Carg04987 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04987
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 858088 .. 859760 (+)
RNA-Seq ExpressionCarg04987
SyntenyCarg04987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACAGTATGTTTTATGCAATGAGTGAAGAGATTTATCTCATCTCTTTCCACACAGTACTTCTGCTGCAAAGTTTCAGATTCTTTGGTAATCCGCTGGCTTGGGTGGAATAAGCTAAGGCACATTGAAGACTGGATGTTGTAATCACTAACTGGTTGGAGTCTGAAAGGAAAGGTGAAGATGTTGTTGTGGTCCAACATCGTAAAGGCTATTATGTGGTTGATTTCAAAAGAAAGAAATGCTAGAATTTTTAAAGATATGTACAATCTTTTGCTCACTTTTGTGATCTTGTACAGCTCATGGCCTCTAATTAAAGTAGCCAACACAAATCTTTCGGTAACTACACTACTTTCCTCATCAACTTAGATTGGAAGGTGTTTCTGTAAGCTCTAGCCTTCGGGAAACGGACTTCTTGGCCCTTGGCCTGTTAGGTGTTTCTCTTTTGTTCTTTCTTCTTGAATGAAACACTCATCTCTCATCAACAAACAAAATAAATAAAGGTTTTTCTAGTGCACCGTTGATTCCTTTCAACCCCGAAACAGATAGTAGAGTTTCTTAGATAGAAACTAGTCAAAGAGTTTTGACAGTCTTGGCATTCAGAAGTTCTATTACAAATTTTTTGATGAGATCTCCATCCCACAGTTCCAGAATCATATGTCTATCAGTTCAATTTCATGTTCACTAAATTCATGCTTTGAACGTTTTCCAAATGTGAAACATGTGATGAGAGTACCAAAAGTATAGAGTTGGGGGATTGAGTCTGGTTTGTGACTATTTTCCAGGCATTTGTAACTAAAGATTCTTTGAATTGCCCTTTAGACCTTATTATTTTCTATTTGAGCCTCTTTTGTATATTTAGTTCAAGTTGTGGTTTGGCTTCTATGATTGGACCGCAGTTCATAGGCGCTTTAGTATTCTTTTCCAAGTTACCAATAGGTCACACATAATGTTAGGCTTAAGGACAATGACCAGATTATAGAATTTTGCACACCTGATAGCTGAACTACATTTAAACAGAACTAAGGGATATATTCGATTCGAATAGTGAAACTAAAATTGAACATCAGATGGGGAAAATGCAGCTTAAAAAACCGTTCTAGTTATATGGTATTGCTATCAGATGTATGTCAATGAACTATGCAATTTCAAAAGCAATACTCATTTGCCAAGGGTATAAGTTCACACAACAGATTACAAAGTTAACAAACTGGGTTTGCAATCCTAACCAGCCTTTTAAACAATAAACAATGAAAACTACAAGTGTAAAAAAAAACAAAAATAAGTTGTGTAATATAGAACAATAATAGTAGTTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA

mRNA sequence

ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACATTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA

Coding sequence (CDS)

ATGGCATCAATACTTTTGACAAGTTGCAAAGGAGATTTCCTCGCCTTCAGGTCTCCCCAAACATTATCTTTGAAGCAAATGGTAAAGGTGAAGTATAATACCTCCGCACACTGCTCCTCGATCTCATGTTTGAGTTTCAAAACGTATTCACTACTCACGTCCATGTTATTCAAAGCTGTTGCGATCTCCGTCCCCGTCTTCTGTACGCCAACACCACCTAAGAATAGTTTCGCACCTAAATTTGGTTCTCGCATTTTCTGCTGTAATGCCTCTTGGTATTCGTTGCTCAATAGACTACTAGCACCACTCAGAACTGCAATCAATGAACTGATATTCGAAGTAGATATTGCACGTCTTAAGCAACTCTGA

Protein sequence

MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAVAISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLKQL
Homology
[Close]
BLAST of Carg04987 vs. NCBI nr
Match: KAG7025358.1 (hypothetical protein SDJN02_11853, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 4.9e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV 60
           MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV
Sbjct: 1   MASILLTSCKGDFLAFRSPQTLSLKQMVKVKYNTSAHCSSISCLSFKTYSLLTSMLFKAV 60

Query: 61  AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK 120
           AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK
Sbjct: 61  AISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEVDIARLK 120

Query: 121 QL 123
           QL
Sbjct: 121 QL 122

[Close]
BLAST of Carg04987 vs. ExPASy TrEMBL
Match: A0A0A9QHZ7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 55  MLFKAVAISVPVFCTPTPPKNSFAPKFGSRIFCCNASWYSLLNRLLAPLRTAINELIFEV 114
           MLFKAVAIS PVF TPTPP+ SFAPKFGSRI  C+ASWYSLL RL+ P  TA  E I  V
Sbjct: 1   MLFKAVAISSPVFWTPTPPRKSFAPKFGSRILHCSASWYSLLRRLVDPPSTARTEFILAV 60

Query: 115 DIARLKQL 123
           D AR +QL
Sbjct: 61  DAARWQQL 68

The following BLAST results are available for this feature:
BLAST of Carg04987 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025358.14.9e-60100.00hypothetical protein SDJN02_11853, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04987 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04987 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9QHZ71.1e-1570.59Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of Carg04987 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04987-RACarg04987-RAmRNA