K LP DIRQ L+V+V C +KRDYL A 
Sbjct: 206 ENTERRTAIGKQMLATFNQCARYLTPLFHLCRNKCLPADIRQGLMVMVNCWIKRDYLDAT 265

Query: 312 DQYIKMAIGNAPWPIGVTMVGIHERSAREKIYT-NSVAHIMNDETTRKYLQSIKRLMTFC 371
            Q+IK+AIGNAPWPIGVTMVGIHERSAREKI T +SVAHIMN+ETTRKYLQS+KRLMTFC
Sbjct: 266 AQFIKLAIGNAPWPIGVTMVGIHERSAREKISTSSSVAHIMNNETTRKYLQSVKRLMTFC 325

Query: 372 QRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKQG-SDERLRIMPA 417
           QRRY  +PSK++EFNSLANGS+L SLLAEER     ++  S+ERL +MP+
Sbjct: 326 QRRYSALPSKSIEFNSLANGSNLHSLLAEERFFAADRERVSEERLWLMPS 357

The following BLAST results are available for this feature:

BLAST of Carg07253 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575910.1	1.7e-221	100.00	Pre-mRNA-splicing factor 18, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_023549183.1	4.3e-220	99.29	pre-mRNA-splicing factor 18-like [Cucurbita pepo subsp. pepo] >XP_023549184.1 pr...	[more]
XP_022954136.1	1.6e-219	99.29	pre-mRNA-splicing factor 18 [Cucurbita moschata] >XP_022954137.1 pre-mRNA-splici...	[more]
XP_022992522.1	4.7e-219	98.81	pre-mRNA-splicing factor 18-like [Cucurbita maxima] >XP_022992523.1 pre-mRNA-spl...	[more]
XP_038897671.1	8.6e-213	96.19	pre-mRNA-splicing factor 18 [Benincasa hispida] >XP_038897672.1 pre-mRNA-splicin...	[more]

BLAST of Carg07253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99633	5.5e-45	34.70	Pre-mRNA-splicing factor 18 OS=Homo sapiens OX=9606 GN=PRPF18 PE=1 SV=1	[more]
Q8BM39	5.5e-45	34.70	Pre-mRNA-splicing factor 18 OS=Mus musculus OX=10090 GN=Prpf18 PE=1 SV=1	[more]
Q5RE03	7.2e-45	34.70	Pre-mRNA-splicing factor 18 OS=Pongo abelii OX=9601 GN=PRPF18 PE=2 SV=1	[more]
Q2HJ41	1.6e-44	34.45	Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 PE=2 SV=1	[more]
Q9JKB8	1.6e-44	34.45	Pre-mRNA-splicing factor 18 OS=Rattus norvegicus OX=10116 GN=Prpf18 PE=2 SV=1	[more]

BLAST of Carg07253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQ96	7.9e-220	99.29	Pre-mRNA-splicing factor 18 OS=Cucurbita moschata OX=3662 GN=LOC111456490 PE=3 S...	[more]
A0A6J1JZG6	2.3e-219	98.81	Pre-mRNA-splicing factor 18 OS=Cucurbita maxima OX=3661 GN=LOC111488824 PE=3 SV=...	[more]
A0A5D3DRE9	6.0e-212	95.71	Pre-mRNA-splicing factor 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0K7C9	1.8e-211	95.48	Pre-mRNA-splicing factor 18 OS=Cucumis sativus OX=3659 GN=Csa_7G388420 PE=3 SV=1	[more]
A0A1S3BS26	2.3e-211	95.48	Pre-mRNA-splicing factor 18 OS=Cucumis melo OX=3656 GN=LOC103492665 PE=3 SV=1	[more]

BLAST of Carg07253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03140.1	2.5e-154	70.28	splicing factor Prp18 family protein	[more]
AT1G54590.1	3.4e-90	62.41	INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; CONTAINS InterPro D...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014906	Pre-mRNA processing factor 4 (PRP4)-like	SMART	SM00500	pr04_2	coord: 106..157 e-value: 1.8E-21 score: 87.3
IPR014906	Pre-mRNA processing factor 4 (PRP4)-like	PFAM	PF08799	PRP4	coord: 111..137 e-value: 1.2E-11 score: 43.9
None	No IPR available	GENE3D	1.20.940.10	Functional domain of the splicing factor Prp18	coord: 204..375 e-value: 3.8E-59 score: 201.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..420
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..72
None	No IPR available	PANTHER	PTHR13007:SF22	BNAA09G50970D PROTEIN	coord: 1..416
None	No IPR available	SUPERFAMILY	47938	Functional domain of the splicing factor Prp18	coord: 207..373
IPR036285	PRP4-like superfamily	GENE3D	4.10.280.110		coord: 78..154 e-value: 5.8E-16 score: 59.7
IPR036285	PRP4-like superfamily	SUPERFAMILY	158230	PRP4-like	coord: 100..141
IPR004098	Prp18	PFAM	PF02840	Prp18	coord: 232..373 e-value: 1.7E-62 score: 209.7
IPR039979	Pre-mRNA-splicing factor 18	PANTHER	PTHR13007	PRE-MRNA SPLICING FACTOR-RELATED	coord: 1..416

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07253-RA	Carg07253-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000350	generation of catalytic spliceosome for second transesterification step
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0071021	U2-type post-spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex