Carg04963 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04963
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFiber protein fb11
LocationCarg_Chr08: 715317 .. 718936 (+)
RNA-Seq ExpressionCarg04963
SyntenyCarg04963
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTACTCTTTCCTGTTTAAAAGCCCTAAGTTTTGTTCAATTTTTTCTATTTTCTTTTGATCGATGGGATTAAATGGTATACTTGTTTTATTTTTCGCTCAGATCTATCTATGGGGAACAGCATATATTTAAATGTTTTTTTTTTTTTTGGGAATTCTGTATAATCTAGGATCCGAAGAAACAATCACGATTGCAAACTCCTTATTTGACTAAATAGATTTTCGTATTTGAATCCTTTTGGTCGGATGCAGTTTTGCCAGTAAATAATTTGATTCTATGTTGGTATTTATTGGTTTAAACACATATAAGTGTTCGAGATTGGAGTTTTAAACTTCCATTCAAGCTGTGGCAATGAACTTCTGCAATGTGTTTCAATTCCTGGTTTTTGAGGCGTCTCTATTTTCATCCAAGCATGCTAACTAAGCGAGGTTGGAACTTGATCAAGATTCCTAGTAGTTTAGTTATTAAAGTTCTAAGAGGGAAGCATTGTAAGAATGGAAAACTTATCCTCGAGTAATGGTGGTTGTAGGTTAACCATTCCCACATCTGCAAAGTGTATTTTGGGGGAGAACTTTTAAAGAAGAGGATTATATTGAAATTGGGAATTAAATGTTAGTTGACATGGCCTCTAACCATTGGCTTTCTAGTGCTGTTAATGCAATTTTTTCCTTTGCCCCTCCTGGCTAGTGTTTTGGAGGGCATGAAGTTAGGACTTAAGCTAGAGGCACAAAAAAGGTGAGAGCTTTTGCGAGGTGAAACCACAATTTGTGTATAAGATCCCTCAAGTATGAGATAGGGAAAATTAAGGATTAACTATTAAAGAAAAACAACAGTTCACGTACAAAGATTACACAAAATCTTACAAATAATAAAGTTCAAAATTATGTTGCAGATACCCTAAAATGACAACCGGTCATCACTAAATAGGTCCGTATCTTCATTTTTCCCAATAACTAGTCCTATGTGCTTCCTCACCTTTTGACAAGACTCATCAAATGTTGGAAAAGGGTGGAAAAGTACAAGTCCTTGGAAAGTAAAAAAAACAAGAGGGAGAAGAGGAGATATGAGTAAGAAATAGAGTAAAATAGATGCAATGTTTACATTTACAATACTTCGAAGCAAATCTGGAAGAGGGATGTTAAGATTACTAAAGCTGAAATGTAAAATGTGTTTAAGAAAAGGTTAAATTCAACAACCATGATGAAAAAGAAAGTAGAGAGGAGGAGATGTAAGATAGAAATAGAGCAAAATGGATGCAATTTTTACATTTAAAATAATTTGGTTTAGTTTTACCATTTTGAAGTTCAGGGGTTCGTTTTTTTTGTTCATTTCTTTAGAGTTTGAGGGTAACTTTTACACTTGAAAGTTTAGAGGTGCAATTGTTACAACCACCATACTTTGGAGGTGGTTTCTTCCACTTGCCCTTAAGTTTACTATTCTCTTATCCTTATTTGTTAAGGAATTGCCCTGTACTTTCTTCAGACTTCTCAAACTACCCTCTAGAATGGCTGGTGGAACACATCATGTCACTACATCAGAAACTACACATTCCACAGTTTTTGCAATGTCTGTCTCGCTTTAAGCACATTAGAAACAACCATTTATCTTTTCCTCGAAAATAATCTGTTGGCTAATATTCGACTTTTCGCCTCCCCCTCCCCCCCCACACACACACCGTCTCCTCATCTTCCATTTCGGCTCTCAAATCTTCACTCTTGTACCCGACTCATCTATCAGACTAACACAAGAACTCCCCCTCATTAACTTCCTGTAACTACTCCTTTCCTCCTAATACACACACACACATTGGTAAGTGTTTAGGCCTGCCTACTGCATATGGTTGTTAAGGAAATTTATAGGATATGAAGTCCTAGGTAGGTAACTACTGTAGCATGCACTCATTCCTTCTTACCACTTTTCTATTTACATTGGTCCTTATTTGACCTCTAGGTCAACCCGTAGTAATTCCTTATCGACTCTTTTTAACTCCTCCTTGACTCTCTCTATACGAGCTTCCAAACAATTCTCTCTCCGCATCCTCCAAATTAGTCTTCTTGGTCTGATCGTCAATCTTCAATGCTGCCTCCTTGGAAAGTGAACTGTGCTCCTCTAACACTTCTGTGACTAACAACCTATCAGAGTTTGGAGCCACTACCTGCACAAAGTACACCATCGCCGCTAGTGACCAGTGGTGAAATGAAATACGATAACAAATTTGCAACCCCAATGACAAGAAATAACACTAAAAGATAATGCTGCAGAATCAAAGAAAACTTACGAAGGTCCTTTCGAGATTACTCTCTCTTCCCCATTACCATCAACCCTGACAACTTCTTAAGTAATTACAAATATGCCACTGTTAAGTGTCAATATCCCTGATTTTATTTCCACTATTTCCCTACAGGTATTCTAACATATGGAGGGAGAAACCACCATCCCTGTCATTTAAAATTATCTCTGGAAACTTCACTATTTACATTGATATCATTTAATTCACCACCAGCTTCCTCTCCTAATCCGTTCTTCCACTCCAAGATCTCTTCTGACTTTTCACCTTCCTGGATCCCATTCTATTTATTTTCAAAGATATTACTGATTCATCTAGCATTTTCACTCCCAAAGCGCTAAACATCATTAAATTTTTATACTGAATTTGGCTTGTCACTACTCGTGGATCATGTATCTACTTTTTGGTTTGATTAGTACCATATGGAACATATGTGACATTTTGGTTTCTAACATGTTATAACCCTTGTAGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTAAGTTCAAAATCTTCACAAAGTGTAAAATGAATTGTCTGCATGCAACAAGTCTGTATTTTTGTAGTTGTATAATTTTCAGCTTTTTGGTAAGTGAGATTCCTTGATCAACACAATTTCCTTCTAAAAGAAGTTCATTTCTTTTTGCCTTTTAGTGCCTCAACATTGGTGCTACTAAATTATTCATTTACTTCAACATTTATTGTAAATTTATATATATTGTCGACTTTGCAGGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGATCGATCTCAGCAACACAAGAAGGATTGTTCTTAATGGATCATTGTTTTTTTTTCTTAATCAAATTTCCTGCTCTTCTGCCGTAAAATAAGCCCTCTACAATCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACACAAGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCATAAATTGAGCCCTACAAACTCCTTTGATTGGTTTCCTACCATTCGTCTCCAAATATTTATACTGTTACAGGACTTCATGATGAGACGATTATGAACCGATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTACCAGGTTTACCATTTTTCTTTAATGATAATTGGATCCAAGTTCCGTTTGAT

mRNA sequence

AGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGATCGATCTCAGCAACACAAGAAGGATTGTTCTTAATGGATCATTGTTTTTTTTTCTTAATCAAATTTCCTGCTCTTCTGCCGTAAAATAAGCCCTCTACAATCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACACAAGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCATAAATTGAGCCCTACAAACTCCTTTGATTGGTTTCCTACCATTCGTCTCCAAATATTTATACTGTTACAGGACTTCATGATGAGACGATTATGAACCGATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTACCAGGTTTACCATTTTTCTTTAATGATAATTGGATCCAAGTTCCGTTTGAT

Coding sequence (CDS)

ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAG

Protein sequence

MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMTGKK
Homology
[Close]
BLAST of Carg04963 vs. NCBI nr
Match: XP_022959928.1 (uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_023005103.1 uncharacterized protein LOC111498190 [Cucurbita maxima] >XP_023513591.1 uncharacterized protein LOC111778152 [Cucurbita pepo subsp. pepo] >KAG7025334.1 hypothetical protein SDJN02_11829 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. NCBI nr
Match: XP_008459762.1 (PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber protein fb11 [Cucumis melo subsp. melo])

HSP 1 Score: 117.1 bits (292), Expect = 5.6e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. NCBI nr
Match: XP_022958795.1 (uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 uncharacterized protein LOC111806568 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 7.3e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. NCBI nr
Match: XP_027115476.1 (uncharacterized protein LOC113733330 [Coffea arabica] >XP_027161062.1 uncharacterized protein LOC113762025 [Coffea eugenioides] >CDP08658.1 unnamed protein product [Coffea canephora])

HSP 1 Score: 116.7 bits (291), Expect = 7.3e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDSFE+SKQVPQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. NCBI nr
Match: XP_023006679.1 (uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharacterized protein LOC111499335 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGG+GLFLPAVVRPILDS+EASKQ PQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGVGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. ExPASy TrEMBL
Match: A0A6J1H9H3 (uncharacterized protein LOC111460833 OS=Cucurbita moschata OX=3662 GN=LOC111460833 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. ExPASy TrEMBL
Match: A0A6J1L1A7 (uncharacterized protein LOC111498190 OS=Cucurbita maxima OX=3661 GN=LOC111498190 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. ExPASy TrEMBL
Match: E5GCM8 (Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. ExPASy TrEMBL
Match: A0A1S3CAX6 (uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. ExPASy TrEMBL
Match: A0A068UM29 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDSFE+SKQVPQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

[Close]
BLAST of Carg04963 vs. TAIR 10
Match: AT2G46540.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKL+MFV QEPVV ASC+IGG+GLFLPAVVRPILDS EASKQV  P L+DV+A +T
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

The following BLAST results are available for this feature:
BLAST of Carg04963 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959928.11.7e-24100.00uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 unchar... [more]
XP_008459762.15.6e-2395.24PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber... [more]
XP_022958795.17.3e-2393.65uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 unchar... [more]
XP_027115476.17.3e-2393.65uncharacterized protein LOC113733330 [Coffea arabica] >XP_027161062.1 uncharacte... [more]
XP_023006679.19.5e-2392.06uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharac... [more]
BLAST of Carg04963 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04963 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H9H38.4e-25100.00uncharacterized protein LOC111460833 OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
A0A6J1L1A78.4e-25100.00uncharacterized protein LOC111498190 OS=Cucurbita maxima OX=3661 GN=LOC111498190... [more]
E5GCM82.7e-2395.24Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A1S3CAX62.7e-2395.24uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=... [more]
A0A068UM293.5e-2393.65Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 ... [more]
BLAST of Carg04963 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46540.12.2e-2279.37unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36026OS05G0542100 PROTEINcoord: 1..63
NoneNo IPR availablePANTHERPTHR36026:SF5SUBFAMILY NOT NAMEDcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04963-RACarg04963-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane