Carg05810 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTGAGTCTTTCATTTTTCTCGGTCTTCGCCGAAAAAAAGAAGAAAAAAAAAGTTTCTGGAAGGAGAAACCTTTCTGGTTCATTGGTTTGGTATGAATGTAGAGATATCATGCCTTTATTATTTGCTGCCATGATCCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGTACAGTTTCGAGTGTCTTAATCTTCCATCACCATGAAATACTTGATTTATCTAATTTCTTAATCCTTCAATATCCCATTGCAGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGCTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTATCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTGACACTCTCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCCTTTAGACGACGTTTGAGAATGGTTCTTGTAAATACTTACAGGAAAAAAGTTAAGCCCATTGTGTGAACTGAGCTGGATATGATGCTTGTCTGTGCTGAAGAACTTGGAATTGAACCATACTTAATGTAACATGGGTAAGATTTGTATTTCCCATAAGTTTTCTTTGTTTTCAGTTATATCGGCAAATGTTTGCGGGCAGTTTGCATGCACAGGAAAAAGCTATCAACTAGTACCTACAAAT ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGCTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTATCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTGACACTCTCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCCTTTAGACGACGTTTGAGAATGGTTCTTGTAAATACTTACAGGAAAAAAGTTAAGCCCATTGTGTGAACTGAGCTGGATATGATGCTTGTCTGTGCTGAAGAACTTGGAATTGAACCATACTTAATGTAACATGGGTAAGATTTGTATTTCCCATAAGTTTTCTTTGTTTTCAGTTATATCGGCAAATGTTTGCGGGCAGTTTGCATGCACAGGAAAAAGCTATCAACTAGTACCTACAAAT ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAG MALYHFMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY Homology
BLAST of Carg05810 vs. NCBI nr
Match: KAG7015377.1 (Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 293.5 bits (750), Expect = 9.7e-76 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
BLAST of Carg05810 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >KAG6577291.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Carg05810 vs. NCBI nr
Match: XP_038884177.1 (polyadenylate-binding protein 2 isoform X1 [Benincasa hispida]) HSP 1 Score: 250.4 bits (638), Expect = 9.4e-63 Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Carg05810 vs. NCBI nr
Match: XP_038884252.1 (polyadenylate-binding protein 3 isoform X2 [Benincasa hispida]) HSP 1 Score: 250.4 bits (638), Expect = 9.4e-63 Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Carg05810 vs. NCBI nr
Match: KAE8637153.1 (hypothetical protein CSA_004635 [Cucumis sativus]) HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62 Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 2.8e-54 Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 8.3e-54 Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 4.6e-44 Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 6.8e-24 Identity = 57/82 (69.51%), Postives = 62/82 (75.61%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q28165 (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3) HSP 1 Score: 98.6 bits (244), Expect = 6.0e-20 Identity = 59/129 (45.74%), Postives = 76/129 (58.91%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A6J1EN98 (polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435898 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A6J1JCD2 (polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A5D3D298 (Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00070 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62 Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A0A0KWF2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62 Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A1S3BX58 (polyadenylate-binding protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62 Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Carg05810 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55 Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0
BLAST of Carg05810 vs. TAIR 10
Match: AT5G10350.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55 Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0
BLAST of Carg05810 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 211.1 bits (536), Expect = 5.9e-55 Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0
BLAST of Carg05810 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 188.3 bits (477), Expect = 4.1e-48 Identity = 90/107 (84.11%), Postives = 96/107 (89.72%), Query Frame = 0
BLAST of Carg05810 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 ) HSP 1 Score: 178.7 bits (452), Expect = 3.2e-45 Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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