Carg04720 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04720
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	UPF0426 protein At1g28150, chloroplastic
Location	Carg_Chr13: 9643747 .. 9646505 (-)
RNA-Seq Expression	Carg04720
Synteny	Carg04720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGAGTGTTTCTGGAAATGTTTGGCCAATTGCAAGAAGCAAACAAGGGGGAGTTTTAAGCCATTAACCCATTTCTAACGCCAATATCTTCATCCTCTTCTTCGATCCGAAGCAGCTCCATTTGCGTCATCGGAGACTCTCATCCATGGCCGGTCTTCTTCTCCACTCCTCTTCAACTGCCAGCGTTCTGGTATGCCCATCTCTAATTTTTAATTTCTTTAATCGCTTCGTCTTCCTCTTCTTCGATGTTGCTGATTTTCCTGTTTGATTCTATTGAAAGCTTGGAGGAATGGGGAAATTTAGGGAAGGGAATCGTCATTCGATTTTTACGCCCAAGAAACCTATGCGTGCTAACTGCCTTCGTCTCGGCTGCAGTAATTCAACGAATGCCATCTGCGCTTTCCTTTTCAATCCTTTGGAGGATCCTGTTGTCAAAGAAGCTCTTAAGGTATTCTATTAACTCTTCCATGAAAAACCCTTCCTCGGTTTTGGCTGTTGTTCTACTTGGATTAAGATCATTCTTGCTTGCTGAGTGTGTGCAAAATATGGAGGGGTTCATTAATTTCCCTGTGTATTCTCATAGCACTTAAAACACAGATTATCTTTGATAATTGCTTGCCTCTTCGAGTAGAGCATAAACATGGTCACATTTCTACAAGTGCGAGTTAAGATGGATCTATGATTTTTCCAGTCATGTCATTGCTGAAACTATTAGAACTATGTAGGGCCGTAGGGAATCTATTTACTGGTAAAAGAAAGTCAATTTAACCATTTAATATCTCTGATGAACACGACTGCATAACATAAGTATTCTTGAACCAACTCTTATGATGTGCAAATAATAATCTTGAACTAACTTCAAAGGAGAAAGAAAATGTCTTCATGATCTGTAAGGTTGAGAAAAATGTGGCATGATGTTCATAGCTTGAAAACCTCTAGTAATAGTGATGTTCATAGCTTAAAAGCCTCTAGTAATAGAGAACTTCAATCACATTCCTCGCTTTTAGGAGGTGTAAAGCTCTTTGTATTGTTTGGGTTTGGCGGGTTTGGGAAAACTTTTGTGAGATCCTACATTGATTGAGGAGGAGAACGAAACATTCTTTATAGGTGTAGAAACCTCTCCCTAACAGACGTATTCTAAAAACCTTGAGGGGAAGTCTGAAAGGAAAAGCCCAAAGAGGACAATAGCTGGTAGTTGGTAGGTTTTGGCTGTTACAAATGGTATTAGAGACAAACATCGGGTGATGTGCCAGAGAGGAGGCTGAGCCCTGAAGGGGGTGGATATGAGGTGGTGTGCCAACAATGATGCTGTGCCCCGAAAGAGGTGGATTAGGGGGTCTCGCATCAATTAGAGAAGGGAACGAGTGCCAGAGAGGAGGCTGAGCCCTGAAGGGGGTGGACATGAGGTGGTGTGCCAACAATGATGCTGTGCCCCGAAGAAGGTGGATTAGGGGGTCTCGCATCAATTAGAGAAGGGAACGAGTGCCAGCAAGGACGCTAGGCCTCGAAAGGGGGTGGATTGTAAGATCCCACATCAGTTGGGGAGGAGAACGAAACATTCTCTAGAAGGGTGTGGGTCTATCAGACGCGTTTTAAAAACCTCGAGGGGAAGCTCAAAGGGGACAATATCTGCTAGCGGTAGGCTTGGGCAGTTATAAATTCAGCTGATTTTTGCTTTGGTGTTTGGTATGACTGAAATTTTCTGGAACCTTATTGGCATCTCATCACTGAGATCCGTCGTCTCCACCATGGTGTGTTGGCTTTCACACCATGATGTTGCTGAACTGACTATTTGGCACCAGGCTTATCTGAAATATAATGTTGGTTAATTTCCAAATTCCTTACTGCTATGGACAGTGCTGAATACATTTCCATGGAATTGAGGCAGTCCCAATCAGTTGTTGCGACTGAATGTTTGAGAGCTTGTTATTGTTTTTTCATCATTTATAAAGTAGACAAGCTCTGCCAGTTCAAATTCTTACTGTTGCATTAGGATTCTTTGTTAGTTCCTTCTGGACTATATAGATTAAGATGATGAGGCTCGTCAGCTGGGATATGTGAATTCCTTAGATGAAAATACTCACTCTACTATCAAATGCTTCATATAATGTGAAAGTAATTTCAATCGTTGTAGGAGCCGGTTGCGTTCGCAGGTGGGCTATTTGCTGGGCTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACGGTGGAATCTGCTGGAATCACAGAAGAAGTTGACACCCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATCGAGATTGAATGATCCCATGAATATAAACTGGAAAAGTGGGGATAAAAGGGTATCTGATCTGATTCGTCTCAATATTACTATGGCTCCCTTGATTTAGAATAAGAAATGAAATGGTTTAGGAGTTACCCCCTTTTCATAATCCAAATACTCTACGACTTCCTCTAAAAATACTTCTCGATTCAGAAGGAAACGCATCATTAGTGTTTACATATTTTTGCAAAGTACTTTTACACAAACATACGGCTGCACATACTAGTTTTTATGTGAATTTTTTATGGAGGAAGCAAATGCCCCTAGAACACAAGGAGTTGGCTAGTAAAACATCAAGTATAGGACCATCAGTGATTTGGGTCCTTCGGTTCACATAATCGAGTTCAAGCCTTAAAAAACTTCCAAGTTCTTGCATCTTTTGTCCACGTTTTGAGAAACAATTCTTTGCATTTTAAGCTAATCAATCCTGTA

mRNA sequence

AAGTGAGTGTTTCTGGAAATGTTTGGCCAATTGCAAGAAGCAAACAAGGGGGAGTTTTAAGCCATTAACCCATTTCTAACGCCAATATCTTCATCCTCTTCTTCGATCCGAAGCAGCTCCATTTGCGTCATCGGAGACTCTCATCCATGGCCGGTCTTCTTCTCCACTCCTCTTCAACTGCCAGCGTTCTGCTTGGAGGAATGGGGAAATTTAGGGAAGGGAATCGTCATTCGATTTTTACGCCCAAGAAACCTATGCGTGCTAACTGCCTTCGTCTCGGCTGCAGTAATTCAACGAATGCCATCTGCGCTTTCCTTTTCAATCCTTTGGAGGATCCTGTTGTCAAAGAAGCTCTTAAGGAGCCGGTTGCGTTCGCAGGTGGGCTATTTGCTGGGCTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACGGTGGAATCTGCTGGAATCACAGAAGAAGTTGACACCCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATCGAGATTGAATGATCCCATGAATATAAACTGGAAAAGTGGGGATAAAAGGGTATCTGATCTGATTCGTCTCAATATTACTATGGCTCCCTTGATTTAGAATAAGAAATGAAATGGTTTAGGAGTTACCCCCTTTTCATAATCCAAATACTCTACGACTTCCTCTAAAAATACTTCTCGATTCAGAAGGAAACGCATCATTAGTGTTTACATATTTTTGCAAAGTACTTTTACACAAACATACGGCTGCACATACTAGTTTTTATGTGAATTTTTTATGGAGGAAGCAAATGCCCCTAGAACACAAGGAGTTGGCTAGTAAAACATCAAGTATAGGACCATCAGTGATTTGGGTCCTTCGGTTCACATAATCGAGTTCAAGCCTTAAAAAACTTCCAAGTTCTTGCATCTTTTGTCCACGTTTTGAGAAACAATTCTTTGCATTTTAAGCTAATCAATCCTGTA

Coding sequence (CDS)

ATGGCCGGTCTTCTTCTCCACTCCTCTTCAACTGCCAGCGTTCTGCTTGGAGGAATGGGGAAATTTAGGGAAGGGAATCGTCATTCGATTTTTACGCCCAAGAAACCTATGCGTGCTAACTGCCTTCGTCTCGGCTGCAGTAATTCAACGAATGCCATCTGCGCTTTCCTTTTCAATCCTTTGGAGGATCCTGTTGTCAAAGAAGCTCTTAAGGAGCCGGTTGCGTTCGCAGGTGGGCTATTTGCTGGGCTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACGGTGGAATCTGCTGGAATCACAGAAGAAGTTGACACCCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATCGAGATTGAATGA

Protein sequence

MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQEDGPTEIEIE

Homology

[Close]

BLAST of Carg04720 vs. NCBI nr
Match: KAG7020036.1 (UPF0426 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.3e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. NCBI nr
Match: XP_023518976.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 125/128 (97.66%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTASVLLGGMGKFREGNRH IF+PKKPMRANCLRLGCSNSTN ICAFLFNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. NCBI nr
Match: XP_023000721.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 6.5e-63
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTA VLLGGMGKFREGNRHSIF+PKKPMRANCLRLGC+NSTNAICAFLF P
Sbjct: 1   MAGLLLHSSSTACVLLGGMGKFREGNRHSIFSPKKPMRANCLRLGCNNSTNAICAFLFTP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. NCBI nr
Match: XP_022924196.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 125/128 (97.66%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTASVLLGGMGKFREGNRHSIF+PKKPMRAN LRLGCSNSTN ICAFLFNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. NCBI nr
Match: KAG6584446.1 (BTB/POZ and TAZ domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGS 117
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGS
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGS 116

[Close]

BLAST of Carg04720 vs. ExPASy Swiss-Prot
Match: Q9FZ89 (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g28150 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-19
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 58  FNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS 117
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++GIT EEVD  G 
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 118 V--QEDGPTEIEIE 129
           V   ED P +IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

[Close]

BLAST of Carg04720 vs. ExPASy Swiss-Prot
Match: P74786 (UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=ssl0294 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-07
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 64  PVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITE--EVDTQGSVQEDG 123
           PV +E  ++P+AFAGG  +G+LRL L +DPLK+W++K     G+T+    D   + Q++ 
Sbjct: 8   PVTRELCQQPIAFAGGFVSGVLRLKLTDDPLKKWLQK----QGVTDFSGADINQTAQDNR 67

Query: 124 PTEIEIE 129
           P  I+I+
Sbjct: 68  PQSIDID 70

[Close]

BLAST of Carg04720 vs. ExPASy TrEMBL
Match: A0A6J1KGM3 (UPF0426 protein At1g28150, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495083 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTA VLLGGMGKFREGNRHSIF+PKKPMRANCLRLGC+NSTNAICAFLF P
Sbjct: 1   MAGLLLHSSSTACVLLGGMGKFREGNRHSIFSPKKPMRANCLRLGCNNSTNAICAFLFTP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. ExPASy TrEMBL
Match: A0A6J1E8W6 (UPF0426 protein At1g28150, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431718 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.4e-63
Identity = 125/128 (97.66%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MAGLLLHSSSTASVLLGGMGKFREGNRHSIF+PKKPMRAN LRLGCSNSTN ICAFLFNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. ExPASy TrEMBL
Match: A0A5D3BGH6 (UPF0426 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00680 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MA LLLHSSSTASVL G MGK +  + HSI + KKPMR++ LRLG +NSTN I AF FNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQGSVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. ExPASy TrEMBL
Match: A0A1S3AZP7 (UPF0426 protein At1g28150, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484480 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MA LLLHSSSTASVL G MGK +  + HSI + KKPMR++ LRLG +NSTN I AF FNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQGSVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. ExPASy TrEMBL
Match: A0A0A0LT92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032470 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.4e-48
Identity = 101/128 (78.91%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFTPKKPMRANCLRLGCSNSTNAICAFLFNP 60
           MA LLLHSSSTASVL G MGK +  N +SI + KKP+R++  RLG +NSTN I AF FNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           + DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+ EEVDTQGSVQED
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLREEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Carg04720 vs. TAIR 10
Match: AT1G28150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-20
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 58  FNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS 117
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++GIT EEVD  G 
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 118 V--QEDGPTEIEIE 129
           V   ED P +IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

The following BLAST results are available for this feature:

BLAST of Carg04720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020036.1	5.3e-65	100.00	UPF0426 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023518976.1	2.2e-63	97.66	UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023000721.1	6.5e-63	96.88	UPF0426 protein At1g28150, chloroplastic [Cucurbita maxima]	[more]
XP_022924196.1	1.1e-62	97.66	UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata]	[more]
KAG6584446.1	2.2e-58	100.00	BTB/POZ and TAZ domain-containing protein 1, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Carg04720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ89	4.6e-19	64.86	UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P74786	6.9e-07	40.30	UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=11117...	[more]

BLAST of Carg04720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGM3	3.2e-63	96.88	UPF0426 protein At1g28150, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1E8W6	5.4e-63	97.66	UPF0426 protein At1g28150, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3BGH6	1.4e-50	82.03	UPF0426 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G0068...	[more]
A0A1S3AZP7	1.4e-50	82.03	UPF0426 protein At1g28150, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484480...	[more]
A0A0A0LT92	8.4e-48	78.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032470 PE=4 SV=1	[more]

BLAST of Carg04720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28150.1	3.3e-20	64.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..128
IPR040278	UPF0426 protein	PANTHER	PTHR35996	OSJNBA0038O10.25 PROTEIN	coord: 40..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04720-RA	Carg04720-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0046910	pectinesterase inhibitor activity