Carg02646 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02646
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 7636652 .. 7640140 (-)
RNA-Seq ExpressionCarg02646
SyntenyCarg02646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTAAGCTCATCTGCGGGACTTCCAAATCGAAGGATGGATTCAGCAGCTTTGCACCACAGAATCTTAACATACAATACCATGTTCATAAAGCTGCAAACTTTCTAGATTTGTCCCTGTAAATTCTTCTCCTTTGGTTGCAGTATGTGTGCAATTGCTCTTGGGAAAGCTCGTCGCGTTGTACTTTTGCAACTGACTATTTGTTTATCTTTATTATTTTCATTTTGTAAATTGCTTGATATTTGTTGCCATGTCTTATTTGAATTGAAGATTTTGCTATTTCAAAGGTCATTTTCCCCTTTTCTTGCCTCCGGTTTGAATAGATTGACTGTACCACATGCAACCTGACTTGGAGTCAACTTCTTTTTTATCCTATAATTGCAGTGTAAAGGGGCTTAAAGCATGGAAAACCGTTGGACCGATCTCCTTGGTCTGTGGTGCGAACCGCTCCAAAAAGACCAAATAAGACGTAAATCGGTCCAGTCGGTTCTCTCTTTCAGAGAAGAAGGCTTCACTTTGCGTTGCGCTGTAGAGATCCCTTTTGGTAGCGTTTCATTTCAATTTCTTCTACACTTTTATTTATTGCACGCTCACTTTCGCCATCTGAAAAGTCAAATTACTTCCATAACCCTTATCCAATTTTCCTTCTCTTAGTTGACTCTCATGAATTACTTTTTTTTAGTTACTTCAGTTCTCTGAGTAGAAGCTGAAAATGAACGCTGACTCTTTCTTTGTATTCAACTCACAGTCCTCATGAATTTTCCCTAATCTGCAGCTTTAATCTTGCCCTAATCTGTATCAGTGTGTATTATTTTTCTTCTAATATTCAGCTTAAATCTTGCCCTAACCTGAAGGCCTGATATTTTCATATGTACTATAGAGATCTTCTGTCAGGATCCAATTGATGACGTTCTAGAGGATTTCAGTGAAAGGATCATAAATTGTCCCCATCAGCAGAGGAGGAATTTCATGGAGAGAAGGTTTTGAGTTTATCCTTGTAGAAAATTTCACTCTTAGTCTTAACTTTATTCTGTCTGGTTTCTTTTGATGTGATTGTAATTCTCCCCATATCCACTTTTATTATTTTGCTCAACTACTCCATGGAATGTATACATGTTGAAAAGACTAACATTATCTTTTTCTAGGTGTTTGGACTTTCCACTTGAAGAAACTAAGGATGTGGACTGGTGGCATTGCTTCAAAAACACATTTGGTTGTTGGTAATATGATGTTGATATTCAGCCACCTAATTAATAGATATATTATTTTGTTAATGTGGGATCCATCATACTTATGTAGTTGAATGGACAGTATCTACTACTACGGTTACATTGGAAAATTTTCCACAGCCCCAAGTATTATCTTTCATGGGGAAGAGGATGAAGGCGAGGAAGATAGATCAGGGATATGTTGCGGCCACTGATATAAATAAGGTAGCCCTTTCTACTTGAAAGATCCTTTCTTGTTTTTGATATGTGTTTTGGATGGAGAGCATATATGATTCCCCTCAAATGCATTTTTTATTGTGCTACGTTGATTCAGTGGTGAGAATTTTTCATTAGAAACCAAAACTTATTTTTATGTTTGTTTTAACGAATAACAATGTGTATGTGTATCAGAAAAGGTATATCAGAGCTTGTCACAGGGCATTCTTTATAGTCGAGCTTTTAACTTGTTTTATGAGGTAAAACATTCACAGATGTACATCTTCATTGCTAGGATATCATTTATTTATTTTTTTTTTTAAAAAAGAAAATTTGCGTTTAACAATTACAAAAATGAGAGATCAAATCATTGACTTATGAAGAGGTAAAAGTGTCTTATCTACAAAAACTAAGCTAATTTTTATTTCAAATTGTGTTTTAGGCCAACATCTCAAATACAGACCTTTGCACCCAATAGTGAAAGCTGTAATATACGGTATGAAGATTAATTTTCTAAGAACATCTCTATTTGTCAATTTGTTGGATGGTTGATCTGAACTTTTGAATATCACTATTTACGAATTTACAACAAGTATTTAGTCCTCCAATATTTTCCTACATAGACAAAAACCACTTTTGCAGATAACATGTCGTGGTTTACAAAATTGTCCTAGAATCATAATCTCCAACAAAGATAAAGTTAAGGGACATGTTACCAAATGCATTTTCCAACTGTCACAAATTATTGCCCAAGAAAGGTTTTTCTGGAGGAACCAATATTAATATTCCTCATGAGTTATGTCAATACCTATCCACTTTACTGATATGACCGGTGATTATCCAAGTGCCAAAACCTATGGGCTATGCCGAGATGAATTTCAAGTTAAACGTGTATTTTTATGTGGAAATTCTTAATTGTTAAGCTTGTACTTGGCCCGCATATTAGCTACTAGAGCTTAGGTGAAAGAATTGCTTGGTTAATGGGACAGGTGTTTCAGGCAACTTGGAAAATCACATATCTTTTAGTTAGGTCCGTTGTATTCTAATAATGTATGTTGATGTGACCTGCAGAATACCATTTTAGGATGGGAGTGTTAGGGAGAAGTCCTTTCGGCTGTTACACTCCTTGCTTTTGATATAACGCTCCATGTCCAAGATTAGGGTTAAGATCTAGAGTCTGGATTTGATACTTGACAACCTTGACTATCATTACAGACCAATACGAGTCTTTTTATCATGTCTCTCACGCTTTCTAGTAAAATTATCAAAAGGTTATCCAACATAGTATTGCTCCAAGCAAAACACGCTTAAGTTGAAGTTTTTTGTTTGTTGCTCAATCATTGAAACTCCAAAGGTACGTACGTTTGGATTTGAGTAATCCTACGTTGGAGCAACCCCAAAGTCCACTTTGAATCAAGAATATCCTACTGTGAATCCATAGGCTGGGCGTTGACATGTTCCACAACAAAAAATTCCTTGCCACACAAGTTGTGTCACTGCGTTTGTTCAATCGGGTTGCTAAAGCAACTCGTATGATTTTGATTACAAGGAATGAACGTTTCAAGAGAGTTGGAAACAAGAACAACAAAAAGTGTTTTTTTTCGAACATTGGTGGGGAAGGACATCGCACGTGTTGTGATGGACAAGCTCTATTAACTTTCTCTCATCGTGAATGACGAACTAGTCGATCTTAACAAATCAGAACATCTCTCCCTATTAGTCTCACAATTCTATTGCCTCTTTTCGTCTCTTCTCCAGGAACTTCTAGTCGAGGAAAAAGATTCACAGAAAAGAATTCATGAACCACATCTTTCCCACCTATATTCTTTTTCTTTCATCCTGCCTATATCATTTTAGACTGATAAATACGATTGACTAGAATTGAAGTCTATATAGTCTAATTTAGCCAATATTTTTATAAAATAGATGAGTGATCAGAGTTTAGATTAAAATAGAACACATTCTACTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTAATAAGAGAATTAGTGGGTCAAGTGATACCATTTGTAATGACTTTGACATCTTTCATGAACTAA

mRNA sequence

ATGGATTTTAAGCTCATCTGCGGGACTTCCAAATCGAAGGATGGATTCAGCAGCTTTGCACCACAGAATCTTAACATACAATACCATGTTCATAAAGCTGCAAACTTTCTAGATTTGTCCCTTGTAAAGGGGCTTAAAGCATGGAAAACCGTTGGACCGATCTCCTTGGATCCAATTGATGACGTTCTAGAGGATTTCAGTGAAAGGATCATAAATTGTCCCCATCAGCAGAGGAGGAATTTCATGGAGAGAAGGCCAACATCTCAAATACAGACCTTTGCACCCAATAGTGAAAGCTGTAATATACGAGAATTAGTGGGTCAAGTGATACCATTTGTAATGACTTTGACATCTTTCATGAACTAA

Coding sequence (CDS)

ATGGATTTTAAGCTCATCTGCGGGACTTCCAAATCGAAGGATGGATTCAGCAGCTTTGCACCACAGAATCTTAACATACAATACCATGTTCATAAAGCTGCAAACTTTCTAGATTTGTCCCTTGTAAAGGGGCTTAAAGCATGGAAAACCGTTGGACCGATCTCCTTGGATCCAATTGATGACGTTCTAGAGGATTTCAGTGAAAGGATCATAAATTGTCCCCATCAGCAGAGGAGGAATTTCATGGAGAGAAGGCCAACATCTCAAATACAGACCTTTGCACCCAATAGTGAAAGCTGTAATATACGAGAATTAGTGGGTCAAGTGATACCATTTGTAATGACTTTGACATCTTTCATGAACTAA

Protein sequence

MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPIDDVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFMN
Homology
[Close]
BLAST of Carg02646 vs. NCBI nr
Match: KAG7035925.1 (hypothetical protein SDJN02_02725, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 4.7e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPID 60
           MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPID
Sbjct: 1   MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPID 60

Query: 61  DVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFM 120
           DVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFM
Sbjct: 61  DVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFM 120

Query: 121 N 122
           N
Sbjct: 121 N 121

The following BLAST results are available for this feature:
BLAST of Carg02646 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035925.14.7e-63100.00hypothetical protein SDJN02_02725, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg02646 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02646 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02646 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02646-RACarg02646-RAmRNA