Carg03251 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGACGACGTTTAGGGCCACTGCTGGGGAAAGAGAACGATCTGAACAAGAAAGATCATTTCTTGAGCGAAGGGAAACGAAGAGCTCTACTAAAGCAGTCGAAAGGCTCCAACTTCGCTGCGACGCTCGACATTGATTCTGTTCCCAATCCATTGTGCCGAAGCTAATCGATCCGAATATGAGTGTAAGTTCATCATCTGGACCTCAAATTTATATTCCTCATTACATTCCGATTCTAACATTCATCGATCTTCCGATTTTTGTATGCAGCCCGTTGATTCTAATCAGGCGAACCACGGTCTTCTCTGCCCCGAAGCTCCAATTCAAAGAACTCAGTACGATCTCTCTCTCTCTCTGTTTGTTTCTGTGGTTACTTTTTGGTGTTAGACTATACGTTTCGTATTCTAGAGCTGGGAATTTTAGGGTTCTAAAGACCTAAGATTCGAATTTAGAGTTAAGCAGTGAATGAATGGACAAATCGAGGTATTAAAATCGACTACTTCTTCTGTCTAATAGGTATCCCTATGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTTCTGATTTGGGAGGTCAGTCGAAAATCTTCTCCATTTTTATATTTCAACATCCAGTGAACTGTTCATTTTATTATGTTTCTCAGCATGTTTATCACTTTTTATTTGCTGATAACAAAACACTTCTGGAAGTGATGTTTCTTTCTTTATGTGATTTCGAATCTCTGATGTATGTATTGCCAAATTATAAGGCAAACCCGTCTGTATTACTTATATGGCGCTTTAACTAACTACAGGCTCCTATGGTTCCACACTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGAGCAAGCGGAGAAATTAGTGACTTTCAGGAGTTATTGAGAAATCTTGATGAGCTTATGTAAGCCTAAGATGTTTGCTTTATTCTATCTCTTTGATTTTGATGCTGTTCTGCATTGGAATTCAGTTGCTTGTTTCGTGCGTCTATTTTGATTTAGAACTTGAGTGAAATCTCTAATTGTATCGAATGGTGCAGCTTGTATGATAACATGTGGGATGATGGTAATGCTTTGGGGCCAAAGGAGATCCATAGCTACTTAACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCGCTTGTTCTCGGTGGGGTGAAGAACGGGCAAAAGTATCTTGGCACGGTAGATCTTTGGTTCTCTTCGCATTCATTAAAATAAGTTCCTAATATCCGTTCTAAAATAAGATGCTTCATCAGCTAACATTTAGCCACTTTTATTCAGGTTAATATGATAGGTGTAACTTTTGAAGATGATCATGTTACTACTGGCTTTGGCAATCACCTTGCACGACCAATTCTTCGTGATGAGTGGCACGAGAACCTGACTTTTGAAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTTCTCTTATACCGTGATAGATCGGCTGTCAACAAGCTCCAGGTTTGGATTTTTCTATGAGCTACCTTCATTGCTTTCTTTGCTATATATTTTGTGAGCGTGTGATTCTCGTCTGCGCGTATCGACAAATCTCATAAAATAGCCATCCAACACTAACATTTGATCTTCATAGAAACTCATTAGATTTTAAGATCATAAAGAGTTAGATCACTATGTGTTTCAGCCCATTCTAATAGCTACTTTCTAGTTTCTGGAACACATGTTTTGTTCACTGATTATAAGACTTCAATGTCTGGATGTTATTCTCATCATCACATACATTTGAATATGAAATTTACAGATTGCAAAAATAACTGAAGAAGGTGTGACAATCTCCCAACCCTACTCTTTGAAAACATTCTGGAACTACTCTGCTTTCGAGAATCCGACTTCGGGTGCTGAAGGGTCATGGTAGATTGAAGCTTCGTCGTTTATCCGAGATTCCATTTGGGTGAGTCGCAGTTTGGGGCGCAACAATTGATAGATCTAAGTTAGATGCATCTTAGATACTTCGCTCTTTGGATTTGTATGGAATCTCTACTTGAACTATCAACTATATCCAACTTGGGGAATGTTTGATTTGATTTTCTTGATATTATTATGATCACAACCGGTTGCTTTTCCATTATGAATCTGCCTACTCAATTGCTTGAACCCTTTGATTCACATGAAGTAAAGTTCAATCTAGTTTGTTGTGGGAAAAGCTCTGATTTGTGAGGTTGAAAGTTGAAACTAAATAGATCGAGACGTTATGCTGATACTTCGAAAGGAATTTGGATATCGACACTAATCCAAGTCCTAAACTACAATATGAGTAAACGACAGGTAAGAGTTCAGCTAGCATAATACAATAAGACATCAAATACTAAATCGAAAGTTTAAGTGAAAAAGAGATCTAATATTTTTGTTAACTAACATTACGAACATTCTCGTACCTCTAAAGGAGAAGATAGATGAGCTCGGGGCACCATTCTTCGCATTGTATATTCAAATCTTCGGCTTGCTCCGTAGAAGATATGATGCCGACACTGGAACTCGG CGACGACGTTTAGGGCCACTGCTGGGGAAAGAGAACGATCTGAACAAGAAAGATCATTTCTTGAGCGAAGGGAAACGAAGAGCTCTACTAAAGCAGTCGAAAGGCTCCAACTTCGCTGCGACGCTCGACATTGATTCTGTTCCCAATCCATTGTGCCGAAGCTAATCGATCCGAATATGAGTCCCGTTGATTCTAATCAGGCGAACCACGGTCTTCTCTGCCCCGAAGCTCCAATTCAAAGAACTCAGTATCCCTATGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTTCTGATTTGGGAGGCTCCTATGGTTCCACACTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGAGCAAGCGGAGAAATTAGTGACTTTCAGGAGTTATTGAGAAATCTTGATGAGCTTATCTTGTATGATAACATGTGGGATGATGGTAATGCTTTGGGGCCAAAGGAGATCCATAGCTACTTAACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCGCTTGTTCTCGGTGGGGTGAAGAACGGGCAAAAGTATCTTGGCACGGTTAATATGATAGGTGTAACTTTTGAAGATGATCATGTTACTACTGGCTTTGGCAATCACCTTGCACGACCAATTCTTCGTGATGAGTGGCACGAGAACCTGACTTTTGAAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTTCTCTTATACCGTGATAGATCGGCTGTCAACAAGCTCCAGATTGCAAAAATAACTGAAGAAGGTGTGACAATCTCCCAACCCTACTCTTTGAAAACATTCTGGAACTACTCTGCTTTCGAGAATCCGACTTCGGGTGCTGAAGGGTCATGGTAGATTGAAGCTTCGTCGTTTATCCGAGATTCCATTTGGGTGAGTCGCAGTTTGGGGCGCAACAATTGATAGATCTAAGTTAGATGCATCTTAGATACTTCGCTCTTTGGATTTGTATGGAATCTCTACTTGAACTATCAACTATATCCAACTTGGGGAATGTTTGATTTGATTTTCTTGATATTATTATGATCACAACCGGTTGCTTTTCCATTATGAATCTGCCTACTCAATTGCTTGAACCCTTTGATTCACATGAAGTAAAGTTCAATCTAGTTTGTTGTGGGAAAAGCTCTGATTTGTGAGGTTGAAAGTTGAAACTAAATAGATCGAGACGTTATGCTGATACTTCGAAAGGAATTTGGATATCGACACTAATCCAAGTCCTAAACTACAATATGAGTAAACGACAGGTAAGAGTTCAGCTAGCATAATACAATAAGACATCAAATACTAAATCGAAAGTTTAAGTGAAAAAGAGATCTAATATTTTTGTTAACTAACATTACGAACATTCTCGTACCTCTAAAGGAGAAGATAGATGAGCTCGGGGCACCATTCTTCGCATTGTATATTCAAATCTTCGGCTTGCTCCGTAGAAGATATGATGCCGACACTGGAACTCGG ATGAGTCCCGTTGATTCTAATCAGGCGAACCACGGTCTTCTCTGCCCCGAAGCTCCAATTCAAAGAACTCAGTATCCCTATGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTTCTGATTTGGGAGGCTCCTATGGTTCCACACTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGAGCAAGCGGAGAAATTAGTGACTTTCAGGAGTTATTGAGAAATCTTGATGAGCTTATCTTGTATGATAACATGTGGGATGATGGTAATGCTTTGGGGCCAAAGGAGATCCATAGCTACTTAACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCGCTTGTTCTCGGTGGGGTGAAGAACGGGCAAAAGTATCTTGGCACGGTTAATATGATAGGTGTAACTTTTGAAGATGATCATGTTACTACTGGCTTTGGCAATCACCTTGCACGACCAATTCTTCGTGATGAGTGGCACGAGAACCTGACTTTTGAAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTTCTCTTATACCGTGATAGATCGGCTGTCAACAAGCTCCAGATTGCAAAAATAACTGAAGAAGGTGTGACAATCTCCCAACCCTACTCTTTGAAAACATTCTGGAACTACTCTGCTTTCGAGAATCCGACTTCGGGTGCTGAAGGGTCATGGTAG MSPVDSNQANHGLLCPEAPIQRTQYPYVTGTSVVAIKYKDGILMVSDLGGSYGSTLRYKSVERIKAIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNALGPKEIHSYLTRVMYNRRNKFNPLWNSLVLGGVKNGQKYLGTVNMIGVTFEDDHVTTGFGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGVTISQPYSLKTFWNYSAFENPTSGAEGSW Homology
BLAST of Carg03251 vs. NCBI nr
Match: KAG7010616.1 (Proteasome subunit beta type-4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 506.9 bits (1304), Expect = 9.7e-140 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
BLAST of Carg03251 vs. NCBI nr
Match: XP_023512002.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 505.8 bits (1301), Expect = 2.2e-139 Identity = 244/245 (99.59%), Postives = 245/245 (100.00%), Query Frame = 0
BLAST of Carg03251 vs. NCBI nr
Match: XP_022986112.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 504.2 bits (1297), Expect = 6.3e-139 Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Carg03251 vs. NCBI nr
Match: XP_022948016.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita moschata] >XP_023532284.1 proteasome subunit beta type-4-like [Cucurbita pepo subsp. pepo] >KAG7035465.1 Proteasome subunit beta type-4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 503.8 bits (1296), Expect = 8.2e-139 Identity = 242/245 (98.78%), Postives = 245/245 (100.00%), Query Frame = 0
BLAST of Carg03251 vs. NCBI nr
Match: XP_022944642.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 503.8 bits (1296), Expect = 8.2e-139 Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy Swiss-Prot
Match: Q7DLR9 (Proteasome subunit beta type-4 OS=Arabidopsis thaliana OX=3702 GN=PBG1 PE=1 SV=2) HSP 1 Score: 415.2 bits (1066), Expect = 5.0e-115 Identity = 194/243 (79.84%), Postives = 220/243 (90.53%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy Swiss-Prot
Match: Q3T108 (Proteasome subunit beta type-4 OS=Bos taurus OX=9913 GN=PSMB4 PE=1 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.3e-54 Identity = 103/231 (44.59%), Postives = 160/231 (69.26%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy Swiss-Prot
Match: P99026 (Proteasome subunit beta type-4 OS=Mus musculus OX=10090 GN=Psmb4 PE=1 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 3.8e-54 Identity = 98/216 (45.37%), Postives = 153/216 (70.83%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy Swiss-Prot
Match: Q556Q0 (Proteasome subunit beta type-4 OS=Dictyostelium discoideum OX=44689 GN=psmB4-1 PE=3 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 5.0e-54 Identity = 102/213 (47.89%), Postives = 149/213 (69.95%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy Swiss-Prot
Match: P28070 (Proteasome subunit beta type-4 OS=Homo sapiens OX=9606 GN=PSMB4 PE=1 SV=4) HSP 1 Score: 211.5 bits (537), Expect = 1.1e-53 Identity = 97/214 (45.33%), Postives = 152/214 (71.03%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy TrEMBL
Match: A0A6J1J6N8 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111483953 PE=3 SV=1) HSP 1 Score: 504.2 bits (1297), Expect = 3.0e-139 Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy TrEMBL
Match: A0A6J1G834 (Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111451719 PE=3 SV=1) HSP 1 Score: 503.8 bits (1296), Expect = 4.0e-139 Identity = 242/245 (98.78%), Postives = 245/245 (100.00%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy TrEMBL
Match: A0A6J1FW56 (Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449042 PE=3 SV=1) HSP 1 Score: 503.8 bits (1296), Expect = 4.0e-139 Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy TrEMBL
Match: A0A5D3CQV9 (Proteasome subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00450 PE=3 SV=1) HSP 1 Score: 501.9 bits (1291), Expect = 1.5e-138 Identity = 241/245 (98.37%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Carg03251 vs. ExPASy TrEMBL
Match: A0A1S3CLV2 (Proteasome subunit beta OS=Cucumis melo OX=3656 GN=LOC103501933 PE=3 SV=1) HSP 1 Score: 501.9 bits (1291), Expect = 1.5e-138 Identity = 241/245 (98.37%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Carg03251 vs. TAIR 10
Match: AT1G56450.1 (20S proteasome beta subunit G1 ) HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-116 Identity = 194/243 (79.84%), Postives = 220/243 (90.53%), Query Frame = 0
BLAST of Carg03251 vs. TAIR 10
Match: AT5G40580.1 (20S proteasome beta subunit PBB2 ) HSP 1 Score: 56.6 bits (135), Expect = 3.2e-08 Identity = 43/186 (23.12%), Postives = 89/186 (47.85%), Query Frame = 0
BLAST of Carg03251 vs. TAIR 10
Match: AT5G40580.2 (20S proteasome beta subunit PBB2 ) HSP 1 Score: 56.6 bits (135), Expect = 3.2e-08 Identity = 43/186 (23.12%), Postives = 89/186 (47.85%), Query Frame = 0
BLAST of Carg03251 vs. TAIR 10
Match: AT3G27430.1 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ) HSP 1 Score: 55.5 bits (132), Expect = 7.2e-08 Identity = 44/186 (23.66%), Postives = 89/186 (47.85%), Query Frame = 0
BLAST of Carg03251 vs. TAIR 10
Match: AT3G27430.2 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ) HSP 1 Score: 55.5 bits (132), Expect = 7.2e-08 Identity = 44/186 (23.66%), Postives = 89/186 (47.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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