Carg03462 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03462
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr14: 2645203 .. 2649742 (-)
RNA-Seq ExpressionCarg03462
SyntenyCarg03462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAGGGAAAATCCGAATGAGCAATTTAGCGGGAGTGTCAGCTGAACTCACACATACTTCGATATCAAGGTATATTTTTATATACTACCAATTATGTCAAAGGCCGGGGAAATTATAACCTTCGTAATTCCTTCTTTTATCCCAGCAGATACGACGTAGCGTAAAGCCTCCAATACTTTTCTAAGAGCCATCGTGTAGTCTTGCCCTTCTGTAAGCGAAACAGAAACCACATCATAAAATTCAATGATATCAAGCTAACGGAAAATCAAATCCATAGCGCCTTGCTCATCGAGGTTTCTATCGAAATAGGAACGAATTCTGATGTTACCAATTACCTTCGGTAATGCTCATTACCAAAAAACCCCTTATAGCGTGAACTTATGCACAGAATACAACATAACATTCAACTTCATAAGCAGTCCCAATTTCAGACATCGCCTCACCATTGTAATGAAAAGCAGAGTTCACTTTATATAATAAGGAAATCGGCTTCCAACGATTTCCTTACTCTGGCGAGGAAGTAGACTCACCTTGATCCTTCCGTGTAGTCCTCAGAAAAGAAGAATCTTTGAGCTTTATTCAATGTGATCTGACTGGGTGGTATAGCTATGAATGTTTATTAAGTTGACTGTCTCAAGAATTCAGGATAGATGCTTGTTCTCTTCTTTAACTCTCTTAACATTTTTCTTAGGTTTTCCTATTCTACTTCCTGTGCATGTTTCAACTGTCAGTCCACTCACTTAACTTCCTAACGAATTCTTGACTCATGAACAATCCAATTAACTGGCACCAATAGGTATAACAGTTAATGTGTTGCTAATTACTCTTCCTCTGTTCTGCCTAATCTATGTAAAATGTACGGGTACCCTAGTATGCTCATTAATACTTTGTCCAAACTTTTACAAGAACGAGCTCCAATTCAAGTAACCTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGAAGGTTAAATTTCTAAGAAAGTGAAGTTTTTTTTCTTTCCAAGTCTTACATGGAAGAGTGAACACCCAAGATCGCATCTAGCAGCACTCTACCTTGGTTTTACGCCCGCAATGGTGTGTTCTTTGTAGAAAACATGAGGGATCTTGATATCACTTATGAGGTTGCCAGTTTGCTTACTCCCTTTGGAATCGGTGCTTCAGTTTGTTTGGGGTTCCTGTGGTGTGTAATAGGGACTTATGGCCTTTGTTTGAGGAAAGTGTGATGAACTTTTTGTTTCGTGTTAAGGGGAGGTCTTGTGGCAGACTTACTGTTTTGCAATCTTGTAGAGCATGTGGATTGAGAGAAATATAAGAATTCTTGGAGGGATGGAGAGGTCTTTAGACAAGGTTTTGGAAGGATGATGTTTGATAAAGGGCATTTGGTAGGCCTATTCTCTCTAACTCTCATAATTTTGACTATCTTCTTCTCAGCCTCTTGTACACACAACGACTGCCAGTCTCCTCAGTTAACTTCCTGACCGAGGGAATTTACTAACAGCCTCTCAACTTACATCAACCAGCTATAAAAGGCAGTTAGCTACTTAACTAGTCTTCTCTCGCTATGCCTAGCATCATTTATCTATCTAGGTGACATAGTTTTCCCATCATCCTCAGACATTTCTAATATGATTACCACTTATGATTACAGTTGTATATAATCATTACAATTTTTTCAAGGCATCCTTCTTTGCTTTGAATCATTTGAGCACAATGGTTTTCAGGTTTACTTATTGATGGTTTATTCTTAAATATATTTACCAAATGTTATTTGTTAGGTGTACTTGAAGTGTGATTATGTGTATAAGGTTTTTTCTTTTGTGTATTAGGTCTTTCTTCTACTTAAGATAGACCCTTGTAACTATTGTAAAAGTGAGAGAATTATTATCCGACTTTTACCTTGAAAATTAGTAACTTATTGTTTTCATTCTTTCACTAAGAAACTATTTACTGAAATTTGTATGCAGACTACGAGATTGGAGGAAAGCAACTGACATAATAAAGCTTATGGAGCCCTCTTTGCATCTTGTCTCAGTTGGAACTATTAATCATCTTCTGCATTTTCTGGGAAAAAGTGGAAAGATGGAGATTATGATGAAGGTAGTTGGAAAATATAAGTGTCGATATATTTCTTATGGGTTAATGGTGGGAATCAAGCAAATTTTTCTACACATTCTTTTACTTCAAAATTTCCCCTGTTTCCTTATCGTTTAAAGTCTGATATCTATGAACATGATTTACATATGCCAACTGTTTGTATCCTTGTAATGCGTTGAACTCTAAGCTATTTTATCCCAAAATACAGCTGTTTTACAGATTCGTGGCATTGGGATCCAGTGTCAATATTAGTACTTATTCAATCTTGTTGAAGAATCTCTTGTCTTTTGGAAATTGGAGGAAATACATTGAGGTACGCTTTATGTTTCAGTAACTTGGCATTTCAAAGCCCTTGAGCTGTTCTTACTAATATATACCTATGACTGCTGATTATAGGAGTTGTATATTACTTGGACATTAGTTGTCCTATGTTTTTTTTTTTTCCTGATACCTCGGTGCTAATACTAAAGCAACTTTGAGCAAGCCTAGACAATGGAGCAGTACCATATTAGTCTTTGTCTATACATGATAGTCCAAATTCTTTTGAATCTTTAGTTAAGATGCCAAGAGTCCTGATTTCTAGAGCAGGATACAACGTTTGAATGTCTTATGCAAGTTTATGTTGGATGAGTCTGTTTGTCATTGATCAATCAAGTTCCTGAATCAAGGAAGAATTAGAGAGCTTTCCGTTGCTACTTATTACCACTCTCTCTCTGACTGACTATAGCAAAAACGCCCCTCCTAGCTCATTACGAATTCCATACCATGTTACTGTCTCTTTTCTTCAGTTCCTTGTTTTTAGTCTGTGGAGTTTGGTACAATTTTGGTTCGTACTTTTACCCTTTCATTAAATTTTTGCTTTCTATTAAATAACATGGCTTTTTTAAGTGTTTTCATCATATTCCCAGCCAGGAATATAGAAATTTAAATAAACTTATGTACAGGTCTTGCAGTGGATGGATGATGCTGGAATCCAACCCTCTAATGCAATGTACAATGACATACTTTACTTCGCACAAAATTGTGGTGGTGCAGAGTGCGCTGCTATCATCAAGGAAAGAGTTGGTATGTTGGTTGTGTGTATTTCTGCTATTATAATTGTTATTTTAGCGAGAAACCATACTCATACATGAGGTACCAGTTGCATATCGTTTACCTAATAAAAATATTTCTGAACTTTCAAAAGTTTTAATGATACCCTTATACTTTAAAAAAAAATCAAAAGTACATTTACCGTTATTTTTAGAGGGACCATCAATATTCTATTTCAAAAATACCTTTGAACTTTCAAATCATTAATACTCTTAAAAAAGTTCGAAATACCATCGAACTCTCAACAATTTTATTATTGTTCTTTAAAACTTTTTTAATAATGTTAAAATATACCCTTAACCTTTAAGAGTTTCATTAGTTTAAGAAATTTTACACCTAAATAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGTTATCTGGGAAAGAACCAACTTGCAAATAAACAAAGGATAGTTGTTGAACCTAGCCATAGTCCAAAACTCCTCAACACATCTCTACCCCACTAAAAGTCTTCTTGCTCCTCTGAAGCTAAATGCTCCACAAACTAATGAAAATGATTTCCCTCTGCAAGGCACCAACTCCTTATGAGTTAAAAACAACTTTTGGTGAACTTATGATGGAGCAGGAGGATGTTACCCTATTTAGAAATTTAGTAGAGAGAAAATAAGACAAATAGATATGTAATTTATTATCTCATGCTGGTGTATAAGGTTAGCTTGTTACTGTAATTTTCAGTCATTTCAGGTTGAGTTGAGTTGTACTCTTTGAACTGTTAGAAAGTTTCATTTAGTTTCATTATATTGTTATCGTTTTTCGATCTGGTAGTGATCTCTTGCACCATAAAATCCCATGCAGAATCCCTGAAAAGATAGCATGGAGCAAACTCTGCATTCACATCCTTCCATTTTATCCACACAAGGTGTTAATATGTGTCTACCCTCTATGCGGATGCAGCAGTCCGCTTGAAAGGCTCTCATTGAAAGATCCACTGAGGTGATTTAGCCACCAAAGTTTCTTGTCCGCATTTATCCAAAGATGGTACAGTCTAACACTTCCTTGTATAGCTCAAGTGGGAAGGGATTGGTGGCACGAGAACTTTGAATCCTCATTGATTGTTTGTAATGTATGTCACTTCCTTGTATAGCTCAAGTGGGAAGGGATTGGTGGCACGAGAACTTTGAATCCTCATTGATTGTTTGTAATGTATGTGGGATGAAAATCCCACCTCAGATAATTACTATCTATCTTTATTGATACGAGGCCTTTTGGGGAAAAGCCCAAAGCAAAGCTATGAGAGCTTATGCTCAAAATGAACAATATCATACCATTGTGAAAAGTTGTGTTCATCTAACTATGTAAACTTATAAT

mRNA sequence

ATTCAGGGAAAATCCGAATGAGCAATTTAGCGGGAGTGTCAGCTGAACTCACACATACTTCGATATCAAGACTACGAGATTGGAGGAAAGCAACTGACATAATAAAGCTTATGGAGCCCTCTTTGCATCTTGTCTCAGTTGGAACTATTAATCATCTTCTGCATTTTCTGGGAAAAAGTGGAAAGATGGAGATTATGATGAAGCTGTTTTACAGATTCGTGGCATTGGGATCCAGTGTCAATATTAGTACTTATTCAATCTTGTTGAAGAATCTCTTGTCTTTTGGAAATTGGAGGAAATACATTGAGGTCTTGCAGTGGATGGATGATGCTGGAATCCAACCCTCTAATGCAATGTACAATGACATACTTTACTTCGCACAAAATTGTGGTGGTGCAGAGTGCGCTGCTATCATCAAGGAAAGAGTTGAATCCCTGAAAAGATAGCATGGAGCAAACTCTGCATTCACATCCTTCCATTTTATCCACACAAGGTGTTAATATGTGTCTACCCTCTATGCGGATGCAGCAGTCCGCTTGAAAGGCTCTCATTGAAAGATCCACTGAGGTGATTTAGCCACCAAAGTTTCTTGTCCGCATTTATCCAAAGATGGTACAGTCTAACACTTCCTTGTATAGCTCAAGTGGGAAGGGATTGGTGGCACGAGAACTTTGAATCCTCATTGATTGTTTGTAATGTATGTCACTTCCTTGTATAGCTCAAGTGGGAAGGGATTGGTGGCACGAGAACTTTGAATCCTCATTGATTGTTTGTAATGTATGTGGGATGAAAATCCCACCTCAGATAATTACTATCTATCTTTATTGATACGAGGCCTTTTGGGGAAAAGCCCAAAGCAAAGCTATGAGAGCTTATGCTCAAAATGAACAATATCATACCATTGTGAAAAGTTGTGTTCATCTAACTATGTAAACTTATAAT

Coding sequence (CDS)

ATGAGCAATTTAGCGGGAGTGTCAGCTGAACTCACACATACTTCGATATCAAGACTACGAGATTGGAGGAAAGCAACTGACATAATAAAGCTTATGGAGCCCTCTTTGCATCTTGTCTCAGTTGGAACTATTAATCATCTTCTGCATTTTCTGGGAAAAAGTGGAAAGATGGAGATTATGATGAAGCTGTTTTACAGATTCGTGGCATTGGGATCCAGTGTCAATATTAGTACTTATTCAATCTTGTTGAAGAATCTCTTGTCTTTTGGAAATTGGAGGAAATACATTGAGGTCTTGCAGTGGATGGATGATGCTGGAATCCAACCCTCTAATGCAATGTACAATGACATACTTTACTTCGCACAAAATTGTGGTGGTGCAGAGTGCGCTGCTATCATCAAGGAAAGAGTTGAATCCCTGAAAAGATAG

Protein sequence

MSNLAGVSAELTHTSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAIIKERVESLKR
Homology
[Close]
BLAST of Carg03462 vs. NCBI nr
Match: KAG7017664.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSNLAGVSAELTHTSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIM 60
           MSNLAGVSAELTHTSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIM
Sbjct: 1   MSNLAGVSAELTHTSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIM 60

Query: 61  MKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYF 120
           MKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYF
Sbjct: 61  MKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYF 120

Query: 121 AQNCGGAECAAIIKERVESLKR 143
           AQNCGGAECAAIIKERVESLKR
Sbjct: 121 AQNCGGAECAAIIKERVESLKR 142

[Close]
BLAST of Carg03462 vs. NCBI nr
Match: KAG6580916.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERVESLKR 143
           KERVESLKR
Sbjct: 817 KERVESLKR 825

[Close]
BLAST of Carg03462 vs. NCBI nr
Match: XP_022934373.1 (pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Cucurbita moschata])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERVESLKR 143
           KERVESLKR
Sbjct: 817 KERVESLKR 825

[Close]
BLAST of Carg03462 vs. NCBI nr
Match: XP_022983707.1 (pentatricopeptide repeat-containing protein At2g41720 isoform X2 [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERVESLKR 143
           KERVESLKR
Sbjct: 817 KERVESLKR 825

[Close]
BLAST of Carg03462 vs. NCBI nr
Match: XP_023526155.1 (pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRF+ALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFMALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERVESLKR 143
           KERVESLKR
Sbjct: 817 KERVESLKR 825

[Close]
BLAST of Carg03462 vs. ExPASy Swiss-Prot
Match: Q8RWS8 (Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana OX=3702 GN=EMB2654 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-35
Identity = 65/128 (50.78%), Postives = 97/128 (75.78%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ + L++W++A D+I++M+P L  +S+G  N +LH  GKSGK+E MMKLFY+ +A G  
Sbjct: 678 SACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVG 737

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           +N+ TY+ILL++LL+ GNWRKYIEVL+WM  AGIQPSN MY DI+ F +   G E   +I
Sbjct: 738 INLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLI 797

Query: 134 KERVESLK 142
           ++++ESL+
Sbjct: 798 RQKLESLR 805

[Close]
BLAST of Carg03462 vs. ExPASy Swiss-Prot
Match: Q9S7R4 (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OTP43 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 29/102 (28.43%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 38  LVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIE 97
           L SV T N ++  L K   +E  + +F   V  G   N++TY++L++ L   G + +  E
Sbjct: 297 LPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEE 356

Query: 98  VLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAIIKERVES 140
           ++Q M++ G +P+   YN ++ +   C   E A  + E++ S
Sbjct: 357 LMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGS 398

[Close]
BLAST of Carg03462 vs. ExPASy TrEMBL
Match: A0A6J1J042 (pentatricopeptide repeat-containing protein At2g41720 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482245 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.4e-64
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERVESLKR 143
           KERVESLKR
Sbjct: 817 KERVESLKR 825

[Close]
BLAST of Carg03462 vs. ExPASy TrEMBL
Match: A0A6J1F7H2 (pentatricopeptide repeat-containing protein At2g41720 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441562 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.4e-64
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERVESLKR 143
           KERVESLKR
Sbjct: 817 KERVESLKR 825

[Close]
BLAST of Carg03462 vs. ExPASy TrEMBL
Match: A0A6J1J354 (pentatricopeptide repeat-containing protein At2g41720 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482245 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.3e-61
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERV 138
           KERV
Sbjct: 817 KERV 820

[Close]
BLAST of Carg03462 vs. ExPASy TrEMBL
Match: A0A6J1J8H8 (pentatricopeptide repeat-containing protein At2g41720 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482245 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.3e-61
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERV 138
           KERV
Sbjct: 817 KERV 820

[Close]
BLAST of Carg03462 vs. ExPASy TrEMBL
Match: A0A6J1F2E1 (pentatricopeptide repeat-containing protein At2g41720 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441562 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.3e-61
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ S LRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS
Sbjct: 697 SACSTLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 756

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII
Sbjct: 757 VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 816

Query: 134 KERV 138
           KERV
Sbjct: 817 KERV 820

[Close]
BLAST of Carg03462 vs. TAIR 10
Match: AT2G41720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-36
Identity = 65/128 (50.78%), Postives = 97/128 (75.78%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ + L++W++A D+I++M+P L  +S+G  N +LH  GKSGK+E MMKLFY+ +A G  
Sbjct: 678 SACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVG 737

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           +N+ TY+ILL++LL+ GNWRKYIEVL+WM  AGIQPSN MY DI+ F +   G E   +I
Sbjct: 738 INLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLI 797

Query: 134 KERVESLK 142
           ++++ESL+
Sbjct: 798 RQKLESLR 805

[Close]
BLAST of Carg03462 vs. TAIR 10
Match: AT2G41720.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-35
Identity = 62/128 (48.44%), Postives = 95/128 (74.22%), Query Frame = 0 

Query: 14  TSISRLRDWRKATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSS 73
           ++ + L++W++A D+I++M+P L  +S+G  N +LH  GKSGK+E MMKLFY+ +A G  
Sbjct: 546 SACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVG 605

Query: 74  VNISTYSILLKNLLSFGNWRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAII 133
           +N+ TY+ILL++LL+ GNWRKYIEVL+WM  AGIQPSN MY DI+ F +   G E   +I
Sbjct: 606 INLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLI 665

Query: 134 KERVESLK 142
           ++++  ++
Sbjct: 666 RQKLGEMR 673

[Close]
BLAST of Carg03462 vs. TAIR 10
Match: AT1G74900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 29/102 (28.43%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 38  LVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIE 97
           L SV T N ++  L K   +E  + +F   V  G   N++TY++L++ L   G + +  E
Sbjct: 297 LPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEE 356

Query: 98  VLQWMDDAGIQPSNAMYNDILYFAQNCGGAECAAIIKERVES 140
           ++Q M++ G +P+   YN ++ +   C   E A  + E++ S
Sbjct: 357 LMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGS 398

[Close]
BLAST of Carg03462 vs. TAIR 10
Match: AT1G10910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 30/106 (28.30%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 24  KATDIIKLMEPSLHLVSVGTINHLLHFLGKSGKMEIMMKLFYRFVALGSSVNISTYSILL 83
           KA +I + +      ++V   N +L  L K+GK++  +KLF +    G   ++ TY+ LL
Sbjct: 149 KALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLL 208

Query: 84  KNLLSFGN-WRKYIEVLQWMDDAGIQPSNAMYNDILYFAQNCGGAE 129
              +   N + K IE++  +   GIQ  + MY  +L    + G +E
Sbjct: 209 AGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSE 254

[Close]
BLAST of Carg03462 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 0 

Query: 43  TINHLLHFLGKSGKMEIMMKLFYRFVALGSSVNISTYSILLKNLLSFGNWRKYIEVLQWM 102
           T N L+  L ++G  ++  K+F + V+ G   +I TYSILL  L  +G   K + V +++
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491

Query: 103 DDAGIQPSNAMYN 116
             + ++P    YN
Sbjct: 492 QKSKMEPDIYTYN 504

The following BLAST results are available for this feature:
BLAST of Carg03462 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017664.14.5e-73100.00Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr... [more]
KAG6580916.11.1e-6396.90Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022934373.11.1e-6396.90pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Cucurbita mosc... [more]
XP_022983707.11.1e-6396.90pentatricopeptide repeat-containing protein At2g41720 isoform X2 [Cucurbita maxi... [more]
XP_023526155.12.5e-6396.12pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Cucurbita pepo... [more]
BLAST of Carg03462 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWS83.0e-3550.78Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana OX... [more]
Q9S7R42.2e-0628.43Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop... [more]
BLAST of Carg03462 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J0425.4e-6496.90pentatricopeptide repeat-containing protein At2g41720 isoform X2 OS=Cucurbita ma... [more]
A0A6J1F7H25.4e-6496.90pentatricopeptide repeat-containing protein At2g41720 isoform X1 OS=Cucurbita mo... [more]
A0A6J1J3543.3e-6196.77pentatricopeptide repeat-containing protein At2g41720 isoform X1 OS=Cucurbita ma... [more]
A0A6J1J8H83.3e-6196.77pentatricopeptide repeat-containing protein At2g41720 isoform X3 OS=Cucurbita ma... [more]
A0A6J1F2E13.3e-6196.77pentatricopeptide repeat-containing protein At2g41720 isoform X2 OS=Cucurbita mo... [more]
BLAST of Carg03462 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G41720.12.1e-3650.78Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G41720.26.8e-3548.44Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G74900.11.6e-0728.43Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G10910.12.1e-0428.30Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62930.12.1e-0431.51Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..142
NoneNo IPR availablePANTHERPTHR47938:SF5OS07G0213300 PROTEINcoord: 16..118
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 16..118
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 4..137
e-value: 1.4E-15
score: 59.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 67..118
e-value: 8.6E-5
score: 22.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 75..109
score: 9.755614

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03462-RACarg03462-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0008380 RNA splicing
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome