Carg02646 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02646
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 7636652 .. 7640140 (-)
RNA-Seq Expression	Carg02646
Synteny	Carg02646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTAAGCTCATCTGCGGGACTTCCAAATCGAAGGATGGATTCAGCAGCTTTGCACCACAGAATCTTAACATACAATACCATGTTCATAAAGCTGCAAACTTTCTAGATTTGTCCCTGTAAATTCTTCTCCTTTGGTTGCAGTATGTGTGCAATTGCTCTTGGGAAAGCTCGTCGCGTTGTACTTTTGCAACTGACTATTTGTTTATCTTTATTATTTTCATTTTGTAAATTGCTTGATATTTGTTGCCATGTCTTATTTGAATTGAAGATTTTGCTATTTCAAAGGTCATTTTCCCCTTTTCTTGCCTCCGGTTTGAATAGATTGACTGTACCACATGCAACCTGACTTGGAGTCAACTTCTTTTTTATCCTATAATTGCAGTGTAAAGGGGCTTAAAGCATGGAAAACCGTTGGACCGATCTCCTTGGTCTGTGGTGCGAACCGCTCCAAAAAGACCAAATAAGACGTAAATCGGTCCAGTCGGTTCTCTCTTTCAGAGAAGAAGGCTTCACTTTGCGTTGCGCTGTAGAGATCCCTTTTGGTAGCGTTTCATTTCAATTTCTTCTACACTTTTATTTATTGCACGCTCACTTTCGCCATCTGAAAAGTCAAATTACTTCCATAACCCTTATCCAATTTTCCTTCTCTTAGTTGACTCTCATGAATTACTTTTTTTTAGTTACTTCAGTTCTCTGAGTAGAAGCTGAAAATGAACGCTGACTCTTTCTTTGTATTCAACTCACAGTCCTCATGAATTTTCCCTAATCTGCAGCTTTAATCTTGCCCTAATCTGTATCAGTGTGTATTATTTTTCTTCTAATATTCAGCTTAAATCTTGCCCTAACCTGAAGGCCTGATATTTTCATATGTACTATAGAGATCTTCTGTCAGGATCCAATTGATGACGTTCTAGAGGATTTCAGTGAAAGGATCATAAATTGTCCCCATCAGCAGAGGAGGAATTTCATGGAGAGAAGGTTTTGAGTTTATCCTTGTAGAAAATTTCACTCTTAGTCTTAACTTTATTCTGTCTGGTTTCTTTTGATGTGATTGTAATTCTCCCCATATCCACTTTTATTATTTTGCTCAACTACTCCATGGAATGTATACATGTTGAAAAGACTAACATTATCTTTTTCTAGGTGTTTGGACTTTCCACTTGAAGAAACTAAGGATGTGGACTGGTGGCATTGCTTCAAAAACACATTTGGTTGTTGGTAATATGATGTTGATATTCAGCCACCTAATTAATAGATATATTATTTTGTTAATGTGGGATCCATCATACTTATGTAGTTGAATGGACAGTATCTACTACTACGGTTACATTGGAAAATTTTCCACAGCCCCAAGTATTATCTTTCATGGGGAAGAGGATGAAGGCGAGGAAGATAGATCAGGGATATGTTGCGGCCACTGATATAAATAAGGTAGCCCTTTCTACTTGAAAGATCCTTTCTTGTTTTTGATATGTGTTTTGGATGGAGAGCATATATGATTCCCCTCAAATGCATTTTTTATTGTGCTACGTTGATTCAGTGGTGAGAATTTTTCATTAGAAACCAAAACTTATTTTTATGTTTGTTTTAACGAATAACAATGTGTATGTGTATCAGAAAAGGTATATCAGAGCTTGTCACAGGGCATTCTTTATAGTCGAGCTTTTAACTTGTTTTATGAGGTAAAACATTCACAGATGTACATCTTCATTGCTAGGATATCATTTATTTATTTTTTTTTTTAAAAAAGAAAATTTGCGTTTAACAATTACAAAAATGAGAGATCAAATCATTGACTTATGAAGAGGTAAAAGTGTCTTATCTACAAAAACTAAGCTAATTTTTATTTCAAATTGTGTTTTAGGCCAACATCTCAAATACAGACCTTTGCACCCAATAGTGAAAGCTGTAATATACGGTATGAAGATTAATTTTCTAAGAACATCTCTATTTGTCAATTTGTTGGATGGTTGATCTGAACTTTTGAATATCACTATTTACGAATTTACAACAAGTATTTAGTCCTCCAATATTTTCCTACATAGACAAAAACCACTTTTGCAGATAACATGTCGTGGTTTACAAAATTGTCCTAGAATCATAATCTCCAACAAAGATAAAGTTAAGGGACATGTTACCAAATGCATTTTCCAACTGTCACAAATTATTGCCCAAGAAAGGTTTTTCTGGAGGAACCAATATTAATATTCCTCATGAGTTATGTCAATACCTATCCACTTTACTGATATGACCGGTGATTATCCAAGTGCCAAAACCTATGGGCTATGCCGAGATGAATTTCAAGTTAAACGTGTATTTTTATGTGGAAATTCTTAATTGTTAAGCTTGTACTTGGCCCGCATATTAGCTACTAGAGCTTAGGTGAAAGAATTGCTTGGTTAATGGGACAGGTGTTTCAGGCAACTTGGAAAATCACATATCTTTTAGTTAGGTCCGTTGTATTCTAATAATGTATGTTGATGTGACCTGCAGAATACCATTTTAGGATGGGAGTGTTAGGGAGAAGTCCTTTCGGCTGTTACACTCCTTGCTTTTGATATAACGCTCCATGTCCAAGATTAGGGTTAAGATCTAGAGTCTGGATTTGATACTTGACAACCTTGACTATCATTACAGACCAATACGAGTCTTTTTATCATGTCTCTCACGCTTTCTAGTAAAATTATCAAAAGGTTATCCAACATAGTATTGCTCCAAGCAAAACACGCTTAAGTTGAAGTTTTTTGTTTGTTGCTCAATCATTGAAACTCCAAAGGTACGTACGTTTGGATTTGAGTAATCCTACGTTGGAGCAACCCCAAAGTCCACTTTGAATCAAGAATATCCTACTGTGAATCCATAGGCTGGGCGTTGACATGTTCCACAACAAAAAATTCCTTGCCACACAAGTTGTGTCACTGCGTTTGTTCAATCGGGTTGCTAAAGCAACTCGTATGATTTTGATTACAAGGAATGAACGTTTCAAGAGAGTTGGAAACAAGAACAACAAAAAGTGTTTTTTTTCGAACATTGGTGGGGAAGGACATCGCACGTGTTGTGATGGACAAGCTCTATTAACTTTCTCTCATCGTGAATGACGAACTAGTCGATCTTAACAAATCAGAACATCTCTCCCTATTAGTCTCACAATTCTATTGCCTCTTTTCGTCTCTTCTCCAGGAACTTCTAGTCGAGGAAAAAGATTCACAGAAAAGAATTCATGAACCACATCTTTCCCACCTATATTCTTTTTCTTTCATCCTGCCTATATCATTTTAGACTGATAAATACGATTGACTAGAATTGAAGTCTATATAGTCTAATTTAGCCAATATTTTTATAAAATAGATGAGTGATCAGAGTTTAGATTAAAATAGAACACATTCTACTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTAATAAGAGAATTAGTGGGTCAAGTGATACCATTTGTAATGACTTTGACATCTTTCATGAACTAA

mRNA sequence

ATGGATTTTAAGCTCATCTGCGGGACTTCCAAATCGAAGGATGGATTCAGCAGCTTTGCACCACAGAATCTTAACATACAATACCATGTTCATAAAGCTGCAAACTTTCTAGATTTGTCCCTTGTAAAGGGGCTTAAAGCATGGAAAACCGTTGGACCGATCTCCTTGGATCCAATTGATGACGTTCTAGAGGATTTCAGTGAAAGGATCATAAATTGTCCCCATCAGCAGAGGAGGAATTTCATGGAGAGAAGGCCAACATCTCAAATACAGACCTTTGCACCCAATAGTGAAAGCTGTAATATACGAGAATTAGTGGGTCAAGTGATACCATTTGTAATGACTTTGACATCTTTCATGAACTAA

Coding sequence (CDS)

ATGGATTTTAAGCTCATCTGCGGGACTTCCAAATCGAAGGATGGATTCAGCAGCTTTGCACCACAGAATCTTAACATACAATACCATGTTCATAAAGCTGCAAACTTTCTAGATTTGTCCCTTGTAAAGGGGCTTAAAGCATGGAAAACCGTTGGACCGATCTCCTTGGATCCAATTGATGACGTTCTAGAGGATTTCAGTGAAAGGATCATAAATTGTCCCCATCAGCAGAGGAGGAATTTCATGGAGAGAAGGCCAACATCTCAAATACAGACCTTTGCACCCAATAGTGAAAGCTGTAATATACGAGAATTAGTGGGTCAAGTGATACCATTTGTAATGACTTTGACATCTTTCATGAACTAA

Protein sequence

MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPIDDVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFMN

Homology

[Close]

BLAST of Carg02646 vs. NCBI nr
Match: KAG7035925.1 (hypothetical protein SDJN02_02725, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 4.7e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPID 60
           MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPID
Sbjct: 1   MDFKLICGTSKSKDGFSSFAPQNLNIQYHVHKAANFLDLSLVKGLKAWKTVGPISLDPID 60

Query: 61  DVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFM 120
           DVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFM
Sbjct: 61  DVLEDFSERIINCPHQQRRNFMERRPTSQIQTFAPNSESCNIRELVGQVIPFVMTLTSFM 120

Query: 121 N 122
           N
Sbjct: 121 N 121

The following BLAST results are available for this feature:

BLAST of Carg02646 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035925.1	4.7e-63	100.00	hypothetical protein SDJN02_02725, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg02646 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02646 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02646 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02646-RA	Carg02646-RA	mRNA