Carg05810 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05810
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	polyadenylate-binding protein 2-like
Location	Carg_Chr16: 4608123 .. 4609236 (-)
RNA-Seq Expression	Carg05810
Synteny	Carg05810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTGAGTCTTTCATTTTTCTCGGTCTTCGCCGAAAAAAAGAAGAAAAAAAAAGTTTCTGGAAGGAGAAACCTTTCTGGTTCATTGGTTTGGTATGAATGTAGAGATATCATGCCTTTATTATTTGCTGCCATGATCCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGTACAGTTTCGAGTGTCTTAATCTTCCATCACCATGAAATACTTGATTTATCTAATTTCTTAATCCTTCAATATCCCATTGCAGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGCTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTATCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTGACACTCTCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCCTTTAGACGACGTTTGAGAATGGTTCTTGTAAATACTTACAGGAAAAAAGTTAAGCCCATTGTGTGAACTGAGCTGGATATGATGCTTGTCTGTGCTGAAGAACTTGGAATTGAACCATACTTAATGTAACATGGGTAAGATTTGTATTTCCCATAAGTTTTCTTTGTTTTCAGTTATATCGGCAAATGTTTGCGGGCAGTTTGCATGCACAGGAAAAAGCTATCAACTAGTACCTACAAAT

mRNA sequence

ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGCTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTATCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTGACACTCTCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCCTTTAGACGACGTTTGAGAATGGTTCTTGTAAATACTTACAGGAAAAAAGTTAAGCCCATTGTGTGAACTGAGCTGGATATGATGCTTGTCTGTGCTGAAGAACTTGGAATTGAACCATACTTAATGTAACATGGGTAAGATTTGTATTTCCCATAAGTTTTCTTTGTTTTCAGTTATATCGGCAAATGTTTGCGGGCAGTTTGCATGCACAGGAAAAAGCTATCAACTAGTACCTACAAAT

Coding sequence (CDS)

ATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCAAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGACAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCGGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTCCCCGTCGTTATAACCCGTACGTGGGTTTTAGGAGACCGTATGCACCACCGTATTTTTATTCACCTTACGGCTACGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAG

Protein sequence

MALYHFMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY

Homology

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BLAST of Carg05810 vs. NCBI nr
Match: KAG7015377.1 (Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.5 bits (750), Expect = 9.7e-76
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MALYHFMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 60
           MALYHFMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV
Sbjct: 1   MALYHFMFKALFQESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 60

Query: 61  EFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFY 120
           EFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFY
Sbjct: 61  EFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFY 120

Query: 121 SPYGYGKMPRFRRSMRYMPYY 142
           SPYGYGKMPRFRRSMRYMPYY
Sbjct: 121 SPYGYGKMPRFRRSMRYMPYY 141

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BLAST of Carg05810 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >KAG6577291.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG
Sbjct: 93  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 152

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 153 RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]

BLAST of Carg05810 vs. NCBI nr
Match: XP_038884177.1 (polyadenylate-binding protein 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.4e-63
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEALLLNESELHG
Sbjct: 93  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 152

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYRPRRYNPY+GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 153 RQLKVLPKRTNVPGMKQYRPRRYNPYMGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]

BLAST of Carg05810 vs. NCBI nr
Match: XP_038884252.1 (polyadenylate-binding protein 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.4e-63
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEALLLNESELHG
Sbjct: 10  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 69

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYRPRRYNPY+GFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 70  RQLKVLPKRTNVPGMKQYRPRRYNPYMGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 129

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BLAST of Carg05810 vs. NCBI nr
Match: KAE8637153.1 (hypothetical protein CSA_004635 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 13  QESKSLCLKVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEAL 72
           +ES S  + VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL
Sbjct: 145 RESSSF-IVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEAL 204

Query: 73  LLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFR 132
           +LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFR
Sbjct: 205 VLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFR 264

Query: 133 RSMRYMPYY 142
           RSMRYMPYY
Sbjct: 265 RSMRYMPYY 272

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BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-54
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKV PKRTNVPGMKQY P R+NP +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMP
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMP 215

[Close]

BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.3e-54
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKVL KRTNVPG+KQ+R RR+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMP
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMP 218

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BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-44
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 14  ESKSLCL-KVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEAL 73
           +S+S+ +  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L
Sbjct: 101 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL 160

Query: 74  LLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPR 133
           +LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG++PR
Sbjct: 161 ILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPR 220

Query: 134 FRRSMRYMPY 141
           FRR MRY PY
Sbjct: 221 FRRPMRYRPY 227

[Close]

BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.8e-24
Identity = 57/82 (69.51%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEADAVQEALLLNESELH 81
           VDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  ALLLN S LH
Sbjct: 62  VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121

Query: 82  GRQLKVLPKRTNVPGMKQYRPR 103
            R LKV PKRTNVPGM + R R
Sbjct: 122 ERPLKVTPKRTNVPGMSRGRGR 143

[Close]

BLAST of Carg05810 vs. ExPASy Swiss-Prot
Match: Q28165 (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 6.0e-20
Identity = 59/129 (45.74%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEADAVQEALLLNESELH 81
           VDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   
Sbjct: 179 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 238

Query: 82  GRQLKVLPKRTNVPGMK---------QYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 141
           GRQ+KV+PKRTN PG+          +YR R  N Y   R  +   +   P G     R 
Sbjct: 239 GRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSRFYSGFNSRPRGRVYRGRA 298

[Close]

BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A6J1EN98 (polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435898 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG
Sbjct: 93  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 152

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 153 RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]

BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A6J1JCD2 (polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG
Sbjct: 93  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 152

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 153 RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]

BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A5D3D298 (Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00070 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 115 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 174

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 175 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A0A0KWF2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 115 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 174

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 175 RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of Carg05810 vs. ExPASy TrEMBL
Match: A0A1S3BX58 (polyadenylate-binding protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEAL+LNESELHG
Sbjct: 20  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHG 79

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 141
           RQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 80  RQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 139

[Close]

BLAST of Carg05810 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKV PKRTNVPGMKQY P R+NP +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMP
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMP 215

[Close]

BLAST of Carg05810 vs. TAIR 10
Match: AT5G10350.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 7   VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 66

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKV PKRTNVPGMKQY P R+NP +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMP
Sbjct: 67  RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMP 126

[Close]

BLAST of Carg05810 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.1 bits (536), Expect = 5.9e-55
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMP 141
           RQLKVL KRTNVPG+KQ+R RR+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMP
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMP 218

[Close]

BLAST of Carg05810 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-48
Identity = 90/107 (84.11%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 22  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHG 81
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E +AVQEAL LNESELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKVLPKRTNVPGMKQYRPRRYNPYVG--FRRPYAPPYFYSPYGYG 127
           RQLKV PKRTNVPGMKQY P R+NP +G  FRRP+ PPYFYSPYGYG
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of Carg05810 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-45
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 14  ESKSLCL-KVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEAL 73
           +S+S+ +  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L
Sbjct: 101 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL 160

Query: 74  LLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPR 133
           +LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG++PR
Sbjct: 161 ILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPR 220

Query: 134 FRRSMRYMPY 141
           FRR MRY PY
Sbjct: 221 FRRPMRYRPY 227

The following BLAST results are available for this feature:

BLAST of Carg05810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015377.1	9.7e-76	100.00	Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022929268.1	1.5e-63	100.00	polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyad...	[more]
XP_038884177.1	9.4e-63	98.33	polyadenylate-binding protein 2 isoform X1 [Benincasa hispida]	[more]
XP_038884252.1	9.4e-63	98.33	polyadenylate-binding protein 3 isoform X2 [Benincasa hispida]	[more]
KAE8637153.1	3.6e-62	93.02	hypothetical protein CSA_004635 [Cucumis sativus]	[more]

BLAST of Carg05810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX90	2.8e-54	84.30	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q9FJN9	8.3e-54	83.47	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q93VI4	4.6e-44	70.77	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	6.8e-24	69.51	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q28165	6.0e-20	45.74	Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3	[more]

BLAST of Carg05810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN98	7.0e-64	100.00	polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A6J1JCD2	7.0e-64	100.00	polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120...	[more]
A0A5D3D298	3.9e-62	97.50	Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KWF2	3.9e-62	97.50	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV...	[more]
A0A1S3BX58	3.9e-62	97.50	polyadenylate-binding protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034944...	[more]

BLAST of Carg05810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10350.1	2.0e-55	84.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.3	2.0e-55	84.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	5.9e-55	83.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	4.1e-48	84.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	3.2e-45	70.77	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..87 e-value: 8.1E-14 score: 61.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..85 e-value: 6.0E-13 score: 48.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..91 score: 12.98672
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..95 e-value: 6.2E-21 score: 76.4
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 20..139
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 20..139
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 22..87 e-value: 5.245E-44 score: 137.037
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05810-RA	Carg05810-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding