Carg00558 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00558
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 5587592 .. 5587888 (-)
RNA-Seq ExpressionCarg00558
SyntenyCarg00558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCTTCCTGTGCAGCACCATCATGGTGTACCATGGAACCAAACCAGCAAGCACACCCATCACCACAGCTGCGACCGAGTCCACAAGCCCTATTGTTCATGTAAACCATATACCCTGCTTCTAATTGGATTCTTCAGGTAAGGTAAAATTAACAGTTATGTCTTTCTTTCTTTCTGTTTCTAGGATGGGTGAAAGGACTAACCTGCACCAGGAGTGATACAGACAAGGCCAGTGATGATCCCTTGAACTGCACCAATCACAGAGCTTTTCTTGTATACTATGATGTCCATTGA

mRNA sequence

ATGCCAGCTTCCTGTGCAGCACCATCATGGTGTACCATGGAACCAAACCAGCAAGCACACCCATCACCACAGCTGCGACCGAGATGGGTGAAAGGACTAACCTGCACCAGGAGTGATACAGACAAGGCCAGTGATGATCCCTTGAACTGCACCAATCACAGAGCTTTTCTTGTATACTATGATGTCCATTGA

Coding sequence (CDS)

ATGCCAGCTTCCTGTGCAGCACCATCATGGTGTACCATGGAACCAAACCAGCAAGCACACCCATCACCACAGCTGCGACCGAGATGGGTGAAAGGACTAACCTGCACCAGGAGTGATACAGACAAGGCCAGTGATGATCCCTTGAACTGCACCAATCACAGAGCTTTTCTTGTATACTATGATGTCCATTGA

Protein sequence

MPASCAAPSWCTMEPNQQAHPSPQLRPRWVKGLTCTRSDTDKASDDPLNCTNHRAFLVYYDVH
Homology
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BLAST of Carg00558 vs. NCBI nr
Match: KAG7034060.1 (hypothetical protein SDJN02_03786, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 7.2e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPASCAAPSWCTMEPNQQAHPSPQLRPRWVKGLTCTRSDTDKASDDPLNCTNHRAFLVYY 60
          MPASCAAPSWCTMEPNQQAHPSPQLRPRWVKGLTCTRSDTDKASDDPLNCTNHRAFLVYY
Sbjct: 1  MPASCAAPSWCTMEPNQQAHPSPQLRPRWVKGLTCTRSDTDKASDDPLNCTNHRAFLVYY 60

Query: 61 DVH 64
          DVH
Sbjct: 61 DVH 63

The following BLAST results are available for this feature:
BLAST of Carg00558 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034060.17.2e-31100.00hypothetical protein SDJN02_03786, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00558 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00558 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00558 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00558-RACarg00558-RAmRNA