Carg04488 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04488
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 20190393 .. 20190598 (+)
RNA-Seq ExpressionCarg04488
SyntenyCarg04488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATGAATATATTGTATGAAAATCATATGAATGGACTAATTTATGGACTCGACATTGACAAATCAAACCCAGCTCAACTCCGAAGAGAATATAATTATCTTCTTTTAGGTCTTTTACGTAACCACTCAAATACCCTTATAATGAATGATTCGTTCTATTCTCGAATCAACGTGGGATCTCACAATCCACCCCACTGCTAGGG

mRNA sequence

ATGATCATGAATATATTGTATGAAAATCATATGAATGGACTAATTTATGGACTCGACATTGACAAATCAAACCCAGCTCAACTCCGAAGAGAATATAATTATCTTCTTTTAGGTCTTTTACGTAACCACTCAAATACCCTTATAATGAATGATTCGTTCTATTCTCGAATCAACGTGGGATCTCACAATCCACCCCACTGCTAGGG

Coding sequence (CDS)

ATGATCATGAATATATTGTATGAAAATCATATGAATGGACTAATTTATGGACTCGACATTGACAAATCAAACCCAGCTCAACTCCGAAGAGAATATAATTATCTTCTTTTAGGTCTTTTACGTAACCACTCAAATACCCTTATAATGAATGATTCGTTCTATTCTCGAATCAACGTGGGATCTCACAATCCACCCCACTGCTAG

Protein sequence

MIMNILYENHMNGLIYGLDIDKSNPAQLRREYNYLLLGLLRNHSNTLIMNDSFYSRINVGSHNPPHC
Homology
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BLAST of Carg04488 vs. NCBI nr
Match: KAG7033065.1 (hypothetical protein SDJN02_07118, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MIMNILYENHMNGLIYGLDIDKSNPAQLRREYNYLLLGLLRNHSNTLIMNDSFYSRINVG 60
          MIMNILYENHMNGLIYGLDIDKSNPAQLRREYNYLLLGLLRNHSNTLIMNDSFYSRINVG
Sbjct: 1  MIMNILYENHMNGLIYGLDIDKSNPAQLRREYNYLLLGLLRNHSNTLIMNDSFYSRINVG 60

Query: 61 SHNPPHC 68
          SHNPPHC
Sbjct: 61 SHNPPHC 67

The following BLAST results are available for this feature:
BLAST of Carg04488 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033065.11.0e-30100.00hypothetical protein SDJN02_07118, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04488 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04488 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04488 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04488-RACarg04488-RAmRNA