Carg06281 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06281
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box domain-containing protein
LocationCarg_Chr06: 8102815 .. 8106905 (-)
RNA-Seq ExpressionCarg06281
SyntenyCarg06281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCGGCGATCCGTAAGTGTGGAAGAAGCAATCGAGGACGTTGGATTTTGTGATCGAAGTGAGGAAGGAGGAAGAGGCTGAATCCGTTTGAGACTCACTTGAACGGTGAAGAATTTTCCCCCTATTTTTAGCTTCTTCTTTGTTCCCTTTTTTCAAGCCTCGCCTCTCTCTGTCTCTCCCTCTGTCTCTCTCCATTTTACAAATTTTATTTATTTATTTTAATCACTCTTTAATATTCTAATTATTTTCACAAGAAAATTAATTTAATTCTCCATTTTATATTTATTTCCAACACTTTTCATCCATCTGCCAATTTTAAAGTATATAAATAAATTGTTACATAATTTTTATGGTTTAAAATTCCAGATATTAAATTATTTTATCAAAATTATATGCACTAATTTTTTTAATCTAAAGTGTATTTTGCATCCTTTTAAAGGTTTAAATACATATTATTATTAGTTTAAAAGCCCTTTTTTATAATTATTTTGTTTTTTTTAATGTATTTTAAAATTATAATTGTTTTCTTTTTTAGTTAATATTCAACCTTTTTTTAAAATACATTTAAATTCTAAATTAAATTATTATTATTTTTTAAATTTTTAGAATGTTAAAAGAAAGATAATAAATAAAAAAAATTATGGGCGAAAATAAAGTATTTATAAGTTAAATTTTTAAATATATAGAAGGAAGAAAAAGGTCCAATAAAACTACAAATTTTTATTTAAAAAAAAAAACATAATTCAACAACTACAATATTTAAATAAAATGTTAAATTAAATATCTAATCAATCTCTGTAGTTAAAAAAATGATTAATGGATCAATAAATTCCAATTTTATGTTTTTTTAAAGGCAAAATTCAAAATTTTATCTAATATTTTATGAATTAAAAAAAATGTCATACAAATTAGACTTCTCAACACAAAATTGAAATTTTAAAATTTTATTTATACTAAATTAACAAAAAATATATATATATATATATAAATAAATAAATAAAGGGCTTCAAACGATTTAGTCTTATGTTTATTTTATTTTTTAAAATTAAGCTTATAAATATTATATTCATACATGAGCTTACTTGTTTTGTGGTCGGATTTATTTATTTATTTATTTATTTTTGATGTTTTCAAAATTTAACCTAATTTTTTAGAAATAAAATAACATTTTTAAAATTTAGAAATGGATTATAAATTCAAATGTTTTCTTAAAAAAATTGATAGATTTGTTTTTTTATTTGTAAGAATTAAAACGTATAAATAATACTTCAAGTTTTTATTTTTAAAATTAAAAAAAGAAAAGAAAAACAGTAAATAGCTATTTAAACGAATTACAATGTTTTCGAAAACGGTGCTTTCAAAATTCGTGGCGGGAAAAGACTACATATACGAAAGAGGGAGAGGGAATTTTAAAATCCGTCCTCCTAAAATTTTCCGACACTTCAAGTTCGAGCAAATGAACAACGAGCGTCCTTTGATTAGGGTTTTCGGCCAGCGTTCAATTTCATCGTCTTTCCGCTCCTGTTCTTCAAATCCGTAATCTATCGGTCATGATTCTATTTTTTCTCTCTCGACTTTATGTGTTTATTAATTTGTTGTACGTTTTTAATTTCTGGTTCGAAACAGTTTCAAGAGTTCGAATGAAGTTTCCCAAAGCAAATCTATTAAGAAGAGCTCGCATTTGTCGCTCTCGGAATTCCTCGATCGAAAACTGCCGGAATCTTTCGTACTGCAGAGGACGGTGAAGGTAACGAGTTTTGCCTCAGTTTTTTCTGTCTACCTGTCAATTGGAGTTTTAGATTGCGTTTATTTAGGTCTGATTTTTCGATCGGACGTAGAAAATCGAAATGAGAAGATGATCGATGAAATTTAATGGTGATTTTAACTTCGTTGACGATTTGGTTTCTTCTTCTTTCTTTTTATCCGGCTTTAAAACACTATTTATTGATGAATCTTTAATTTCATGTGCATTTATGCGAAATACTGAGAGAAAAAAGGGGGAAATGAAATTTAGAGTGTTAGGAAAGCCATTGATTCCGTTCTTTATACACAGGGGAAGTCCACGCCCTTCTCCTCATTGCAGGGTCCAAGGGATGCAAATAGTTCCATGAATAAACCGATTGGAATTCATTATGAGACGGATTCCCAGACAGAATCAGCTATTTCAAAGGTGCTTTTTGAAGAGTTCAAGCGTTCCGAACCAAACCAAAGTCAAAGTTCAGTTTTAAGCGGTGCTAGTGAAGCAGATATCTTCAGTACAGATGATATGCTAGAATCGAGGAAAAGAAAGATATTAAGTGAAGGCTTTGCTTCCACTACCCCATGTAATTGGCTTACTCTCGTAAGCTATGAAGATTTTGTGTTTGAATGGCTGATGATACTTGAACTTTGTTAACTTTTACCATCAGGTGAGAGCCAAGCGAGGAAGAAGAATGTGGTAGTTCTTGGAGGCGACCCAAAACCCGAGAAAAAGAGAAGGGAGGCGGTTCATGATATCAGAAACAAAAAACCAAAACCTCTCTACAATCACTGTAAGTGTTTGCCATCTTCTTAATACGCTTTTGTTTCTCATATGAATCGCCTCCTTCCCCTTTTGCTCGGATTTTAAACGGTGATGTCCCATATTGGTTGGGGAGGATTGGAAATCTTCTCCTAGTAGACGCATTTTAAAACCTTGAGGAGAAGTCCGAAAAGGACAATATCTGCTAGCGGTGGGCTTGAGCCATTACAAATGGTATCAGAGTCAAACACCGGACAGTGTGCCAGCTTTCTCGCTATTCCTCAAAGGGGGTAGACACGAGGTGGTGTGCCAGTAAGGACGTTGGGCCCCAAAGGAGGTGGATTTGGGGGCGGTCCCATATCGATTAGAAGAAGGAAAGAGTGTCAGTGAGGACGCTGGGCCCTAAAGAGGGATGGATTGTGATGTCCCACATTGGTTGGGAAAGAGAACAAACCGCCATTTATAAGGGTGTGGAAACCTTCTCTCCTAAAGGGGGAAGACACGATGCGGTGTGCCAGTAAGGACGTTGGGCCCCAAAGGGGGGTGGATTTGGGGGCGGTCCCCCATCGATGGGAGGAAGGAAAGAGAGCCAATGAGGATGCTAGGCTCCAAAGGAGGGTGGATTGTGATGTCCCACATTGATTGAAGATGAGAACAAATCGTCCTTCATAAAGGTGTAGAAACCTTCTCCTAGCAGATGTGTTTTAAAGCCTTGAGAGGAAGTCCGAAAGAAGAAACCTTCTTCATAAAGGTGTAGAAACCTTCTCCTAGCAGATGTGTTTTAAAGCCTTGAGAGGAAGTCCGAAAGAAGAAACCTTCCCCTAGCAGATGTGTTTTAAAGCCTTGAGAGGAAGTCCGAAAGAAGAAACCTTCCCCTAGCAGATGTGTTTTAAAACCCTGAGAGGAAGTCCGAAAGAAGAAACCTTCCCCTAGCAGATGTGTTTTAAAACCGTGAGAGGAAGTCCAAAAGAAAATAATATCTACTGGCGGTGATTATTTATTTAGAAACTTAGCAAGTAACCAACAACTATGCATACTAAACTTATTGTTCACGAGTTTAGTTCCAAACTTTTATGTCTATGTCCATTAGTTTGTAAATTTTTAAAAGTATTTAATAGATTCTTAATCTTAAAAGGTGTAATAGATTCTTAAGTTTTCAATTTTAGATTTAGATTAGTTATATATTTAAATTTTTTTAAAATAATTTGATTTATATGATTAAATTTATGTTTAAATTTATTCTTGTATTTTGAGAATACCATTTAAAGATTTACAATCAAATAGATATAAATTTTAAAATTAAGAGACCAAATAAGGTTGGAGGTAAAAAAAAATAGTTTTTTAAATGTAAAGTTTAAAGAATAAAACTACATATTTACCATTATGTATGGTAACTTCTTCGGTTTAAACTGTTTTATTAACCTTCCGATTCATGGTAACTTCTTGTTTTTGCCAACTGTGCAGATGCAAGTGGCGGTGGGTGGTGGGACTGCGACATGGAGGGTGTTGATAGCGAAGAGGTTGGGCTTGGTGAAGTATGGGAAGGAGTTGGGTCTACTACGCTTGGAGGAATAGAATGGCATTGA

mRNA sequence

ATGAAAATCGGCGATCCTTTCAAGAGTTCGAATGAAGTTTCCCAAAGCAAATCTATTAAGAAGAGCTCGCATTTGTCGCTCTCGGAATTCCTCGATCGAAAACTGCCGGAATCTTTCGTACTGCAGAGGACGGTGAAGGGGAAGTCCACGCCCTTCTCCTCATTGCAGGGTCCAAGGGATGCAAATAGTTCCATGAATAAACCGATTGGAATTCATTATGAGACGGATTCCCAGACAGAATCAGCTATTTCAAAGGTGCTTTTTGAAGAGTTCAAGCGTTCCGAACCAAACCAAAGTCAAAGTTCAGTTTTAAGCGGTGCTAGTGAAGCAGATATCTTCAGTACAGATGATATGCTAGAATCGAGGAAAAGAAAGATATTAAGTGAAGGCTTTGCTTCCACTACCCCATATGCAAGTGGCGGTGGGTGGTGGGACTGCGACATGGAGGGTGTTGATAGCGAAGAGGTTGGGCTTGGTGAAGTATGGGAAGGAGTTGGGTCTACTACGCTTGGAGGAATAGAATGGCATTGA

Coding sequence (CDS)

ATGAAAATCGGCGATCCTTTCAAGAGTTCGAATGAAGTTTCCCAAAGCAAATCTATTAAGAAGAGCTCGCATTTGTCGCTCTCGGAATTCCTCGATCGAAAACTGCCGGAATCTTTCGTACTGCAGAGGACGGTGAAGGGGAAGTCCACGCCCTTCTCCTCATTGCAGGGTCCAAGGGATGCAAATAGTTCCATGAATAAACCGATTGGAATTCATTATGAGACGGATTCCCAGACAGAATCAGCTATTTCAAAGGTGCTTTTTGAAGAGTTCAAGCGTTCCGAACCAAACCAAAGTCAAAGTTCAGTTTTAAGCGGTGCTAGTGAAGCAGATATCTTCAGTACAGATGATATGCTAGAATCGAGGAAAAGAAAGATATTAAGTGAAGGCTTTGCTTCCACTACCCCATATGCAAGTGGCGGTGGGTGGTGGGACTGCGACATGGAGGGTGTTGATAGCGAAGAGGTTGGGCTTGGTGAAGTATGGGAAGGAGTTGGGTCTACTACGCTTGGAGGAATAGAATGGCATTGA

Protein sequence

MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH
Homology
[Close]
BLAST of Carg06281 vs. NCBI nr
Match: KAG7028769.1 (hypothetical protein SDJN02_09950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.9 bits (886), Expect = 2.1e-91
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRD 60
           MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRD
Sbjct: 1   MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRD 60

Query: 61  ANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLE 120
           ANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLE
Sbjct: 61  ANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLE 120

Query: 121 SRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH 177
           SRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH
Sbjct: 121 SRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH 176

[Close]
BLAST of Carg06281 vs. NCBI nr
Match: KAG6597301.1 (hypothetical protein SDJN03_10481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 171/213 (80.28%), Postives = 172/213 (80.75%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]
BLAST of Carg06281 vs. NCBI nr
Match: XP_022935388.1 (uncharacterized protein LOC111442284 [Cucurbita moschata])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 171/213 (80.28%), Postives = 172/213 (80.75%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCEGQARKKNVVVLGGDPKPEKKRREAVHDIRNIKPKPLYNHYASGGGW 205

[Close]
BLAST of Carg06281 vs. NCBI nr
Match: XP_023522097.1 (uncharacterized protein LOC111785973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 4.7e-80
Identity = 166/213 (77.93%), Postives = 170/213 (79.81%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVS+SKS KKSSHLSLSEFLDRKLPESFV QRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSESKSTKKSSHLSLSEFLDRKLPESFVPQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQS+SSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSESSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K+LSEGFASTTP                                         YASGGGW
Sbjct: 146 KMLSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]
BLAST of Carg06281 vs. NCBI nr
Match: XP_022975489.1 (uncharacterized protein LOC111474871 [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79
Identity = 165/213 (77.46%), Postives = 168/213 (78.87%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVS+SKS KKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSESKSTKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKP GIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLS AS ADIFSTDDML+SRKR
Sbjct: 86  MNKPTGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSDASGADIFSTDDMLDSRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]
BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A6J1FAE9 (uncharacterized protein LOC111442284 OS=Cucurbita moschata OX=3662 GN=LOC111442284 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.4e-83
Identity = 171/213 (80.28%), Postives = 172/213 (80.75%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCEGQARKKNVVVLGGDPKPEKKRREAVHDIRNIKPKPLYNHYASGGGW 205

[Close]
BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A6J1IKN5 (uncharacterized protein LOC111474871 OS=Cucurbita maxima OX=3661 GN=LOC111474871 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 165/213 (77.46%), Postives = 168/213 (78.87%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVS+SKS KKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSESKSTKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKP GIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLS AS ADIFSTDDML+SRKR
Sbjct: 86  MNKPTGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSDASGADIFSTDDMLDSRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]
BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A5A7U046 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003970 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 132/213 (61.97%), Postives = 146/213 (68.54%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSN+ SQSK  KK+S LSLS+FLDRKLPE+ V QRTVKGKSTPFSSLQGPR++N  
Sbjct: 26  NPFKSSNDDSQSKLAKKNSQLSLSDFLDRKLPETSVPQRTVKGKSTPFSSLQGPRNSN-- 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
            N PI I   TDSQTESAISKVLFE+FKRSEP+Q +  V   ASE DIF+TDD+LESRKR
Sbjct: 86  -NAPIAIDCGTDSQTESAISKVLFEQFKRSEPSQCEYLVSGSASERDIFNTDDILESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K  +EGF STTP                                         YASG GW
Sbjct: 146 KKSNEGFISTTPCESQTRKMNVVVIGGDPRPEQKGMQPIPIARNKKPKPLYNHYASGSGW 205

[Close]
BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A5D3D1M8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002580 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 132/213 (61.97%), Postives = 146/213 (68.54%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSN+ SQSK  KK+S LSLS+FLDRKLPE+ V QRTVKGKSTPFSSLQGPR++N  
Sbjct: 26  NPFKSSNDDSQSKLAKKNSQLSLSDFLDRKLPETSVPQRTVKGKSTPFSSLQGPRNSN-- 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
            N PI I   TDSQTESAISKVLFE+FKRSEP+Q +  V   ASE DIF+TDD+LESRKR
Sbjct: 86  -NAPIAIDCGTDSQTESAISKVLFEQFKRSEPSQCEYLVSGSASERDIFNTDDILESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K  +EGF STTP                                         YASG GW
Sbjct: 146 KKSNEGFISTTPCESQTRKMNVVVIGGDPRPQQKGMQPIPIARNKKPKPLYNHYASGSGW 205

[Close]
BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A1S3AWV7 (uncharacterized protein LOC103483493 OS=Cucumis melo OX=3656 GN=LOC103483493 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 132/213 (61.97%), Postives = 146/213 (68.54%), Query Frame = 0 

Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSN+ SQSK  KK+S LSLS+FLDRKLPE+ V QRTVKGKSTPFSSLQGPR++N  
Sbjct: 26  NPFKSSNDDSQSKLAKKNSQLSLSDFLDRKLPETSVPQRTVKGKSTPFSSLQGPRNSN-- 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
            N PI I   TDSQTESAISKVLFE+FKRSEP+Q +  V   ASE DIF+TDD+LESRKR
Sbjct: 86  -NAPIAIDCGTDSQTESAISKVLFEQFKRSEPSQCEYLVSGSASERDIFNTDDILESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K  +EGF STTP                                         YASG GW
Sbjct: 146 KKSNEGFISTTPCESQTRKMNVVVIGGDPRPEQKGMQPIPIARNKKPKPLYNHYASGSGW 205

[Close]
BLAST of Carg06281 vs. TAIR 10
Match: AT4G13690.1 (unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 137 YASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGI-EWH 177
           YA+G GWWDCDMEGVDSEEVG  EVWEGVGSTT G I +WH
Sbjct: 209 YANGSGWWDCDMEGVDSEEVGHREVWEGVGSTTFGDIVDWH 249

The following BLAST results are available for this feature:
BLAST of Carg06281 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028769.12.1e-91100.00hypothetical protein SDJN02_09950, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597301.11.7e-8280.28hypothetical protein SDJN03_10481, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022935388.11.7e-8280.28uncharacterized protein LOC111442284 [Cucurbita moschata][more]
XP_023522097.14.7e-8077.93uncharacterized protein LOC111785973 [Cucurbita pepo subsp. pepo][more]
XP_022975489.15.2e-7977.46uncharacterized protein LOC111474871 [Cucurbita maxima][more]
BLAST of Carg06281 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06281 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FAE98.4e-8380.28uncharacterized protein LOC111442284 OS=Cucurbita moschata OX=3662 GN=LOC1114422... [more]
A0A6J1IKN52.5e-7977.46uncharacterized protein LOC111474871 OS=Cucurbita maxima OX=3661 GN=LOC111474871... [more]
A0A5A7U0464.7e-5761.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D1M84.7e-5761.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWV74.7e-5761.97uncharacterized protein LOC103483493 OS=Cucumis melo OX=3656 GN=LOC103483493 PE=... [more]
BLAST of Carg06281 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13690.11.1e-1380.49unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..25
NoneNo IPR availablePANTHERPTHR38382RNA-BINDING PROTEINcoord: 137..176
coord: 10..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06281-RACarg06281-RAmRNA