Carg01023 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01023
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr06: 1602329 .. 1604968 (+)
RNA-Seq ExpressionCarg01023
SyntenyCarg01023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAATGCGAAGCCCACTAGCCTTCAAATCTCAGTTCCCGCCAGCGCCCTTTATCCATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGCGCCTATGGCCGCTTCATCCAGCACGTACCGGCTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGGTCATCGCCTTCTAATCAAAATCTGGCAGCCTTGGAGATGCCTACAATGTGTTCGGTAACATTTCTCACGAGAACATTTTATCTTGGAATGCTTTTTTTTTTTATGAGTTACACTTTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGGTTACTTGTGTTTTGAAAGCGTTGGCGTTGTTGTTTTCTAATTTGATTTTGGCAATGGAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCAGCTTTTTGTGTCTATGCTCTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAATTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTCGAATGCGATGTTGGCTGAGTACTCTCAGGGTTGGTTTTATGTGGAATGCAAGGAACTATTTAAAGAGATGTTGAGTTTAGTGGAGTTGAGGCCTAATGCAGTGACTGCTGTCATTGTTTTACAAGCTTGTGCTCAGTCAAATTATCTCATTTTTGGAATGGAAGTTCGTTGATTCTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACACCTCCCCTCGAACAAAGCACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCCCTTAATTGAGGCTCGACTCCTTTTTCTGGAGCCCTCGAACAAAGTACACCATTTGTTCGACACTTTAGTCACTTTTGACTACACTTTCGAGGCTCGCCATTCTTTGTTCGATATTTGAGGATTCTATTGGCATGGTTAGGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACAGATTCGTCAATGAACGTCAGGTTGAAGTGGATGTTTCATTATGTAATGCTGTTATTGGATTATATGCAAAAAGTGCGGTAGCTTGGATTATGTTTGGGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACATTGCGCGATGATATCGGACTACATGGTCCATGGTTTTGTTAACCAAGCAATAGATCTCTTTCCGAGTACTGAAAATGCCAGCATTGAGCAGATGTAATTGTTGAGGATCGTTGGAAGGGAATCCCACGTCGACTAATTAAGGAGATGATCATGGATTTATAAGTAAGAAATACGTCTCCGTTGGTACGAGGCCTTTTGAAAAAACCAAAAATAAAATCATGAGAGCTTATGCTATTCATCTTAGATCAATTTAGTCACTTGATTGATGTTTTTTCTATTCATTTTAGATCAATTTATGCTCAAAGTGGACAATACCATACCATTGTGGAGTGCCGTTGTTCCAAATAGTAATGCTGTGATTTTTGATCTGGTTCAGAGCAACCAATAAACTCGACTTGTAGATATATTTTGAGCAATGCAGTTGGATGGTTGCAGACCGAATACTATGACACTTGCGAGCGTTCTTCCCACCTTCTCACATTTTGCAACACCAAGGATGGGTAAGAAATTCATGCTTATGCCGTTAGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCAGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGTTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGATGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

mRNA sequence

ATGACGAATGCGAAGCCCACTAGCCTTCAAATCTCAGTTCCCGCCAGCGCCCTTTATCCATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGCGCCTATGGCCGCTTCATCCAGCACGTACCGGCTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGGTCATCGCCTTCTAATCAAAATCTGGCAGCCTTGGAGATGCCTACAATGTGTTCGTTACACTTTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCAGCTTTTTGTGTCTATGCTCTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAATTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTCGAATGCGATAAATGCCTGAGAAGGATGAGGTCACATTGCGCGATGATATCGGACTACATGACCGAATACTATGACACTTGCGAGCGTTCTTCCCACCTTCTCACATTTTGCAACACCAAGGATGGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCAGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGTTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGATGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

Coding sequence (CDS)

ATGACGAATGCGAAGCCCACTAGCCTTCAAATCTCAGTTCCCGCCAGCGCCCTTTATCCATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGCGCCTATGGCCGCTTCATCCAGCACGTACCGGCTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGGTCATCGCCTTCTAATCAAAATCTGGCAGCCTTGGAGATGCCTACAATGTGTTCGTTACACTTTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCAGCTTTTTGTGTCTATGCTCTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAATTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTCGAATGCGATAAATGCCTGAGAAGGATGAGGTCACATTGCGCGATGATATCGGACTACATGACCGAATACTATGACACTTGCGAGCGTTCTTCCCACCTTCTCACATTTTGCAACACCAAGGATGGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCAGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGTTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGATGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

Protein sequence

MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSASATASRSSCSMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPDKFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCAMISDYMTEYYDTCERSSHLLTFCNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG
Homology
BLAST of Carg01023 vs. NCBI nr
Match: KAG7027978.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 830.9 bits (2145), Expect = 4.8e-237
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0

Query: 1   MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSASATASRSSC 60
           MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSASATASRSSC
Sbjct: 1   MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSASATASRSSC 60

Query: 61  SMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPD 120
           SMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPD
Sbjct: 61  SMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPD 120

Query: 121 KFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCA 180
           KFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCA
Sbjct: 121 KFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCA 180

Query: 181 MISDYMTEYYDTCERSSHLLTFCNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQ 240
           MISDYMTEYYDTCERSSHLLTFCNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQ
Sbjct: 181 MISDYMTEYYDTCERSSHLLTFCNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQ 240

Query: 241 FKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAW 300
           FKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAW
Sbjct: 241 FKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAW 300

Query: 301 KIFNVLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASV 360
           KIFNVLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASV
Sbjct: 301 KIFNVLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASV 360

Query: 361 AGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG 403
           AGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG
Sbjct: 361 AGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG 402

BLAST of Carg01023 vs. NCBI nr
Match: KAG6596437.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.7 bits (992), Expect = 2.4e-103
Identity = 204/278 (73.38%), Postives = 215/278 (77.34%), Query Frame = 0

Query: 133 LSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKC---LRRMRSHCAMISD----- 192
           L +  +C C    G + ++ ++ F+ MP +D V   D      + + S C  I       
Sbjct: 65  LEMPTMCSC----GSLDYVWEL-FEEMPEKDEVTLRDDIGLHEQPINSTCRYILSNAVGW 124

Query: 193 YMTEYYDTCERSSHLLTFCNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGR 252
             TEYYDTCERSSHLLTFCNTKDG                         ARLVCDQFKGR
Sbjct: 125 LQTEYYDTCERSSHLLTFCNTKDG-------------------------ARLVCDQFKGR 184

Query: 253 SLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFN 312
           SLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFN
Sbjct: 185 SLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFN 244

Query: 313 VLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDV 372
           VLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDV
Sbjct: 245 VLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDV 304

Query: 373 ELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG 403
           ELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG
Sbjct: 305 ELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG 312

BLAST of Carg01023 vs. NCBI nr
Match: XP_022145703.1 (pentatricopeptide repeat-containing protein At2g37310 [Momordica charantia])

HSP 1 Score: 337.0 bits (863), Expect = 2.2e-88
Identity = 239/588 (40.65%), Postives = 281/588 (47.79%), Query Frame = 0

Query: 10  QISVPASALYPWVLQAIRRNDGMNYGAYGRFIQH----------------VPASSSSASA 69
           QIS+PA A+ PW LQAIRR DGMNY AYGR IQH                +   S +   
Sbjct: 3   QISIPAGAVIPWALQAIRRADGMNYAAYGRLIQHCADRRFLRLGKQLHARLVLLSVTPDN 62

Query: 70  TASRSSCSMFCRS---REFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLF 129
                  + + +S   R+   + G+     I+  W  L  + YT HNM SDMLKLF SL 
Sbjct: 63  FLGSKLIAFYSKSGSLRDAYNVFGNISHKNIFS-WNAL-FISYTLHNMHSDMLKLFSSLV 122

Query: 130 NLISMDAKPDKFKFIV-------SFFDEGLSLSFLC------LCSD---TRGVISW---- 189
           N  +MD KPDKF           SF D  L+    C      L SD      ++++    
Sbjct: 123 NSNAMDVKPDKFTITCVLKALASSFTDSILAKEVHCFVLRRGLESDIFVVNALVTYYSRC 182

Query: 190 ----LAKIVFDRMPARDIVF---------------ECDKCLRRMRSHCAMISDYMT--EY 249
               LA+IVF RMP RDIV                EC +  + M S   +  + +T    
Sbjct: 183 EEVVLARIVFGRMPERDIVSWNAMVAGFSQGGFYEECKELFKEMLSSVELKPNALTAVSV 242

Query: 250 YDTCERSSHLL------------------TFCNT-------------------------- 309
              C +S+ L+                  + CN                           
Sbjct: 243 LQACAQSNDLIFGMEVHRFVNESQIEMDVSLCNAVIGLYAKCGSLDYARELFEEMPEKDE 302

Query: 310 ----------------------------------------------KDG----------- 369
                                                         +DG           
Sbjct: 303 VTYGSMISGYMVHGSVNQAMDLFQELKKPALSTWNAVISGLVQNNQQDGVLDIFRAMQSH 362

Query: 370 ----------------------------------NGYDGNVCVVTAIIDSYAKSGYLHRA 402
                                             NGY+GN+ V TAIIDSYAKSGYLH A
Sbjct: 363 GCRPNAVTLASVLPVFSHFSTLKGGKEIHAYAVRNGYNGNIYVATAIIDSYAKSGYLHGA 422

BLAST of Carg01023 vs. NCBI nr
Match: XP_023539538.1 (pentatricopeptide repeat-containing protein At2g37310-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-87
Identity = 211/407 (51.84%), Postives = 238/407 (58.48%), Query Frame = 0

Query: 1   MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSASATASRSSC 60
           MTNAKPTSLQISVPASALYPW LQAIRR+DGMNYGAYGRFIQ  P SSSSASATASRSSC
Sbjct: 1   MTNAKPTSLQISVPASALYPWSLQAIRRDDGMNYGAYGRFIQLAPTSSSSASATASRSSC 60

Query: 61  SMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPD 120
           SMFCRSREFPRIE     I  W      +C +  F+    ++ K  LSL  L     +P+
Sbjct: 61  SMFCRSREFPRIEECLREILSWNA-MVAECSQGWFYGECKELYKAMLSLVEL-----RPN 120

Query: 121 KFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCA 180
               ++        L++L L  +  G + ++ ++ F+ MP +D V           ++ A
Sbjct: 121 ALTAVI-VLQACAQLNYLILGMEC-GSLDYVWEL-FEEMPEKDEV-----------TYGA 180

Query: 181 MISDYMT---------EYYDT-----CERSSHLLT--------FCNTKDG---------N 240
           MISDYM           Y  +     C  ++  L         F   KDG         N
Sbjct: 181 MISDYMVHEQPISWSCRYISSNAVHGCRPNTVTLASVLPIFSHFSTLKDGKEIHAYAVRN 240

Query: 241 GYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFF 300
            YDGNVCVVTAIIDSYAKSGY HRARLVCDQFK                           
Sbjct: 241 CYDGNVCVVTAIIDSYAKSGYFHRARLVCDQFK--------------------------- 300

Query: 301 YEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLA 360
                                   GELDEAWKIFNVLLPEYGIQPL+EHYACMVGVLS A
Sbjct: 301 ------------------------GELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSPA 336

Query: 361 EKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLD 377
           EK SDAVDFISKMPIEPTTKVW ALLNGASVAGDVELGKCVFDSLL+
Sbjct: 361 EKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLE 336

BLAST of Carg01023 vs. NCBI nr
Match: KAG6580575.1 (ABC transporter G family member 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.9 bits (834), Expect = 5.0e-85
Identity = 234/574 (40.77%), Postives = 267/574 (46.52%), Query Frame = 0

Query: 23   LQAIRRNDGMNYGAYGRFIQHVPASS--------------SSASATASRSSCSMFCRSRE 82
            LQ IRR+DGMNYGAYGR IQH                   SS +      S  +   S+ 
Sbjct: 720  LQLIRRSDGMNYGAYGRLIQHCTDQRFFRLGKQLHARLVLSSVAPDNFLGSKLIALYSKS 779

Query: 83   FPRIEGHRLLIKIWQ----PWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPDKF-- 142
                + + +   I       W  L  + YT HNM +DMLKLF SL NL S D KPDKF  
Sbjct: 780  GSLRDAYNVFDSISHKNIFSWNAL-FISYTLHNMHADMLKLFSSLVNLNSTDVKPDKFTV 839

Query: 143  ----KFIVSFFDEGLSLSFLCLCSDTRGVIS------------------WLAKIVFDRMP 202
                K + S F   +    +      RG+ S                   LA+I+FDR P
Sbjct: 840  TCVLKALASLFTNSILAKEVHCFVLRRGLESDIFVVNALITFYSRCDELVLARIMFDRTP 899

Query: 203  ARDIVF---------------ECDKCLRRMR----------------------------- 262
             RDIV                +C +  + M                              
Sbjct: 900  ERDIVSWNAMVAGYSQGGFYEDCKELFKAMLGSGEPKPNALTAVSVLQACAQSNDLIFGM 959

Query: 263  -----------------------------------------------SHCAMISDYMT-- 322
                                                           ++ +MIS YM   
Sbjct: 960  EVHKFVNESGIEMDVSLFNAVIGLYAKCGSLDYARELFEGMPEKDEVTYGSMISGYMVHG 1019

Query: 323  ------EYYDTCERS--------------------------------------------- 382
                  + +   ER                                              
Sbjct: 1020 FVNQAMDLFRELERPALSTWNAVISGLVQNNQQDGVVDIFRAMQLHGCRPNTVTLASVLP 1079

Query: 383  --SHLLTFCNTKD------GNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLII 402
              SH  T    K+       N YDGN+ V TAIIDSYAKSGYLH AR V DQ K RSLII
Sbjct: 1080 IFSHFSTLKGGKEIHAYAVRNAYDGNIYVATAIIDSYAKSGYLHGARQVFDQSKRRSLII 1139

BLAST of Carg01023 vs. ExPASy Swiss-Prot
Match: Q9ZUT5 (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.0e-53
Identity = 107/194 (55.15%), Postives = 136/194 (70.10%), Query Frame = 0

Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           NG D N+ V T+IID+YAK G+L  A+ V D  K RSLI WTAII+AYA +G ++ A S 
Sbjct: 395 NGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSL 454

Query: 269 FYEILTNGIRPDSVAFTPVCSC-AHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           F ++   G +PD V  T V S  AHSG+ D A  IF+ +L +Y I+P +EHYACMV VLS
Sbjct: 455 FDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLS 514

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDA++FISKMPI+P  KVW ALLNGASV GD+E+ +   D L + EPENTGN  I
Sbjct: 515 RAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTI 574

Query: 389 MDNLYSLFGRWKKS 402
           M NLY+  GRW+++
Sbjct: 575 MANLYTQAGRWEEA 588

BLAST of Carg01023 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-36
Identity = 73/192 (38.02%), Postives = 115/192 (59.90%), Query Frame = 0

Query: 210 GYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFF 269
           G+  N+ + +A++D Y+K G +  AR + D+      + WTAII  +A +G  + A+S F
Sbjct: 373 GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432

Query: 270 YEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSL 329
            E+   G++P+ VAF  V  +C+H G +DEAW  FN +   YG+   +EHYA +  +L  
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGR 492

Query: 330 AEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIM 389
           A K  +A +FISKM +EPT  VW  LL+  SV  ++EL + V + +   + EN G  ++M
Sbjct: 493 AGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLM 552

Query: 390 DNLYSLFGRWKK 401
            N+Y+  GRWK+
Sbjct: 553 CNMYASNGRWKE 564

BLAST of Carg01023 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-36
Identity = 68/186 (36.56%), Postives = 113/186 (60.75%), Query Frame = 0

Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           NV V +A+ID YAK G ++ +++V +    ++L+ W ++++ ++ +G A   +S F  ++
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 274 TNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
              ++PD ++FT + S C   G  DE WK F ++  EYGI+P +EHY+CMV +L  A K 
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A D I +MP EP + VW ALLN   +  +V+L +   + L   EPEN G  +++ N+Y
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601

Query: 394 SLFGRW 399
           +  G W
Sbjct: 602 AAKGMW 607

BLAST of Carg01023 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-35
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = 0

Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           N+ +  A+ID YAK G L +AR V +  K R ++ WTA+ISAY  +G    A++ F ++ 
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402

Query: 274 TNGIRPDSVAF-TPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
            +G+ PDS+AF T + +C+H+G L+E    F ++   Y I P +EH ACMV +L  A K 
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A  FI  M +EP  +VW ALL    V  D ++G    D L    PE +G  +++ N+Y
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522

Query: 394 SLFGRWKK 401
           +  GRW++
Sbjct: 523 AKAGRWEE 530

BLAST of Carg01023 vs. ExPASy Swiss-Prot
Match: Q9FMA1 (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-35
Identity = 75/200 (37.50%), Postives = 116/200 (58.00%), Query Frame = 0

Query: 203 CNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGA 262
           C+  D  G +  V +  A+ID YAKSG + +A  V +    R+++ WT II+  A +G  
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHG 332

Query: 263 NVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYAC 322
             AL+ F  ++  G+RP+ V F  + S C+H G +D   ++FN +  +YGI P IEHY C
Sbjct: 333 AEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGC 392

Query: 323 MVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPEN 382
           M+ +L  A K  +A + I  MP +    +W +LL  ++V  D+ELG+     L+  EP N
Sbjct: 393 MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNN 452

Query: 383 TGNNIIMDNLYSLFGRWKKS 402
           +GN +++ NLYS  GRW +S
Sbjct: 453 SGNYMLLANLYSNLGRWDES 472

BLAST of Carg01023 vs. ExPASy TrEMBL
Match: A0A6J1CWN9 (pentatricopeptide repeat-containing protein At2g37310 OS=Momordica charantia OX=3673 GN=LOC111015095 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 239/588 (40.65%), Postives = 281/588 (47.79%), Query Frame = 0

Query: 10  QISVPASALYPWVLQAIRRNDGMNYGAYGRFIQH----------------VPASSSSASA 69
           QIS+PA A+ PW LQAIRR DGMNY AYGR IQH                +   S +   
Sbjct: 3   QISIPAGAVIPWALQAIRRADGMNYAAYGRLIQHCADRRFLRLGKQLHARLVLLSVTPDN 62

Query: 70  TASRSSCSMFCRS---REFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLF 129
                  + + +S   R+   + G+     I+  W  L  + YT HNM SDMLKLF SL 
Sbjct: 63  FLGSKLIAFYSKSGSLRDAYNVFGNISHKNIFS-WNAL-FISYTLHNMHSDMLKLFSSLV 122

Query: 130 NLISMDAKPDKFKFIV-------SFFDEGLSLSFLC------LCSD---TRGVISW---- 189
           N  +MD KPDKF           SF D  L+    C      L SD      ++++    
Sbjct: 123 NSNAMDVKPDKFTITCVLKALASSFTDSILAKEVHCFVLRRGLESDIFVVNALVTYYSRC 182

Query: 190 ----LAKIVFDRMPARDIVF---------------ECDKCLRRMRSHCAMISDYMT--EY 249
               LA+IVF RMP RDIV                EC +  + M S   +  + +T    
Sbjct: 183 EEVVLARIVFGRMPERDIVSWNAMVAGFSQGGFYEECKELFKEMLSSVELKPNALTAVSV 242

Query: 250 YDTCERSSHLL------------------TFCNT-------------------------- 309
              C +S+ L+                  + CN                           
Sbjct: 243 LQACAQSNDLIFGMEVHRFVNESQIEMDVSLCNAVIGLYAKCGSLDYARELFEEMPEKDE 302

Query: 310 ----------------------------------------------KDG----------- 369
                                                         +DG           
Sbjct: 303 VTYGSMISGYMVHGSVNQAMDLFQELKKPALSTWNAVISGLVQNNQQDGVLDIFRAMQSH 362

Query: 370 ----------------------------------NGYDGNVCVVTAIIDSYAKSGYLHRA 402
                                             NGY+GN+ V TAIIDSYAKSGYLH A
Sbjct: 363 GCRPNAVTLASVLPVFSHFSTLKGGKEIHAYAVRNGYNGNIYVATAIIDSYAKSGYLHGA 422

BLAST of Carg01023 vs. ExPASy TrEMBL
Match: A0A6J1F110 (pentatricopeptide repeat-containing protein At2g37310 OS=Cucurbita moschata OX=3662 GN=LOC111441405 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 2.8e-81
Identity = 156/194 (80.41%), Postives = 165/194 (85.05%), Query Frame = 0

Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YDGN+ V TAIIDSYAKSGYL  AR V DQ K RSLIIWTAIISAYAA+G AN  LS 
Sbjct: 371 NAYDGNIYVATAIIDSYAKSGYLQGARQVFDQLKRRSLIIWTAIISAYAAHGDANATLSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGIRPD V FT V  +CAHSGELDEAWKIFNVLLPE+GIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIRPDPVTFTSVLVACAHSGELDEAWKIFNVLLPEFGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMPIEPT KVW ALLNGASVAGDVELGK VFD LLD EPENTGN II
Sbjct: 491 RAGKLSDAVEFISKMPIEPTAKVWGALLNGASVAGDVELGKYVFDRLLDIEPENTGNYII 550

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS FGRWK++
Sbjct: 551 MANLYSQFGRWKEA 564

BLAST of Carg01023 vs. ExPASy TrEMBL
Match: A0A6J1J0S5 (pentatricopeptide repeat-containing protein At2g37310 OS=Cucurbita maxima OX=3661 GN=LOC111482423 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 154/194 (79.38%), Postives = 164/194 (84.54%), Query Frame = 0

Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YDGN+ V TAIIDSYAKSGYL  AR V DQ K RSLIIWTAIISAYAA+G AN  LS 
Sbjct: 371 NAYDGNIYVATAIIDSYAKSGYLQGARQVFDQSKRRSLIIWTAIISAYAAHGDANATLSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGIRPD V FT V  +CAHSGEL+EAWKIFNVLLPE+GIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIRPDPVTFTSVLVACAHSGELNEAWKIFNVLLPEFGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMPIEPT KVW ALLNGASVAGDVELGK VFD LLD EPENTGN II
Sbjct: 491 RAGKLSDAVEFISKMPIEPTAKVWGALLNGASVAGDVELGKYVFDRLLDIEPENTGNYII 550

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS FG WK++
Sbjct: 551 MANLYSQFGWWKEA 564

BLAST of Carg01023 vs. ExPASy TrEMBL
Match: A0A0A0LFN1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736590 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 5.8e-79
Identity = 150/192 (78.12%), Postives = 162/192 (84.38%), Query Frame = 0

Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YD N+ V TAIIDSYAK GYLH A+LV DQ KGRSLI WT+IISAYA +G ANVALS 
Sbjct: 371 NTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGI+PD V FT V  +CAHSGELDEAWKIFNVLLPEYGIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMP+EPT KVW ALLNGASVAGDVELGK VFD L + EPENTGN +I
Sbjct: 491 RAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVI 550

Query: 389 MDNLYSLFGRWK 400
           M NLYS  GRWK
Sbjct: 551 MANLYSQSGRWK 562

BLAST of Carg01023 vs. ExPASy TrEMBL
Match: A0A5A7TRM4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002030 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.1e-77
Identity = 222/566 (39.22%), Postives = 264/566 (46.64%), Query Frame = 0

Query: 32  MNYGAYGRFIQH----------------VPASSSSASATASRSSCSMFCRS---REFPRI 91
           MNYGAYGR IQH                +  SS +          S + +S   R+   +
Sbjct: 1   MNYGAYGRLIQHCTDHLFFRVGKQLHARLVLSSVAPDNFLGSKLISFYSKSGSLRDAYNV 60

Query: 92  EGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPDKF------KFIV 151
            G ++  K    W  L  + YT HNM +D+LKLFLSL N  S D KPD+F      K + 
Sbjct: 61  FG-KIPRKNIFSWNAL-FISYTLHNMHTDLLKLFLSLVNSNSTDVKPDRFTVTCVLKALA 120

Query: 152 SFFDEG-LSLSFLC------LCSD---TRGVISW--------LAKIVFDRMPARDIVF-- 211
           S F    L+    C      L SD      +I++        LA+I+FDRMP RDIV   
Sbjct: 121 SLFSNSVLAKEVHCFILRRELESDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWN 180

Query: 212 -------------ECDKCLRRMRS------------------------------------ 271
                        +C +  R M S                                    
Sbjct: 181 AMLAGYSQGGSYEKCKELFRVMSSSLEVKPNALTAVSVLQACAQSNDLIFGMEVHRFVNE 240

Query: 272 ----------------------------------------HCAMISDYMT--------EY 331
                                                   +C+MIS YM         + 
Sbjct: 241 SQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDL 300

Query: 332 YDTCERS-----------------------------------------------SHLLTF 391
           +   ER                                                SH  T 
Sbjct: 301 FRELERPRLPTWNAVISGLVQNNRQDGALDIFRAMQSHGCRPNTVTLASILPIFSHFSTL 360

Query: 392 CNTKDGNG------YDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAY 402
              K+ +G      YDGN+ V TAIIDSYAK GYL  AR V DQ KGRSLI WT+IISAY
Sbjct: 361 KGGKEIHGYAIRNTYDGNIFVATAIIDSYAKCGYLQGARQVFDQLKGRSLIAWTSIISAY 420

BLAST of Carg01023 vs. TAIR 10
Match: AT2G37310.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-54
Identity = 107/194 (55.15%), Postives = 136/194 (70.10%), Query Frame = 0

Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           NG D N+ V T+IID+YAK G+L  A+ V D  K RSLI WTAII+AYA +G ++ A S 
Sbjct: 395 NGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSL 454

Query: 269 FYEILTNGIRPDSVAFTPVCSC-AHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           F ++   G +PD V  T V S  AHSG+ D A  IF+ +L +Y I+P +EHYACMV VLS
Sbjct: 455 FDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLS 514

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDA++FISKMPI+P  KVW ALLNGASV GD+E+ +   D L + EPENTGN  I
Sbjct: 515 RAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTI 574

Query: 389 MDNLYSLFGRWKKS 402
           M NLY+  GRW+++
Sbjct: 575 MANLYTQAGRWEEA 588

BLAST of Carg01023 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-37
Identity = 73/192 (38.02%), Postives = 115/192 (59.90%), Query Frame = 0

Query: 210 GYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFF 269
           G+  N+ + +A++D Y+K G +  AR + D+      + WTAII  +A +G  + A+S F
Sbjct: 373 GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432

Query: 270 YEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSL 329
            E+   G++P+ VAF  V  +C+H G +DEAW  FN +   YG+   +EHYA +  +L  
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGR 492

Query: 330 AEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIM 389
           A K  +A +FISKM +EPT  VW  LL+  SV  ++EL + V + +   + EN G  ++M
Sbjct: 493 AGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLM 552

Query: 390 DNLYSLFGRWKK 401
            N+Y+  GRWK+
Sbjct: 553 CNMYASNGRWKE 564

BLAST of Carg01023 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-37
Identity = 68/186 (36.56%), Postives = 113/186 (60.75%), Query Frame = 0

Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           NV V +A+ID YAK G ++ +++V +    ++L+ W ++++ ++ +G A   +S F  ++
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 274 TNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
              ++PD ++FT + S C   G  DE WK F ++  EYGI+P +EHY+CMV +L  A K 
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A D I +MP EP + VW ALLN   +  +V+L +   + L   EPEN G  +++ N+Y
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601

Query: 394 SLFGRW 399
           +  G W
Sbjct: 602 AAKGMW 607

BLAST of Carg01023 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-36
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = 0

Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           N+ +  A+ID YAK G L +AR V +  K R ++ WTA+ISAY  +G    A++ F ++ 
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402

Query: 274 TNGIRPDSVAF-TPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
            +G+ PDS+AF T + +C+H+G L+E    F ++   Y I P +EH ACMV +L  A K 
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A  FI  M +EP  +VW ALL    V  D ++G    D L    PE +G  +++ N+Y
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522

Query: 394 SLFGRWKK 401
           +  GRW++
Sbjct: 523 AKAGRWEE 530

BLAST of Carg01023 vs. TAIR 10
Match: AT5G56310.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-36
Identity = 75/200 (37.50%), Postives = 116/200 (58.00%), Query Frame = 0

Query: 203 CNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGA 262
           C+  D  G +  V +  A+ID YAKSG + +A  V +    R+++ WT II+  A +G  
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHG 332

Query: 263 NVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYAC 322
             AL+ F  ++  G+RP+ V F  + S C+H G +D   ++FN +  +YGI P IEHY C
Sbjct: 333 AEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGC 392

Query: 323 MVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPEN 382
           M+ +L  A K  +A + I  MP +    +W +LL  ++V  D+ELG+     L+  EP N
Sbjct: 393 MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNN 452

Query: 383 TGNNIIMDNLYSLFGRWKKS 402
           +GN +++ NLYS  GRW +S
Sbjct: 453 SGNYMLLANLYSNLGRWDES 472

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7027978.14.8e-237100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6596437.12.4e-10373.38Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022145703.12.2e-8840.65pentatricopeptide repeat-containing protein At2g37310 [Momordica charantia][more]
XP_023539538.11.8e-8751.84pentatricopeptide repeat-containing protein At2g37310-like [Cucurbita pepo subsp... [more]
KAG6580575.15.0e-8540.77ABC transporter G family member 20, partial [Cucurbita argyrosperma subsp. soror... [more]
Match NameE-valueIdentityDescription
Q9ZUT54.0e-5355.15Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX... [more]
Q9LW632.6e-3638.02Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
Q9LNU63.4e-3636.56Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
P0C8991.7e-3538.83Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
Q9FMA12.2e-3537.50Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1CWN91.1e-8840.65pentatricopeptide repeat-containing protein At2g37310 OS=Momordica charantia OX=... [more]
A0A6J1F1102.8e-8180.41pentatricopeptide repeat-containing protein At2g37310 OS=Cucurbita moschata OX=3... [more]
A0A6J1J0S51.5e-7979.38pentatricopeptide repeat-containing protein At2g37310 OS=Cucurbita maxima OX=366... [more]
A0A0A0LFN15.8e-7978.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736590 PE=4 SV=1[more]
A0A5A7TRM41.1e-7739.22Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT2G37310.12.9e-5455.15Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G23330.11.9e-3738.02Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G20230.12.4e-3736.56Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G49142.11.2e-3638.83Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G56310.11.6e-3637.50Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 248..281
e-value: 0.0023
score: 16.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 248..277
e-value: 0.0077
score: 16.4
coord: 218..243
e-value: 0.54
score: 10.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 9.470621
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 289..394
e-value: 4.3E-14
score: 54.2
coord: 168..288
e-value: 1.4E-13
score: 52.6
NoneNo IPR availablePANTHERPTHR47925OS01G0913400 PROTEIN-RELATEDcoord: 209..400
NoneNo IPR availablePANTHERPTHR47925:SF76BNAA04G21330D PROTEINcoord: 209..400

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01023-RACarg01023-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding