Carg03649 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTGCGGGATTGATGTTTTCAGCTGTTCTCAGTGGTTCACTATAGTGGATGGTAATTTCGGGGGCCGATTTCTGCTTGATTTCTTGGGTTTTCTGTCGATTAAAAGGTGAGGAAATTTTGGGAACAGGGTACAAATTGTTGAATATTTTTCGTGTCTTTGTTTTCGTTCTGTTGAATTGTAGCTCTCGGGGGAAATGGAATTTCTTTGAATGCTAGGGTAAGCGCTTGAAATTATTTAGATAACCGGCGGAGTTTCCCTCTGGAGCTTTCAATTTTTGGGTATCTGTTCAATTTACGTCTCGAATGCTTAATTTGATGAAGAACATTGCGGAAGTTATTTCGTGTTCTTTCTTGTAGATCCATTAGGAATCAAATTCTGCTTGATTATGTTCTCTCTTGTTTCTTGTTATAATTATGGAGTTATATTGATGCATAGCCATGTATATGCAGCTATTGGGAAGAACGGGTAACTTACTACTTTTTGGAAACCACAAAACTTGGTTGTAATAATGTCAAGACCTTGGGTTCTTGTCTGTCTGCTGTTACTCATCGTGTTCTCCTCACAATTTGAGTGGAGGCAACAGTATGAGAACGAGCTTGAAGCAGGCCCAAACGCCTCACAGACAGAACCCCATATGTCTGAAAGAGAGGAAGCTGTAAAAGAAAAGGTGAAATTCCAGTTTTCTATCTCTTTTTCCCTTCAAGTTTGGCAAACTACTTGAATGTTTCAGGTGTTTCAATTTCTTTCAATGCTTTAAATAATTAGATTTTCAATTGTTGTTACTGTTGCTATTATATTGGAACCATATATGCATTGGGTTTTTATAAACTCCCCACTCTTACTCTGGAAGATGAGATCTCATATTGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTATGGAAACCTCTGAAAAGGAAAGTCCAAAAAGGACAATATATACTAGCGGTGAACTTGGGCTGTTACATATAGTTTGTTCACGTGGGCATGTGAACATTTTGGTATTTTGGCTTAGAATTCAGTCTAGAAGGGAGTGTTCCCTGTCTCTCGAAGCGCTGTGTTCCTCGTGTGTGATTTTGCTGTCTTGAGATATTGTGAAGGTGACTGATAGGTAAAATTGGATAGTCACCTTCACCGCTAGTAGATATTGTATAGTATGGTGGACGGCAAGATTTGCTAAAATGTTATTCGAAGATTTGCTTTCGACCATAAGGAAAGGTAGAGAGTTTTTCAAGCATGATACCCTTTTATTAGTTTTGTTGCTCTTGAAAGCTTTTAGAGACAACCTGAATCTTCTTCAGAATCCGATCCTTAAAGATATCTTTGTGGGAATCCTACCAAAAGTGTTGAAGCTATGATTTGAAGACTTACATTAGAAAATACAGGAATTTTCCCATCATTTTCTCCTATAATACTGTTACGAGTAAGGACGGTACTATCTAAAATAGAAAAAGAGGTTAGCTAACGTGAGATCCTACATTAGTTGAAGAGGGGAACGAAACATTCCTTATAAGGGTATGAAAACCTCTTCCTAGTAGACGTGTTTTAAAACCGTGAGACTAACGATGATACGTAACGGGCCAAAACAAACAATATCTACTAGCGGTGAACTTGGGCTGTTACATTTCTACTTGCGTTGGGCCAAGCCAACTTTACTACGTTTTTTTGTTTGGTTTGTTTGGTTTCTCCATTTTATTTATGACTGGTCTTGTTGGTTTGTAATATGATCTGTAAATATAATACTAAAAGTTCTTTCAATGCTACTGTAGATTATCCTTTCCCAGGAGAAAAACATCCGGAGATTGAATGAGGTGGTGCAGAGTCTTAGAAGAGAGTTGGTCGAGTGCAGGGGTGAAGAACACGAGGCAGTGAATAGCACGGTGAGGCCTATGACTGAGCTTCTAACAGTGTTCAACCAGCACCCGATATTAGATGATTAGGTCCCATGCCACTGACCACCACCCGTTCTTGTTATTACACTTTGATAGGACTCTTAACTGTAGATGAAGAACAATCTGTCCTTCTTCAACTCTATCCATCACTCATAATTATATATATCAAATCTACGCCCTATGATTAATTAAGCTTAGTATACTCTTATTTGAAAATAATAAAATTATAAAAGTGTTGTACAACAAACTGCTATTTATGTATATATTTGTTCTGTCTGCTCTCTGTACCCAAAATTTTATGGCTGGTCTATAGGTATGCTACTAACTAAATGCACTTTACTTCCATTCAGTGGGGATTGGTTTCAATATTCAAATTCCAAGTTTTACAGTTGAGGGGCTTTGAAT TTTGCGGGATTGATGTTTTCAGCTGTTCTCAGTGGTTCACTATAGTGGATGGTAATTTCGGGGGCCGATTTCTGCTTGATTTCTTGGGTTTTCTGTCGATTAAAAGTATGAGAACGAGCTTGAAGCAGGCCCAAACGCCTCACAGACAGAACCCCATATGTCTGAAAGAGAGGAAGCTGTAAAAGAAAAGATTATCCTTTCCCAGGAGAAAAACATCCGGAGATTGAATGAGGTGGTGCAGAGTCTTAGAAGAGAGTTGGTCGAGTGCAGGGGTGAAGAACACGAGGCAGTGAATAGCACGGTGAGGCCTATGACTGAGCTTCTAACAGTGTTCAACCAGCACCCGATATTAGATGATTAGGTCCCATGCCACTGACCACCACCCGTTCTTGTTATTACACTTTGATAGGACTCTTAACTGTAGATGAAGAACAATCTGTCCTTCTTCAACTCTATCCATCACTCATAATTATATATATCAAATCTACGCCCTATGATTAATTAAGCTTAGTATACTCTTATTTGAAAATAATAAAATTATAAAAGTGTTGTACAACAAACTGCTATTTATGTATATATTTGTTCTGTCTGCTCTCTGTACCCAAAATTTTATGGCTGGTCTATAGGTATGCTACTAACTAAATGCACTTTACTTCCATTCAGTGGGGATTGGTTTCAATATTCAAATTCCAAGTTTTACAGTTGAGGGGCTTTGAAT ATGTCTGAAAGAGAGGAAGCTGTAAAAGAAAAGATTATCCTTTCCCAGGAGAAAAACATCCGGAGATTGAATGAGGTGGTGCAGAGTCTTAGAAGAGAGTTGGTCGAGTGCAGGGGTGAAGAACACGAGGCAGTGAATAGCACGGTGAGGCCTATGACTGAGCTTCTAACAGTGTTCAACCAGCACCCGATATTAGATGATTAG MSEREEAVKEKIILSQEKNIRRLNEVVQSLRRELVECRGEEHEAVNSTVRPMTELLTVFNQHPILDD Homology
BLAST of Carg03649 vs. NCBI nr
Match: KAG7017479.1 (hypothetical protein SDJN02_19344 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Carg03649 vs. NCBI nr
Match: XP_022934177.1 (uncharacterized protein LOC111441421 [Cucurbita moschata]) HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Carg03649 vs. NCBI nr
Match: KAG6580725.1 (hypothetical protein SDJN03_20727, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Carg03649 vs. NCBI nr
Match: XP_023528007.1 (uncharacterized protein LOC111791054 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 124.0 bits (310), Expect = 4.8e-25 Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0
BLAST of Carg03649 vs. NCBI nr
Match: XP_038906290.1 (uncharacterized protein LOC120092148 [Benincasa hispida] >XP_038906291.1 uncharacterized protein LOC120092148 [Benincasa hispida]) HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19 Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 0
BLAST of Carg03649 vs. ExPASy TrEMBL
Match: A0A6J1F1Y7 (uncharacterized protein LOC111441421 OS=Cucurbita moschata OX=3662 GN=LOC111441421 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 9.5e-27 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Carg03649 vs. ExPASy TrEMBL
Match: A0A5D3DP23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004310 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 6.6e-20 Identity = 55/67 (82.09%), Postives = 65/67 (97.01%), Query Frame = 0
BLAST of Carg03649 vs. ExPASy TrEMBL
Match: A0A0A0LEP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778330 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 6.6e-20 Identity = 55/67 (82.09%), Postives = 65/67 (97.01%), Query Frame = 0
BLAST of Carg03649 vs. ExPASy TrEMBL
Match: A0A1S3B7I0 (uncharacterized protein LOC103486653 OS=Cucumis melo OX=3656 GN=LOC103486653 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 6.6e-20 Identity = 55/67 (82.09%), Postives = 65/67 (97.01%), Query Frame = 0
BLAST of Carg03649 vs. ExPASy TrEMBL
Match: A0A6J1CT86 (uncharacterized protein LOC111014372 OS=Momordica charantia OX=3673 GN=LOC111014372 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17 Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of Carg03649 vs. TAIR 10
Match: AT3G44280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08 Identity = 29/48 (60.42%), Postives = 44/48 (91.67%), Query Frame = 0
BLAST of Carg03649 vs. TAIR 10
Match: AT5G22280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07 Identity = 28/48 (58.33%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg03649 vs. TAIR 10
Match: AT5G22280.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07 Identity = 28/48 (58.33%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg03649 vs. TAIR 10
Match: AT5G06265.1 (hyaluronan mediated motility receptor-related ) HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04 Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of Carg03649 vs. TAIR 10
Match: AT5G06265.2 (hyaluronan mediated motility receptor-related ) HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04 Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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