Carg06281 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06281
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box domain-containing protein
Location	Carg_Chr06: 8102815 .. 8106905 (-)
RNA-Seq Expression	Carg06281
Synteny	Carg06281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCGGCGATCCGTAAGTGTGGAAGAAGCAATCGAGGACGTTGGATTTTGTGATCGAAGTGAGGAAGGAGGAAGAGGCTGAATCCGTTTGAGACTCACTTGAACGGTGAAGAATTTTCCCCCTATTTTTAGCTTCTTCTTTGTTCCCTTTTTTCAAGCCTCGCCTCTCTCTGTCTCTCCCTCTGTCTCTCTCCATTTTACAAATTTTATTTATTTATTTTAATCACTCTTTAATATTCTAATTATTTTCACAAGAAAATTAATTTAATTCTCCATTTTATATTTATTTCCAACACTTTTCATCCATCTGCCAATTTTAAAGTATATAAATAAATTGTTACATAATTTTTATGGTTTAAAATTCCAGATATTAAATTATTTTATCAAAATTATATGCACTAATTTTTTTAATCTAAAGTGTATTTTGCATCCTTTTAAAGGTTTAAATACATATTATTATTAGTTTAAAAGCCCTTTTTTATAATTATTTTGTTTTTTTTAATGTATTTTAAAATTATAATTGTTTTCTTTTTTAGTTAATATTCAACCTTTTTTTAAAATACATTTAAATTCTAAATTAAATTATTATTATTTTTTAAATTTTTAGAATGTTAAAAGAAAGATAATAAATAAAAAAAATTATGGGCGAAAATAAAGTATTTATAAGTTAAATTTTTAAATATATAGAAGGAAGAAAAAGGTCCAATAAAACTACAAATTTTTATTTAAAAAAAAAAACATAATTCAACAACTACAATATTTAAATAAAATGTTAAATTAAATATCTAATCAATCTCTGTAGTTAAAAAAATGATTAATGGATCAATAAATTCCAATTTTATGTTTTTTTAAAGGCAAAATTCAAAATTTTATCTAATATTTTATGAATTAAAAAAAATGTCATACAAATTAGACTTCTCAACACAAAATTGAAATTTTAAAATTTTATTTATACTAAATTAACAAAAAATATATATATATATATATAAATAAATAAATAAAGGGCTTCAAACGATTTAGTCTTATGTTTATTTTATTTTTTAAAATTAAGCTTATAAATATTATATTCATACATGAGCTTACTTGTTTTGTGGTCGGATTTATTTATTTATTTATTTATTTTTGATGTTTTCAAAATTTAACCTAATTTTTTAGAAATAAAATAACATTTTTAAAATTTAGAAATGGATTATAAATTCAAATGTTTTCTTAAAAAAATTGATAGATTTGTTTTTTTATTTGTAAGAATTAAAACGTATAAATAATACTTCAAGTTTTTATTTTTAAAATTAAAAAAAGAAAAGAAAAACAGTAAATAGCTATTTAAACGAATTACAATGTTTTCGAAAACGGTGCTTTCAAAATTCGTGGCGGGAAAAGACTACATATACGAAAGAGGGAGAGGGAATTTTAAAATCCGTCCTCCTAAAATTTTCCGACACTTCAAGTTCGAGCAAATGAACAACGAGCGTCCTTTGATTAGGGTTTTCGGCCAGCGTTCAATTTCATCGTCTTTCCGCTCCTGTTCTTCAAATCCGTAATCTATCGGTCATGATTCTATTTTTTCTCTCTCGACTTTATGTGTTTATTAATTTGTTGTACGTTTTTAATTTCTGGTTCGAAACAGTTTCAAGAGTTCGAATGAAGTTTCCCAAAGCAAATCTATTAAGAAGAGCTCGCATTTGTCGCTCTCGGAATTCCTCGATCGAAAACTGCCGGAATCTTTCGTACTGCAGAGGACGGTGAAGGTAACGAGTTTTGCCTCAGTTTTTTCTGTCTACCTGTCAATTGGAGTTTTAGATTGCGTTTATTTAGGTCTGATTTTTCGATCGGACGTAGAAAATCGAAATGAGAAGATGATCGATGAAATTTAATGGTGATTTTAACTTCGTTGACGATTTGGTTTCTTCTTCTTTCTTTTTATCCGGCTTTAAAACACTATTTATTGATGAATCTTTAATTTCATGTGCATTTATGCGAAATACTGAGAGAAAAAAGGGGGAAATGAAATTTAGAGTGTTAGGAAAGCCATTGATTCCGTTCTTTATACACAGGGGAAGTCCACGCCCTTCTCCTCATTGCAGGGTCCAAGGGATGCAAATAGTTCCATGAATAAACCGATTGGAATTCATTATGAGACGGATTCCCAGACAGAATCAGCTATTTCAAAGGTGCTTTTTGAAGAGTTCAAGCGTTCCGAACCAAACCAAAGTCAAAGTTCAGTTTTAAGCGGTGCTAGTGAAGCAGATATCTTCAGTACAGATGATATGCTAGAATCGAGGAAAAGAAAGATATTAAGTGAAGGCTTTGCTTCCACTACCCCATGTAATTGGCTTACTCTCGTAAGCTATGAAGATTTTGTGTTTGAATGGCTGATGATACTTGAACTTTGTTAACTTTTACCATCAGGTGAGAGCCAAGCGAGGAAGAAGAATGTGGTAGTTCTTGGAGGCGACCCAAAACCCGAGAAAAAGAGAAGGGAGGCGGTTCATGATATCAGAAACAAAAAACCAAAACCTCTCTACAATCACTGTAAGTGTTTGCCATCTTCTTAATACGCTTTTGTTTCTCATATGAATCGCCTCCTTCCCCTTTTGCTCGGATTTTAAACGGTGATGTCCCATATTGGTTGGGGAGGATTGGAAATCTTCTCCTAGTAGACGCATTTTAAAACCTTGAGGAGAAGTCCGAAAAGGACAATATCTGCTAGCGGTGGGCTTGAGCCATTACAAATGGTATCAGAGTCAAACACCGGACAGTGTGCCAGCTTTCTCGCTATTCCTCAAAGGGGGTAGACACGAGGTGGTGTGCCAGTAAGGACGTTGGGCCCCAAAGGAGGTGGATTTGGGGGCGGTCCCATATCGATTAGAAGAAGGAAAGAGTGTCAGTGAGGACGCTGGGCCCTAAAGAGGGATGGATTGTGATGTCCCACATTGGTTGGGAAAGAGAACAAACCGCCATTTATAAGGGTGTGGAAACCTTCTCTCCTAAAGGGGGAAGACACGATGCGGTGTGCCAGTAAGGACGTTGGGCCCCAAAGGGGGGTGGATTTGGGGGCGGTCCCCCATCGATGGGAGGAAGGAAAGAGAGCCAATGAGGATGCTAGGCTCCAAAGGAGGGTGGATTGTGATGTCCCACATTGATTGAAGATGAGAACAAATCGTCCTTCATAAAGGTGTAGAAACCTTCTCCTAGCAGATGTGTTTTAAAGCCTTGAGAGGAAGTCCGAAAGAAGAAACCTTCTTCATAAAGGTGTAGAAACCTTCTCCTAGCAGATGTGTTTTAAAGCCTTGAGAGGAAGTCCGAAAGAAGAAACCTTCCCCTAGCAGATGTGTTTTAAAGCCTTGAGAGGAAGTCCGAAAGAAGAAACCTTCCCCTAGCAGATGTGTTTTAAAACCCTGAGAGGAAGTCCGAAAGAAGAAACCTTCCCCTAGCAGATGTGTTTTAAAACCGTGAGAGGAAGTCCAAAAGAAAATAATATCTACTGGCGGTGATTATTTATTTAGAAACTTAGCAAGTAACCAACAACTATGCATACTAAACTTATTGTTCACGAGTTTAGTTCCAAACTTTTATGTCTATGTCCATTAGTTTGTAAATTTTTAAAAGTATTTAATAGATTCTTAATCTTAAAAGGTGTAATAGATTCTTAAGTTTTCAATTTTAGATTTAGATTAGTTATATATTTAAATTTTTTTAAAATAATTTGATTTATATGATTAAATTTATGTTTAAATTTATTCTTGTATTTTGAGAATACCATTTAAAGATTTACAATCAAATAGATATAAATTTTAAAATTAAGAGACCAAATAAGGTTGGAGGTAAAAAAAAATAGTTTTTTAAATGTAAAGTTTAAAGAATAAAACTACATATTTACCATTATGTATGGTAACTTCTTCGGTTTAAACTGTTTTATTAACCTTCCGATTCATGGTAACTTCTTGTTTTTGCCAACTGTGCAGATGCAAGTGGCGGTGGGTGGTGGGACTGCGACATGGAGGGTGTTGATAGCGAAGAGGTTGGGCTTGGTGAAGTATGGGAAGGAGTTGGGTCTACTACGCTTGGAGGAATAGAATGGCATTGA

mRNA sequence

ATGAAAATCGGCGATCCTTTCAAGAGTTCGAATGAAGTTTCCCAAAGCAAATCTATTAAGAAGAGCTCGCATTTGTCGCTCTCGGAATTCCTCGATCGAAAACTGCCGGAATCTTTCGTACTGCAGAGGACGGTGAAGGGGAAGTCCACGCCCTTCTCCTCATTGCAGGGTCCAAGGGATGCAAATAGTTCCATGAATAAACCGATTGGAATTCATTATGAGACGGATTCCCAGACAGAATCAGCTATTTCAAAGGTGCTTTTTGAAGAGTTCAAGCGTTCCGAACCAAACCAAAGTCAAAGTTCAGTTTTAAGCGGTGCTAGTGAAGCAGATATCTTCAGTACAGATGATATGCTAGAATCGAGGAAAAGAAAGATATTAAGTGAAGGCTTTGCTTCCACTACCCCATATGCAAGTGGCGGTGGGTGGTGGGACTGCGACATGGAGGGTGTTGATAGCGAAGAGGTTGGGCTTGGTGAAGTATGGGAAGGAGTTGGGTCTACTACGCTTGGAGGAATAGAATGGCATTGA

Coding sequence (CDS)

ATGAAAATCGGCGATCCTTTCAAGAGTTCGAATGAAGTTTCCCAAAGCAAATCTATTAAGAAGAGCTCGCATTTGTCGCTCTCGGAATTCCTCGATCGAAAACTGCCGGAATCTTTCGTACTGCAGAGGACGGTGAAGGGGAAGTCCACGCCCTTCTCCTCATTGCAGGGTCCAAGGGATGCAAATAGTTCCATGAATAAACCGATTGGAATTCATTATGAGACGGATTCCCAGACAGAATCAGCTATTTCAAAGGTGCTTTTTGAAGAGTTCAAGCGTTCCGAACCAAACCAAAGTCAAAGTTCAGTTTTAAGCGGTGCTAGTGAAGCAGATATCTTCAGTACAGATGATATGCTAGAATCGAGGAAAAGAAAGATATTAAGTGAAGGCTTTGCTTCCACTACCCCATATGCAAGTGGCGGTGGGTGGTGGGACTGCGACATGGAGGGTGTTGATAGCGAAGAGGTTGGGCTTGGTGAAGTATGGGAAGGAGTTGGGTCTACTACGCTTGGAGGAATAGAATGGCATTGA

Protein sequence

MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH

Homology

[Close]

BLAST of Carg06281 vs. NCBI nr
Match: KAG7028769.1 (hypothetical protein SDJN02_09950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.9 bits (886), Expect = 2.1e-91
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRD 60
           MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRD
Sbjct: 1   MKIGDPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRD 60

Query: 61  ANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLE 120
           ANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLE
Sbjct: 61  ANSSMNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLE 120

Query: 121 SRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH 177
           SRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH
Sbjct: 121 SRKRKILSEGFASTTPYASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGIEWH 176

[Close]

BLAST of Carg06281 vs. NCBI nr
Match: KAG6597301.1 (hypothetical protein SDJN03_10481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 171/213 (80.28%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]

BLAST of Carg06281 vs. NCBI nr
Match: XP_022935388.1 (uncharacterized protein LOC111442284 [Cucurbita moschata])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 171/213 (80.28%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCEGQARKKNVVVLGGDPKPEKKRREAVHDIRNIKPKPLYNHYASGGGW 205

[Close]

BLAST of Carg06281 vs. NCBI nr
Match: XP_023522097.1 (uncharacterized protein LOC111785973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 4.7e-80
Identity = 166/213 (77.93%), Postives = 170/213 (79.81%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVS+SKS KKSSHLSLSEFLDRKLPESFV QRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSESKSTKKSSHLSLSEFLDRKLPESFVPQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQS+SSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSESSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K+LSEGFASTTP                                         YASGGGW
Sbjct: 146 KMLSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]

BLAST of Carg06281 vs. NCBI nr
Match: XP_022975489.1 (uncharacterized protein LOC111474871 [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79
Identity = 165/213 (77.46%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVS+SKS KKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSESKSTKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKP GIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLS AS ADIFSTDDML+SRKR
Sbjct: 86  MNKPTGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSDASGADIFSTDDMLDSRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]

BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A6J1FAE9 (uncharacterized protein LOC111442284 OS=Cucurbita moschata OX=3662 GN=LOC111442284 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.4e-83
Identity = 171/213 (80.28%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR
Sbjct: 86  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCEGQARKKNVVVLGGDPKPEKKRREAVHDIRNIKPKPLYNHYASGGGW 205

[Close]

BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A6J1IKN5 (uncharacterized protein LOC111474871 OS=Cucurbita maxima OX=3661 GN=LOC111474871 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 165/213 (77.46%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSNEVS+SKS KKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS
Sbjct: 26  NPFKSSNEVSESKSTKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
           MNKP GIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLS AS ADIFSTDDML+SRKR
Sbjct: 86  MNKPTGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSDASGADIFSTDDMLDSRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           KILSEGFASTTP                                         YASGGGW
Sbjct: 146 KILSEGFASTTPCESQARKKNVVVLGGDPKPEKKRREAVHDIRNKKPKPLYNHYASGGGW 205

[Close]

BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A5A7U046 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003970 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 132/213 (61.97%), Postives = 146/213 (68.54%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSN+ SQSK  KK+S LSLS+FLDRKLPE+ V QRTVKGKSTPFSSLQGPR++N  
Sbjct: 26  NPFKSSNDDSQSKLAKKNSQLSLSDFLDRKLPETSVPQRTVKGKSTPFSSLQGPRNSN-- 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
            N PI I   TDSQTESAISKVLFE+FKRSEP+Q +  V   ASE DIF+TDD+LESRKR
Sbjct: 86  -NAPIAIDCGTDSQTESAISKVLFEQFKRSEPSQCEYLVSGSASERDIFNTDDILESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K  +EGF STTP                                         YASG GW
Sbjct: 146 KKSNEGFISTTPCESQTRKMNVVVIGGDPRPEQKGMQPIPIARNKKPKPLYNHYASGSGW 205

[Close]

BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A5D3D1M8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002580 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 132/213 (61.97%), Postives = 146/213 (68.54%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSN+ SQSK  KK+S LSLS+FLDRKLPE+ V QRTVKGKSTPFSSLQGPR++N  
Sbjct: 26  NPFKSSNDDSQSKLAKKNSQLSLSDFLDRKLPETSVPQRTVKGKSTPFSSLQGPRNSN-- 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
            N PI I   TDSQTESAISKVLFE+FKRSEP+Q +  V   ASE DIF+TDD+LESRKR
Sbjct: 86  -NAPIAIDCGTDSQTESAISKVLFEQFKRSEPSQCEYLVSGSASERDIFNTDDILESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K  +EGF STTP                                         YASG GW
Sbjct: 146 KKSNEGFISTTPCESQTRKMNVVVIGGDPRPQQKGMQPIPIARNKKPKPLYNHYASGSGW 205

[Close]

BLAST of Carg06281 vs. ExPASy TrEMBL
Match: A0A1S3AWV7 (uncharacterized protein LOC103483493 OS=Cucumis melo OX=3656 GN=LOC103483493 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 132/213 (61.97%), Postives = 146/213 (68.54%), Query Frame = 0


Query: 5   DPFKSSNEVSQSKSIKKSSHLSLSEFLDRKLPESFVLQRTVKGKSTPFSSLQGPRDANSS 64
           +PFKSSN+ SQSK  KK+S LSLS+FLDRKLPE+ V QRTVKGKSTPFSSLQGPR++N  
Sbjct: 26  NPFKSSNDDSQSKLAKKNSQLSLSDFLDRKLPETSVPQRTVKGKSTPFSSLQGPRNSN-- 85

Query: 65  MNKPIGIHYETDSQTESAISKVLFEEFKRSEPNQSQSSVLSGASEADIFSTDDMLESRKR 124
            N PI I   TDSQTESAISKVLFE+FKRSEP+Q +  V   ASE DIF+TDD+LESRKR
Sbjct: 86  -NAPIAIDCGTDSQTESAISKVLFEQFKRSEPSQCEYLVSGSASERDIFNTDDILESRKR 145

Query: 125 KILSEGFASTTP-----------------------------------------YASGGGW 177
           K  +EGF STTP                                         YASG GW
Sbjct: 146 KKSNEGFISTTPCESQTRKMNVVVIGGDPRPEQKGMQPIPIARNKKPKPLYNHYASGSGW 205

[Close]

BLAST of Carg06281 vs. TAIR 10
Match: AT4G13690.1 (unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 137 YASGGGWWDCDMEGVDSEEVGLGEVWEGVGSTTLGGI-EWH 177
           YA+G GWWDCDMEGVDSEEVG  EVWEGVGSTT G I +WH
Sbjct: 209 YANGSGWWDCDMEGVDSEEVGHREVWEGVGSTTFGDIVDWH 249

The following BLAST results are available for this feature:

BLAST of Carg06281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028769.1	2.1e-91	100.00	hypothetical protein SDJN02_09950, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6597301.1	1.7e-82	80.28	hypothetical protein SDJN03_10481, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935388.1	1.7e-82	80.28	uncharacterized protein LOC111442284 [Cucurbita moschata]	[more]
XP_023522097.1	4.7e-80	77.93	uncharacterized protein LOC111785973 [Cucurbita pepo subsp. pepo]	[more]
XP_022975489.1	5.2e-79	77.46	uncharacterized protein LOC111474871 [Cucurbita maxima]	[more]

BLAST of Carg06281 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAE9	8.4e-83	80.28	uncharacterized protein LOC111442284 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1IKN5	2.5e-79	77.46	uncharacterized protein LOC111474871 OS=Cucurbita maxima OX=3661 GN=LOC111474871...	[more]
A0A5A7U046	4.7e-57	61.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D1M8	4.7e-57	61.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AWV7	4.7e-57	61.97	uncharacterized protein LOC103483493 OS=Cucumis melo OX=3656 GN=LOC103483493 PE=...	[more]

BLAST of Carg06281 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13690.1	1.1e-13	80.49	unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..25
None	No IPR available	PANTHER	PTHR38382	RNA-BINDING PROTEIN	coord: 137..176 coord: 10..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06281-RA	Carg06281-RA	mRNA