Carg05003 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05003
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMADS-box transcription factor 8-like
LocationCarg_Chr08: 966775 .. 974544 (+)
RNA-Seq ExpressionCarg05003
SyntenyCarg05003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATTGGAGGAGGAAAGAAGTTTATCAATGGCCATGGAAACAAAAGAGATGAAAATTCCTCCTACGTCCATAACATAGCAAGAGGAGTTTATAGAGTGACGATGAAGATGGATAAGGATATTGAGAAGTAAGGAGTATTATTCCTTCTTTCTCCAATCTTTACGCCACTAGTCGTCTCTAGATCAAGTAAATACTTTTAGTAAACTCTTACCGAGGATCTATGATCATGAAGGTACGTGTGAGACCAATGTGTGCCTGGTCACAAGCTTATATAAGATTATTTATATGCTAAAATCTTGGCAGATAGTTGAAGAAAGCTCTCCCTAGCACCCTTTTCTAGTTTTCATGGTCCTCATTGTTGGAAGGAAAATTTTAGACAAGCTAATGGGACCATCGAGGATTATAAGCAAAGAAAGAAGGGGTGATTTTCATGATTAATTTTGACGATTATGACAATGTGGATTGAAACTTCGAAGTGACTTTTAGTAATAGCTTGAGGCCACCGTTAGCAAATATTGTCCACTTTGGTCTGTTATGTATCGTTGCCACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCACTTGGGGGCCAGCGTCCTCGCTGGCACACTGCTAGAAGACATTGTCTGCTTTTGCCCGCTACATATCGCCACCAGTCTCATGGTTTTAAAACGTGTCTGTTGGGGAATGGTTTCCACACCTTTGTAAGGAATGCTGCATTCCCCTCTCCAATCGATGTGGGATCTCATAATCCACCCCCCCCCCTCGGGGGCCAGCGTTATCTCTAGCACACTTCCCGATTTCTGGCTATGATATCGTTTGTAACGGCTCAAAGCCACCGCTAGTAGATATTGTCTGCTTTGACCCGTTACGTATCGCCATTAGCTTTAAGGTTTTAAAACGCATCTGTTAGGGAGGGGTTTTCATACCCTTATAAGGAATGTTTCATTCCCTTCTCCAACCGATGTGGGATCTCACAATTCATCCCCTTTGGGGGTCTGTGTTCTCGTTGGCACAATGCTCGATGTCTAGTTTTGATACATTTGTAACGGCCCGAGGCCACTTCTAGCAGATATTTTCCGTTTTAGCCATTGCGTACCACTGTCAGCCTCAAGGTTTTAAGACGCATCTATTGGGAAAAAGTTTCCACACCCTTATGAAGAATGCTTTGTTCCTCTCTCCAACCGATGTGGAATCTCACATTTTCAAGGTTGATTTTGACAAAACTCATGATCTTGTTGACAAAAACTTCGGGAAGAAGGGTTTGGACGAAAATGGAGATCTTCTATTTGAGATTGCATTAGGTCTACAAATTTCTCCATCTATTCTCAACTAAAAGCCTGTGTAAGATTTTTGCTTCTAATGGGGCTTAAGCAAGGGAGCCCTTTCGCCCTTTTTCTTTTTACCTAATGGTGGATGTTTGTAGTAGTAGGTTAGTGTCGCTTTGAGAGGAGAAGGGATTCAAGGTGAGAAAAGAGTTAGTTCACTTGCCTCATCTCTTCTTCTATTCAAGATTGGAAAATTCCTCTAGGAACCTTCATCGTTCTTTTTCCTTCGAAGCAAATTCTAGGCTTAAGGTTAATGGGGTAGAAGTTTCATATTTGGCCTTTAATGGTTGGCCTTTAATTGTTGTCCTTCTAAGCTATGTTTTGGGACGTCTTTGGTCGAGTGTAAGGTGGGTCATAGCTTAAAAGGACAACTAACGCCAAATATGAAACTTCTGCCCCCATTAATTTTAAGTATGTTCTGGGGCTCCTTTGGTTGCGTGTGAGGTGGGTCAGTTTCCCTCCTATATTCTGTTGGGTGATACTCAGAGGAGCCAAGTGGAATTTGGAAATGGTTTGCCTTACATGAGAAATGTTTTTTTTTTTCTTTTTTCCCCTAAAGGAAGGCTTACTCTTTACCCTATCAATGTTGAGTGAGATACCCACTTATCTCATCTCTTTTTAGATTGTGGGTTTTACGGAGTAAGAATATTAAGAGAGTGATAAGAAACTTCTTTGTGGAAAAGGGTGAATGATAAGAAACTTCTTTGTGGAAAAGGGTAGATGAGGAGATGGTCCAATCTAGTTAAGTGGAAAAAGTGATGATTATGCATGTGGAGTAAGGAGGCCTCGGGATTGAGAACATGAGATTATATAACAAGACCCTGTTGGCTAAATGGTTGCGATGATTCTAAATAGAGTTCAATGCTTTGTGACACAAAGTTATTGTGAGCATGCATGGCCCACACCCTTTCAAGTGAGTCTAAGTGAGTGACAGATGATGACGCCAAAGGGCCTAATAAAAAGGCCCACACCCTTTCAAGTGAGTGACAGATGATGAAAGGGCCTAATAAAAATCTTTAGAAAGCTGAGTGTCTAAGGTTTCTCTTCCTCTATTAGGGAGGGACTGAGGGACTGAGTGTTTATTATTGGGAAGATTGGTAAGTGGGTAATCAACCCCTTTGTGAATTTTTCATGCGCTTATATTATCTCTGGAGTAAGATTTCATTTTGTGGCTTCTATCTTACCGTTCCCATATCCCTGTTCATTCTCCTTGGGTTTTAAGTGCCACATTTCTACTAAATAGGAATTATAGATGCAGCACGTCTCCTTTCTCTTCTCCTTTATCAACATGCGTTTTGACGAAGGGACCGTGTTTCCTCAAATTCTTCCTCTTGGAGTTCTTTTTTCATATAATGTGTCCTTTCTCCGCCCCAAATCACCTCTACTTTCCACTCTCTTTAGAAGGTTAAAATCTCTATGAATGTTGAATTTTTTAATCTTCTTTTGAGTTTATCCCATAATCCTCATCATTAGTTGTGAGAGACTAGTTTGTTCAATCTGTTTCTCTGGTTTCAATGCTAGTTTTGTTTAGCTTATGTTCGGTGTAGAATTGTGGTTGTTATGCTATGATTGAGGTTATAAGAACATTCCTGTACTTGCCTTATCATCTTACATCTGCCTGTGTTATATGAGTAAGGATTCTTGCTTTTCTTTTGGTCGCCCTTTCTGTATACCCATGACATCTATAAAGGATAGAGTTGAAGATTCTTCGTCTTCTTACTAATATTTATTTAGGATACCATAAAGATCCTCCCCCTGGTGTTCAAAGGATTTTCTTTTTCCAAGTTTGAAGCTTATATAACGGATATGATTGATAAACCAATTGAATGTTCTTATGGCCAGTGGATATAGATGTATTTCTGTATTAAAGAAATGAGGATAACACTTATAACGGTAGTTACGTGCATCATTTTCTTGGAACCAACTTTTTTATGCACTTCCGTAATTGCGATGCAGCTTATTGAATATTATTAAGCGCTACCAAAGCCACTTTGAAGGGAGAAGTCAAAGTCAAAGTCAAAATGAGGTTGATACAAAGGTCAGTGAGCAACTTTTTTAACCTTTTTCTTACAAATATAAACCTCTAATCTTATTTCTGCTGAGTTTTATGCAGGAGCATGAAGAATCTGAAGAGACACTCATGGTGTCATTTGGAAAGCTCCTACAAACTATTCAAAGGCAATTTTCTTTCTATATTTGAACTGGTCGTTTTTAGGTATCACAATTGCTCTATCTTGACTGACGTGTCCTCATTTCCAGTCATGTTGAAGAACCAGATTTCAAAAAGCTCAATGTAAATGATATGGTGCACCTGGAGAATCAACTTGAAGCCTCACTTGACAAAATCAAATCTCAAAGAGTGAGTTCACTTGTTTGGCTAGAATATTCATCTAAGATATTTCCACTTGTTTGGCTAGAATATTCATCTAAGATATTTCCACTTGTTAAGTACACAATACTTTTGGCAGCACCACGTGCGTGTCCTGCGGATGTGGCAGATGAGTTGTTTGTTAAATACTTCAAACTACTCGACAAAGAGGATATTCTTAGTGATTGTGGTGCTAGATTTACACAGAGGTTTTGGACTAGCCTACTCAATGCACTAGGTTCCTCTCCATAGCAAATCACCCACTAGCCTCGTGAAAAAATAAATCCTATGGTCTTTAGTTGCGATGTCACCATCAACCGTAATGAAGTACCTTGCCTTTATGAGAGTAGCACATGCCTTGAATATTGTGGTCAGGAAATGAAAACGCATTCAACTATAATTAGGAACCTATCATTTAGAGATAGCCTCCGATCCGAACAAATTAGATGTGTGGTACTTCCCTACACAAACCCACGGGTGCAAGCGTGGGCACCAGGCAGGCTCACACACCCCATGAGCCTGCATGGTCAAGCTAGTTGGTTGTGCAGGCTAGTTGGTTGTAACCGGCCATCCAGAGGTACATCAACCTCGTAGATCATGCAAAGCATGATAGTCATTATCATCATAGTGTACGCGTCTATACTCATCATAAAAGGGATATGAATTTGGTCCCTATATTTAATCTTAAATCATTCATGCGACACAACCTCAAATATCTTTCACATATTACCCTAACTAACATGCATGCATAAACTTTCATATATTCATCTTCCTAACATACTTACGGGTTGTGTATCAACAAAAAAAAACTTTTCATTTTCATAATGCAATATGGCATCTCATACATGCATATCATCGTAACACAAGATATCATTATACTATATCACATCATCATAACGTATCATGGTATCATAGCATGTTACATCATCATAACGTATCATGGTATCATAGCGCATCACATCATCATAACATCATAGCATATCAGATCATCATAACATATTATAGCATTAACATACATCATATCAACATACATGACACGTGCAGTGGTCACTGAACACGTGTCATCATACATAAGACAAGTCTTCCGACCAAGCCAATAGTAAGGCCACTTACTTGGTTGGCCTAGGCCGAAGTTACCATGACACCTTGATGCTTGATGTTGGCTTAACGCTGCTCTCTGAAATAATTAAACCTAATTTTTCATAAAATAATTTAAACTAGCTAAAAGGTAGTTATCCTAACCTTAAGCACTTTCAAAGAGCTAAAACTAATAGAAAAAAGTCCGAGTATATCAAACCCAGGCCAAATCAACCAAAATGCCAGCCTGAAGAGTGTGTTCTTTGATTGGTTTCAAACCGTTCAAGTGGGATGATGAAATGAAGCAAGAGACCTCCCTTTTATAGTAGAGGTCAAACTTAAGTGATGTGGGACAATTTCCCTTCCTCTTCTTTCAAAGTTAGTGACCGAACAACATACTCTATGTCCTTAAGAGGTAACAAAAGGACACACACGAGGAAGAAGGTGTCCAACTGCTTATCATTTCGTTGGTGACAAGTAGAAAATGGGCTTAACTTGAGACAACTTGGAGAAAGCTGCATGTAAAATTGAATGAAATACTCAAACAAGGGAAGACGACCTTGGACTTCAAGGTAGAAGCACAGTTTAGGTGAGATTGCATATGTGGAATAAACTATGCGACAAGCGTGCACAAAGTGCACAAAAGCCTTAGTGTTGAGGTATGACAGACCCTTTGAAGTGATCAAACAAGTGCACAATGTGGCTTATCATCTGAAACTTCCCAACAAGTTGAAAATTGACCAGGATCAAAACAAGTAAGGTGAGTTCCAACTATGATTAAAAAGTGGTTTGAGAGGAAGATTGAGAAAATCCTTGGCCATTAAACAATTGTCAACGGACTGATTACTTGGTAAAATGGAAAGGCGAAGATGACAGAGAGCTTTCTTGGGATAGAGATGTGACACTGACAATTTGAAGACTAGATATGAGTGCTAGTTAAGGATAGATCCAATGAAGGCATCGACAAGCTCAAGGGAAGGAGGTTTGTTAGGAGATCTCGATCTTGAAACATGCGAGATGGGACTTACATGAGTTAGTGACACGGTGTGTGGGGCAACACACTAAAGAGCAAAAGACAAGGCAGACAAGTACACAAAGGTGGTAAGGGACTAAACATACCTTGGATGTTGATGGGTGGTCGGCAATCCACGATTGTGAAGGGGCATGGTTACCATCCTGCTTAGCACACAATCATTGTTGGCGAGTAGGCAGGAAGACATGCACGACAAAACAAGGCAAAAGCAAGAAGACATGGCAAACATAAAGTACGAAACTTCCATGAGCTGACAGCAATATGACATGAACACATGGTACAAAACATGCGTGCACACAAAGAATCTCATAGGTATGCGCATACGCACATCCAGATGCATAGGCTCACATGCTTAAGCCTAACGTTACGTGCAAGGAGGATTGAACGGCAATCCGGCAAGCAAAGCACTATTAATGGGCTCATTAATAGGGGTAGACCGTTCACAAAGAGGATTAACAAAGGCATCTGATTCCCCAAGTTTTTGGAGTAATAAAGACAATTCCTCTTTTTCATAACTCAAGCACGCATAATTCCCAACCTTTATGGAGATTTTCTCTATCCTGTCCTCATCTTTACATGGTCATATGCTTTGAGGTATCTGATCTTTGTGTTCAAGCCATTCACAAAGTTTCTTTCCTGCTCTAAGTTAGGTACGTTTGGTAATAACGGTTCCCTAGATGAAAAACTCAAAAAGGGAAGATACCTAAAATGGTTCTACCCTGAAAAATGCTTGTACATGGTTCCTTCAAGTTCAGATAAGTTCTTCTGTACCCATCTAAATCATGCTCCTGCTTTCATAGATATCAGGGCTCAAATATAACATTTTACAGCCAACTCCTTCATAAATGGGTGTGCAAAAGAAGAAAAAGAAAAAAGAAAGAACTCTACATTAATTACAGAATGAAAACAGTTCTCTTTTCTCCATCACTGTCAAAACGCCTGACAATCACATTGATATTAGTGGTGATTGTAAAGGAGGAAGGGGGTGAGAACTAGAAACCACCCAATTCTCAATTTTGTACGGAAACATGCATCCAACGAAGCCCTCCACTACATTTGATCAGCTTCTCAAGCTTGAAGAGGAGTACTAACTACCTGATCCTGTGTTAACTGACTCTTAAGGCTGCACTTTTCTTCTGAGCAGAAGCTCAAAGCATTCTATAACTAACTACTACTTGATCCTCAAGTGTATTGAATTGACATATAGTTCAGTGGAAATTATAGACTTCTCCATACATGAAATTGAAATCAGTTGGCACATGCTGTAGTATCAGTTACTAAGAAACTCCTAAAAAATAATTTCAGAAAAATAGACGAATATGTAAATATAGGAAGATACACTACCTGATTTTCCAATATGTGGAGAGGTTCCAATGAATGCTTACTTATGCACTCTTGTTCGGGAAGTAAGGGGAATTGTATGAGATTATGCTTCTGCTTTTGCTTCATCGTTCTGATTCTAGATGAACAGGGGGATAAAATCCTGATACTAATGATGATTTTCCAGTGAGGAAGCTAATGTTACATTGACTAGCTATCATATTAGCGGAAAAAAAAAATTGTAATAGCTATCTTTTTACTTGCAGGTTGAGGCAATGATGGAAAATAGCAGTTGGATAGACAACATGGATATGGCTATCGCCATGGTCGACAGCCAACTTTAATTAGTGAAGTGCCTCGAACAACAATGTGGTTGATAATGTAGTCCCAAATAAAATAAAGAGAAGCTGCACAATTGTATGAGTTCCTAACACCCTGCTAACCTGCAAAAGCAAATCTGCATACTATGTGACATCTGAATATACATATAATGGTTCTAGCATAATATCAGGTAAAATGACCATGCAGCAGCAAACACTTACTTGATGCTGCATAATTAAATTTTATCCATTAATGTTTACAATTTTCTCTCTAAATTGATTCCATAAAACT

mRNA sequence

ATGCTCATTGGAGGAGGAAAGAAGTTTATCAATGGCCATGGAAACAAAAGAGATGAAAATTCCTCCTACGTCCATAACATAGCAAGAGGAGTTTATAGAGTGACGATGAAGATGGATAAGGATATTGAGAACGCTACCAAAGCCACTTTGAAGGGAGAAGTCAAAGTCAAAGTCAAAATGAGGTTGATACAAAGGAGCATGAAGAATCTGAAGAGACACTCATGGTGTCATTTGGAAAGCTCCTACAAACTATTCAAAGGCAATTTTCTTTCTATATTTGAACTGGTCGTTTTTAGTCATGTTGAAGAACCAGATTTCAAAAAGCTCAATGTAAATGATATGGTGCACCTGGAGAATCAACTTGAAGCCTCACTTGACAAAATCAAATCTCAAAGAGTTGAGGCAATGATGGAAAATAGCAGTTGGATAGACAACATGGATATGGCTATCGCCATGGTCGACAGCCAACTTTAATTAGTGAAGTGCCTCGAACAACAATGTGGTTGATAATGTAGTCCCAAATAAAATAAAGAGAAGCTGCACAATTGTATGAGTTCCTAACACCCTGCTAACCTGCAAAAGCAAATCTGCATACTATGTGACATCTGAATATACATATAATGGTTCTAGCATAATATCAGGTAAAATGACCATGCAGCAGCAAACACTTACTTGATGCTGCATAATTAAATTTTATCCATTAATGTTTACAATTTTCTCTCTAAATTGATTCCATAAAACT

Coding sequence (CDS)

ATGCTCATTGGAGGAGGAAAGAAGTTTATCAATGGCCATGGAAACAAAAGAGATGAAAATTCCTCCTACGTCCATAACATAGCAAGAGGAGTTTATAGAGTGACGATGAAGATGGATAAGGATATTGAGAACGCTACCAAAGCCACTTTGAAGGGAGAAGTCAAAGTCAAAGTCAAAATGAGGTTGATACAAAGGAGCATGAAGAATCTGAAGAGACACTCATGGTGTCATTTGGAAAGCTCCTACAAACTATTCAAAGGCAATTTTCTTTCTATATTTGAACTGGTCGTTTTTAGTCATGTTGAAGAACCAGATTTCAAAAAGCTCAATGTAAATGATATGGTGCACCTGGAGAATCAACTTGAAGCCTCACTTGACAAAATCAAATCTCAAAGAGTTGAGGCAATGATGGAAAATAGCAGTTGGATAGACAACATGGATATGGCTATCGCCATGGTCGACAGCCAACTTTAA

Protein sequence

MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Homology
[Close]
BLAST of Carg05003 vs. NCBI nr
Match: KAG7025373.1 (hypothetical protein SDJN02_11868, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 

Query: 1   MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKM 60
           MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKM
Sbjct: 1   MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKM 60

Query: 61  RLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQ 120
           RLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQ
Sbjct: 61  RLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQ 120

Query: 121 LEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           LEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Sbjct: 121 LEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 157

[Close]
BLAST of Carg05003 vs. NCBI nr
Match: KAG6592962.1 (hypothetical protein SDJN03_12438, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 6.8e-46
Identity = 108/157 (68.79%), Postives = 121/157 (77.07%), Query Frame = 0 

Query: 1   MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKM 60
           MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIEN      + +   + + 
Sbjct: 1   MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENLLNIIKRYQSHFEGRS 60

Query: 61  RLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQ 120
           +   ++  + K H     E S +    +F  + +  + SHVEEPDFKKLNVNDMVHLENQ
Sbjct: 61  QSQSQNEVDTKEH-----EESEETLMVSFGKLLQ-TIQSHVEEPDFKKLNVNDMVHLENQ 120

Query: 121 LEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           LEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Sbjct: 121 LEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 151

[Close]
BLAST of Carg05003 vs. NCBI nr
Match: XP_023514206.1 (MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Sbjct: 111 SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 169

[Close]
BLAST of Carg05003 vs. NCBI nr
Match: XP_022959860.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Sbjct: 111 SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 169

[Close]
BLAST of Carg05003 vs. NCBI nr
Match: XP_023004227.1 (MADS-box protein 04g005320-like [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID MDMAIAMVDSQL
Sbjct: 109 SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDKMDMAIAMVDSQL 167

[Close]
BLAST of Carg05003 vs. ExPASy TrEMBL
Match: A0A6J1H7I9 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111460798 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Sbjct: 111 SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 169

[Close]
BLAST of Carg05003 vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.7e-22
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL 158
           SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID MDMAIAMVDSQL
Sbjct: 109 SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDKMDMAIAMVDSQL 167

[Close]
BLAST of Carg05003 vs. ExPASy TrEMBL
Match: A0A6J1DPA0 (MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID 145
           S VEEPDFKKLNV +M+ LENQLEA+LDKIK QR+EAMMEN  W D
Sbjct: 153 SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRIEAMMENDCWTD 198

[Close]
BLAST of Carg05003 vs. ExPASy TrEMBL
Match: A0A0A0KFD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095280 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 38  MDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVV 97
           +D D++  +++ +  + K  V    I  S+K L +                        +
Sbjct: 15  IDNDLQGTSESLIDNDAKDHVSDETILVSLKKLLQ-----------------------TI 74

Query: 98  FSHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSS-WIDNMDMAIAMVDS 156
            S VEEP+FKKL++  MV LENQLE++LDKIKSQR+EAM+EN   W  +MDMA+ M++S
Sbjct: 75  QSQVEEPNFKKLDITQMVQLENQLESTLDKIKSQRIEAMIENDDCWTYDMDMAMGMINS 110

[Close]
BLAST of Carg05003 vs. ExPASy TrEMBL
Match: A0A1S3CCC5 (MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 99  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSS-WIDNMDMAIAMVDS 156
           S VEEP+FKKL++  MV LENQLE +LDKIKSQR+EAM+EN   W  +M++A+ M++S
Sbjct: 128 SQVEEPNFKKLDITQMVQLENQLEGTLDKIKSQRIEAMIENDDCWTYDMEIAMGMINS 185

The following BLAST results are available for this feature:
BLAST of Carg05003 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025373.13.2e-80100.00hypothetical protein SDJN02_11868, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6592962.16.8e-4668.79hypothetical protein SDJN03_12438, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023514206.12.4e-22100.00MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo][more]
XP_022959860.12.4e-22100.00truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata][more]
XP_023004227.11.2e-2198.31MADS-box protein 04g005320-like [Cucurbita maxima][more]
BLAST of Carg05003 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05003 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H7I91.1e-22100.00truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1KPU75.7e-2298.31MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4... [more]
A0A6J1DPA01.1e-0976.09MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A0A0KFD84.2e-0937.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095280 PE=4 SV=1[more]
A0A1S3CCC59.4e-0960.34MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=... [more]
BLAST of Carg05003 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05003-RACarg05003-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding