Carg00458 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00458
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ubiquitin-like domain-containing protein
Location	Carg_Chr04: 7407528 .. 7411618 (+)
RNA-Seq Expression	Carg00458
Synteny	Carg00458

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATCGACGGCGTTTGCACACTCGATGTCGCAGATTTTCCGCCGCTTCCGGTGGTCGAGAAGCGTCGCCGGTCATTCTCGCTGCTCTTGTCTTCTTTGATGATTGTTGGATTCTCGAGGAAGAGTGGTTTGTATCGGCAGCTTCCGCATCAGCCTCTCGAACTCTCCGTCCTTAAATTGGATGGCTCTTGTTTTGGTAATCTTTAGTTCCGTAATCGATTCGTTTTTTATATGATTAAGAGCAGAGGAATCTCTGGTTTTGGTTTTATTGTGTTCATCTGATTTTGAGGATGTTGAAGGTTTCTACATTGTTCTATTCTCTGTTTTTTCCCCCTTTTTTTCTTTATATGGTGTTTGGTTGGTTTTGTGTTTCTTCTATTATTGAGAAAAGTAGTCGTACCATGTTGGCTTTATAGGTAAAGAATACAATCTCCATTTGTTACGAAGCTTTTTGGGAAAATCAAAAGAAAAATCATGAGAGCTTATGCTCAAAGTGGGCAATATCATACCATTGTTGAGAGTCGTGCTTTCTAACATGGTATGCCTTTAATTTAGACATGCCAATAGAATCCTAAGTGTCGAACAAAGAAGTTGTAAGGTTTGAAGGTGTAGTAAAAGGTGACTCAAATGTCGAACAAAAAGTGTACTTTGTTCGAGGACTCCAGAGAAGGAGTCGAGCCTCGATTAGAGAGAGGTTGTTTGAGAGCTCCAGAAAAGGAAGACTCAGGGGAGGCTCTATGGTGTGCTTTGTTTGAGGGGATGTTTGCTGAGGATTAGTGAGAAAAGTAGTCCCACGTCGCTAATCAAGAGAAAGATCATGAGTTTATAAGTAAGGAATACTATTTCCATTGGTATGAGACTTTTTGGGGAAATTAAATGAAAAACTTCGATAGTTTATACTCAAAATGGACAATACCATACTATTGTGGAGGGTCGTGATTCCTATCCTTCTTTTGCTTGGAATTTTCTTATTTAACAACGAAAGTAATATAAACTGATGCGCTAAATTTGAAAAATAAGAATGTCTTCGTGCACCATCTTTTAATCTAGGACTTCAATGAATTGAGATGTTTTGACACAGATATTCGAGTTAAGAGATCTGCTACTGTTGCTGAATTAAAGGGGGCAGTGGAGGCAGTCTTCAGCGACATGCCACAAGATGGACCAGGAAAGATTTCATGGTTAGTTCATTTAATTCTTTCTCATTTGATGCTTTCATTTGCTAGAAGATGTATCGGGCCGTGTGCCAGCGAGAACACTGAGCCTCGAAGGGAGTAGACACTAGGTGATGTGCTAGCAAGGACGCTGAGCCCTAGAGGGTGGTGGATTATGAAATCCCACATCGATTGAAAATGAACAAGTACTAGCAAGGATGCTGGACTCCGAAGGGGAGTGGATTGTGAGATCCTACATTGGTCCAATGTATGGGTTGGAGAGGAGAAAAAAAACCTTTTTTAACTTCTGTTCTTTATTTATTCATGGAGGCTCCATGTGTGGTGCCATTTCTGCTTATGCTATGATGGTCAGAAGTTGATTGATGATACGGGCTACATTGCAAAATTAGGCATCAAGGATGGTGATCAGGTATGCAGTTAGCTGTAGTTTATGTTGTCTTTTGTTGGGTTGATAATCATTCTGTGCTTGATGATTTAAAATTCGTGTGATGTATTGACAAGTTGTGCTCACAGCGTGTAACACCCTAAGCGTCCATAGATATTGTCTGCTTTGATCCATTACGTATCGCTGTTAGCCTCACGATTTTAAAATGCATCTGTTAGGGAGAGGTTTCCGTACCCTTATAAGGAATGTTTCGTTCCCATCTCCAACCGATGTGGGATCTCACAATCCACCTCCTTTGAGGCCCAGCGCTGACACACCGCCTAGTGTCTGGCTCTAATACCATTTGTAATAGCCCAAACTCACCGCTAGCAGTTATTGTTCGTTTTAACCTATTAGGTATCACCATCAGGTTCACAGTTTTAAATCGTTAGGAAGAGGTTTCCACACCTTTATTAGAAATATTTCGTTCCCCCCTCCAACCGATGTGGGATCTCACAATCCACCCCCTATGGAGGCCCAGCATCCTTTGCTGACACACAATCCGTTGTCTGGCTTTGATACTATTTGTACCAGCCGAAGCTCATTGCTAGCAGATATTGTCCACTTTAGCTTGTTAGGTACTGCCGTTAGCCTTACGATTTTAAAACACGTATGTTAGGGAGAGATTTCCACACCCTTATAAAGAATCTTTCGTTCCTCTCTCTAACCGACGTGGAATCCCAATTTGGTTGTTGATCATTGTGATACATTATTGTGAATTTAGTAACTATCAGGAATGTCATTGCATATGTTCATAGAATTTCCTTGTTTCAACAATATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAAGGCCAGGTTTCCCCAAAACTGCACAATAGGTAACACTAATACACATTTGTTGCTTATCAACAATGAGTTAAGCCTCATGCTGCATACAACACATTCGTTCATCACTTTTTACTGATCCTTAGATCCTTTTTGCTCTAAACAATCAGGACATCATCTCTATCAAGAAACTATGATCAGGACGATATAGAGAGTGGAAGGATTCAACATCATGGCAACAACCAACTCTTCAAACACCACGAGCCAAAGATGGTGGTCTTTTTGGGAGGGTGGTTCTCCCACATCAAGCTGGCATCTGCAGGGAAAACGTGCATCGAAAGCTTGGTTCGTTCGTCGGGAACTCAGCATAGTCTGGTTCATGGTTTTAAGAACTTAATTCAACTATGCCGCCAGAAACAATATTATCAGAAAGTGAGTAAAAGGAAGAGATCCATCCTTGGTGTCTGAATAGATTAGGAATGACTGAAACATATACACACACACACACACAGGTCTACTAGATTGTGTTATAGTCTAATCTCTGAAGTGTTTGTTCATATCCTTATAGCAATAAGCTGTTGTAGATATTTCAGCTTTCACAAAAATGAGTACCAGAATTTGTGCAGCCTAGTCAGTCGGTGATTATTGTTTTCGTGGTTGAAGACAATGATAGATATGAAGATTTGAACGTCTAACCTCAAGAGAAAGAATATAGGTCGAATAACGTTGAGGTAAGCTCGTGTTAGTAGCTAGTCACGAGATTATAGATCGATATAGGAGAAGCATTGTATCAAATACTCTAGTTTTGTCTTTCTTGTCATCTTCATTTTACTCTTTTGTTTGTAATGTTCTAAAATATTGGTGAATTGTAAGTAGCTTCGTTGCTGGTGTGGGTCCTAAATTCCTTGTGTTTTACAAGTTTGATGCCTACAAAAATTCCATCCAAGTCTCCGAAAACGATAATTAATGTTTTATCTATTAAGATAAACTAAATTCAAATCGACAGGATATAAACTAAAGAAATAATAATTTAAAAAAAAAAAAACCTAAATGCGTATAGTTTTGCAATTGGCAATTGCTCGAGTAAAACTTCTCAAAGATCTCCAGTTAAATTGATTATAATTCAAAATTTTAACTTAATCGTAATTGTAGAAGTTTCATTATTGACATGTTAGAGGAATGTATGCTTCGACACTCGAGCGGGTGAGTTTCGAGTTGGCAGTTGGTCACCGGATATGTTTAAAGGAAGCATTCTGAGACCCCGATTTGAATGGCCTCGTAAAAAAGGAGGTGCTTGGGCTACAAGAACGATTTGGTGGATCCTTGAAATAGCCCAAGTCCACTGCTAGCAAATATTTTATCCGTTTTAAAACACGTCTGTTAGGAGAGATTTCTGCATTCGAATACTTGGTTCTCTTCTCCAACCAATGTGGGATCTCACAATCCTACCCATTGACTTTCTCATGGTCAAGTTCCCTGGGATTCTCTCTTTCAAAGAAGAATGTAATACATACATGGCGTGGCGGATCCAGCTGAGGTCGAGGCAGTTAATTTCAGCACTTGAGTACCAACATCTTGAGGATTTTCACCGGTCAGTTAGACCAGTTTTGATAGCATTTGGGCTGTTTACAGCAATGAAGCTGGAATTTGCATTTGAGAAGAAAGTGAAG

mRNA sequence

ATGGCAATCGACGGCGTTTGCACACTCGATGTCGCAGATTTTCCGCCGCTTCCGGTGGTCGAGAAGCGTCGCCGGTCATTCTCGCTGCTCTTGTCTTCTTTGATGATTGTTGGATTCTCGAGGAAGAGTGGTTTGTATCGGCAGCTTCCGCATCAGCCTCTCGAACTCTCCGTCCTTAAATTGGATGGCTCTTGTTTTGATATTCGAGTTAAGAGATCTGCTACTGTTGCTGAATTAAAGGGGGCAGTGGAGGCAAAGTTGATTGATGATACGGGCTACATTGCAAAATTAGGCATCAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAAGGCCAGGTTTCCCCAAAACTGCACAATAGGACATCATCTCTATCAAGAAACTATGATCAGGACGATATAGAGAGTGGAAGGATTCAACATCATGGCAACAACCAACTCTTCAAACACCACGAGCCAAAGATGGTGGTCTTTTTGGGAGGGTGGTTCTCCCACATCAAGCTGGCATCTGCAGGGAAAACGTGCATCGAAAGCTTGGTTCGTTCGTCGGGAACTCAGCATAGTCTGGTTCATGGTTTTAAGAACTTAATTCAACTATGCCGCCAGAAACAATATTATCAGAAAGTGAGTAAAAGGAAGAGATCCATCCTTGCAATGAAGCTGGAATTTGCATTTGAGAAGAAAGTGAAG

Coding sequence (CDS)

ATGGCAATCGACGGCGTTTGCACACTCGATGTCGCAGATTTTCCGCCGCTTCCGGTGGTCGAGAAGCGTCGCCGGTCATTCTCGCTGCTCTTGTCTTCTTTGATGATTGTTGGATTCTCGAGGAAGAGTGGTTTGTATCGGCAGCTTCCGCATCAGCCTCTCGAACTCTCCGTCCTTAAATTGGATGGCTCTTGTTTTGATATTCGAGTTAAGAGATCTGCTACTGTTGCTGAATTAAAGGGGGCAGTGGAGGCAAAGTTGATTGATGATACGGGCTACATTGCAAAATTAGGCATCAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAAGGCCAGGTTTCCCCAAAACTGCACAATAGGACATCATCTCTATCAAGAAACTATGATCAGGACGATATAGAGAGTGGAAGGATTCAACATCATGGCAACAACCAACTCTTCAAACACCACGAGCCAAAGATGGTGGTCTTTTTGGGAGGGTGGTTCTCCCACATCAAGCTGGCATCTGCAGGGAAAACGTGCATCGAAAGCTTGGTTCGTTCGTCGGGAACTCAGCATAGTCTGGTTCATGGTTTTAAGAACTTAATTCAACTATGCCGCCAGAAACAATATTATCAGAAAGTGAGTAAAAGGAAGAGATCCATCCTTGCAATGAAGCTGGAATTTGCATTTGAGAAGAAAGTGAAG

Protein sequence

MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLKLDGSCFDIRVKRSATVAELKGAVEAKLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQHSLVHGFKNLIQLCRQKQYYQKVSKRKRSILAMKLEFAFEKKVK

Homology

[Close]

BLAST of Carg00458 vs. NCBI nr
Match: KAG7031799.1 (hypothetical protein SDJN02_05840, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60
           MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK
Sbjct: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60

Query: 61  LDGSCFDIRVKRSATVAELKGAVEAKLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRK 120
           LDGSCFDIRVKRSATVAELKGAVEAKLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRK
Sbjct: 61  LDGSCFDIRVKRSATVAELKGAVEAKLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRK 120

Query: 121 QSKKGQVSPKLHNRTSSLSRNYDQDDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIK 180
           QSKKGQVSPKLHNRTSSLSRNYDQDDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIK
Sbjct: 121 QSKKGQVSPKLHNRTSSLSRNYDQDDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIK 180

Query: 181 LASAGKTCIESLVRSSGTQHSLVHGFKNLIQLCRQKQYYQKVSKRKRSILAMKLEFAFEK 240
           LASAGKTCIESLVRSSGTQHSLVHGFKNLIQLCRQKQYYQKVSKRKRSILAMKLEFAFEK
Sbjct: 181 LASAGKTCIESLVRSSGTQHSLVHGFKNLIQLCRQKQYYQKVSKRKRSILAMKLEFAFEK 240

Query: 241 KVK 244
           KVK
Sbjct: 241 KVK 243

[Close]

BLAST of Carg00458 vs. NCBI nr
Match: XP_022940425.1 (uncharacterized protein LOC111446036 [Cucurbita moschata])

HSP 1 Score: 438.0 bits (1125), Expect = 5.5e-119
Identity = 228/261 (87.36%), Postives = 230/261 (88.12%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60
           MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK
Sbjct: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60

Query: 61  LDGSCFDIRVKRSATVAELKGAVEA-----------------------------KLIDDT 120
           LDGSCFDIRVKRSATVAELKGAVEA                             KLIDDT
Sbjct: 61  LDGSCFDIRVKRSATVAELKGAVEAVFSDMPQDGPGKISWLHVWCHFCLCYDGQKLIDDT 120

Query: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180
           GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR
Sbjct: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180

Query: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQHSLVHGFKNLIQ 233
           IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGT+HSLVHGFKNLIQ
Sbjct: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTRHSLVHGFKNLIQ 240

[Close]

BLAST of Carg00458 vs. NCBI nr
Match: XP_022982434.1 (uncharacterized protein LOC111481262 [Cucurbita maxima])

HSP 1 Score: 435.6 bits (1119), Expect = 2.7e-118
Identity = 226/261 (86.59%), Postives = 229/261 (87.74%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60
           MAIDGVCTLDV+DFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK
Sbjct: 1   MAIDGVCTLDVSDFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60

Query: 61  LDGSCFDIRVKRSATVAELKGAVEA-----------------------------KLIDDT 120
           LDGSCFDIRVKRSATVAELKGAVEA                             KLIDDT
Sbjct: 61  LDGSCFDIRVKRSATVAELKGAVEAVFSDMPQDGPGKISWLHVWCHFCLCYDGQKLIDDT 120

Query: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180
           GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR
Sbjct: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180

Query: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQHSLVHGFKNLIQ 233
           IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGT HSLV GFKNLIQ
Sbjct: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTHHSLVRGFKNLIQ 240

[Close]

BLAST of Carg00458 vs. NCBI nr
Match: XP_023524342.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.5 bits (1116), Expect = 6.1e-118
Identity = 226/261 (86.59%), Postives = 230/261 (88.12%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60
           MAIDGVCTLDVADFPP PVVEKRR+SFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK
Sbjct: 1   MAIDGVCTLDVADFPPPPVVEKRRQSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60

Query: 61  LDGSCFDIRVKRSATVAELKGAVEA-----------------------------KLIDDT 120
           LDGSCFDIRVKRSATVAELKGAVEA                             KLIDDT
Sbjct: 61  LDGSCFDIRVKRSATVAELKGAVEAVFSDMPQDGPGKISWLHVWCHFCLCYDGQKLIDDT 120

Query: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180
           GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKL+NRTSSLSRNYDQDDIESGR
Sbjct: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLNNRTSSLSRNYDQDDIESGR 180

Query: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQHSLVHGFKNLIQ 233
           IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGT+HSLVHGFKNLIQ
Sbjct: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTRHSLVHGFKNLIQ 240

[Close]

BLAST of Carg00458 vs. NCBI nr
Match: XP_038899214.1 (uncharacterized protein LOC120086568 [Benincasa hispida])

HSP 1 Score: 330.1 bits (845), Expect = 1.6e-86
Identity = 182/277 (65.70%), Postives = 202/277 (72.92%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLP-----VVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLE 60
           MAIDGVCTLDV +FPP P      VEK RRSFSLL S LMIVG SRK+ LYRQLPHQPL 
Sbjct: 1   MAIDGVCTLDVVEFPPPPPPPPTTVEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLM 60

Query: 61  LSVLKLDGSCFDIRVKRSATVAELKGAVEA-----------------------------K 120
           LSVLKLDGSCFDI+VKRSATVAELKGAVE+                             K
Sbjct: 61  LSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWHFCLCYAGQK 120

Query: 121 LIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQ-- 180
           L+DD  YIA  GIKDGDQLQFVRHVTTGYN IRKQSKK  VS KL +R S  S+NY+Q  
Sbjct: 121 LVDDADYIANFGIKDGDQLQFVRHVTTGYNAIRKQSKKCVVSSKLLSRISYRSKNYEQND 180

Query: 181 ---------DDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRS 233
                    +DIESGR QHHGNN+LF +HEPKMVVFLGGWFSH KLASAGKT I SLVR 
Sbjct: 181 QEDMERYNYNDIESGRFQHHGNNELFMNHEPKMVVFLGGWFSHTKLASAGKTRINSLVRP 240

[Close]

BLAST of Carg00458 vs. ExPASy TrEMBL
Match: A0A6J1FQJ1 (uncharacterized protein LOC111446036 OS=Cucurbita moschata OX=3662 GN=LOC111446036 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.7e-119
Identity = 228/261 (87.36%), Postives = 230/261 (88.12%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60
           MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK
Sbjct: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60

Query: 61  LDGSCFDIRVKRSATVAELKGAVEA-----------------------------KLIDDT 120
           LDGSCFDIRVKRSATVAELKGAVEA                             KLIDDT
Sbjct: 61  LDGSCFDIRVKRSATVAELKGAVEAVFSDMPQDGPGKISWLHVWCHFCLCYDGQKLIDDT 120

Query: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180
           GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR
Sbjct: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180

Query: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQHSLVHGFKNLIQ 233
           IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGT+HSLVHGFKNLIQ
Sbjct: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTRHSLVHGFKNLIQ 240

[Close]

BLAST of Carg00458 vs. ExPASy TrEMBL
Match: A0A6J1J4J2 (uncharacterized protein LOC111481262 OS=Cucurbita maxima OX=3661 GN=LOC111481262 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 226/261 (86.59%), Postives = 229/261 (87.74%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60
           MAIDGVCTLDV+DFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK
Sbjct: 1   MAIDGVCTLDVSDFPPLPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLK 60

Query: 61  LDGSCFDIRVKRSATVAELKGAVEA-----------------------------KLIDDT 120
           LDGSCFDIRVKRSATVAELKGAVEA                             KLIDDT
Sbjct: 61  LDGSCFDIRVKRSATVAELKGAVEAVFSDMPQDGPGKISWLHVWCHFCLCYDGQKLIDDT 120

Query: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180
           GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR
Sbjct: 121 GYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNYDQDDIESGR 180

Query: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQHSLVHGFKNLIQ 233
           IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGT HSLV GFKNLIQ
Sbjct: 181 IQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTHHSLVRGFKNLIQ 240

[Close]

BLAST of Carg00458 vs. ExPASy TrEMBL
Match: A0A6J1BY98 (uncharacterized protein LOC111006831 OS=Momordica charantia OX=3673 GN=LOC111006831 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 7.5e-82
Identity = 175/272 (64.34%), Postives = 199/272 (73.16%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPLP----VVEKRRRSFSLLLSS-LMIVGFSRKSGLYRQLPHQPLE 60
           MA+DGVC LD+ DFP  P     + KRRRSFSLL+SS LMIVG SRK+  YRQLPHQPL 
Sbjct: 1   MAVDGVCRLDIGDFPAPPRALSSLAKRRRSFSLLISSPLMIVGLSRKNVSYRQLPHQPLH 60

Query: 61  LSVLKLDGSCFDIRVKRSATVAELKGAVEA-----------------------------K 120
           LSVLKLDGSCFDI+VK+SATVAELKGAVEA                             K
Sbjct: 61  LSVLKLDGSCFDIQVKKSATVAELKGAVEAVFSHMPQDGPGKISWLHVWWHFCLCYAGEK 120

Query: 121 LIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRNY---D 180
           L+DDT YIA  GIKDGDQLQFVRHVTTGYNVIRKQS +  VS KLH+RTSS S+++   D
Sbjct: 121 LVDDTDYIANFGIKDGDQLQFVRHVTTGYNVIRKQSNEYVVSSKLHSRTSSRSKSHKRND 180

Query: 181 QD---DIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTQH 233
           QD   DIE GR QHH N +LF   EPKMVVFLGGWFSH KLASAG+  I SLVR SG++ 
Sbjct: 181 QDNYNDIEMGRFQHHNNGELFMSPEPKMVVFLGGWFSHTKLASAGRMSINSLVRPSGSRP 240

[Close]

BLAST of Carg00458 vs. ExPASy TrEMBL
Match: A0A5A7T9I3 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003750 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.1e-80
Identity = 175/277 (63.18%), Postives = 196/277 (70.76%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPP---LPVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELS 60
           MA+DGVCTLDV DFPP       EK RRSFSLL S LMIVG SRK+ LYRQLPHQPL LS
Sbjct: 1   MAVDGVCTLDVVDFPPPTSTTTAEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLMLS 60

Query: 61  VLKLDGSCFDIRVKRSATVAELKGAVE-----------------------------AKLI 120
           VLKLDGSCFDI+V+RSATVAELKGAVE                              KLI
Sbjct: 61  VLKLDGSCFDIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLI 120

Query: 121 DDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSR-------- 180
           DD  YIA  GIKDGDQLQFVRHVTTGYNVIRKQSKK +VS KL +R SS S+        
Sbjct: 121 DDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQK 180

Query: 181 -----NYDQDDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRS 233
                NY  +DIESGR QH+GNN LF  ++PKMVVFLGGWFSH KLASAGK  I+SLVR 
Sbjct: 181 DMERYNYKYNDIESGRCQHNGNNDLFV-NQPKMVVFLGGWFSHTKLASAGKMSIKSLVRP 240

[Close]

BLAST of Carg00458 vs. ExPASy TrEMBL
Match: A0A0A0LH97 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G877630 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79
Identity = 175/277 (63.18%), Postives = 196/277 (70.76%), Query Frame = 0


Query: 1   MAIDGVCTLDVADFPPL---PVVEKRRRSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELS 60
           MA+DGVC LDV DFPPL      EK RRSFSLL S LMIVG SRK+ LYRQLPHQPL LS
Sbjct: 1   MAVDGVCALDVVDFPPLQSTTTPEKHRRSFSLLSSPLMIVGLSRKNVLYRQLPHQPLMLS 60

Query: 61  VLKLDGSCFDIRVKRSATVAELKGAVE-----------------------------AKLI 120
           VLKLDGS FDI+V+RSATVAELKGAVE                              KL+
Sbjct: 61  VLKLDGSSFDIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLV 120

Query: 121 DDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLHNRTSSLSRN------- 180
           DD  YIA  GIKDGDQLQFVRHVTTGYNVIRKQSKK  VS KL +R SS S++       
Sbjct: 121 DDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKSFKQNDQK 180

Query: 181 ----YDQDDIESGRIQHHG--NNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRS 233
               Y+ +DIESGR QH G  NN LF +HEPKMVVFLGGWFSH KLASAGK  I+SLVR 
Sbjct: 181 DMERYNYNDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRP 240

[Close]

BLAST of Carg00458 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-15
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 13  DFPPLPVVEKRRRSFSLLLSSLMIVGF--SRKSGLYRQLPHQPLELSVLKLDGSCFDIRV 72
           D PP       RRS +  LS L ++     R+S  Y Q+P +P++L+VLKLDGS F I+V
Sbjct: 2   DVPP-------RRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQV 61

Query: 73  KRSATVAELKGAVEA-----------------------------KLIDDTGYIAKLGIKD 125
            ++ATV ELK AVEA                             +LI+++ Y+ + GIKD
Sbjct: 62  LKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKD 121

[Close]

BLAST of Carg00458 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13
Identity = 53/151 (35.10%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 39  FSRKSGLYRQLPHQPLELSVLKLDGSCFDIRVKRSATVAELKGAVEA------------- 98
           F R++  Y +LP++P+ LSVLKLDGS FD+ V  SATV +LK A+E              
Sbjct: 4   FHRRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKI 63

Query: 99  ----------------KLIDDTGYIAKLGIKDGDQLQFVRHV------TTGYNVIRKQSK 151
                           KLI DT  I   G+KDGD+++F  HV      + GY+   KQ  
Sbjct: 64  SWSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKN 123

[Close]

BLAST of Carg00458 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 55/202 (27.23%), Postives = 89/202 (44.06%), Query Frame = 0


Query: 41  RKSGLYRQLPHQPLELSVLKLDGSCFDIRVKRSATVAELKGAVE---------------- 100
           R+S   +  P   ++LSV+KL+GS FD+ V +  +VAELK AVE                
Sbjct: 40  RRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISW 99

Query: 101 -------------AKLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKL 160
                         +L++D   I  LG+ DGDQL FVRH++  ++ + K+SK       L
Sbjct: 100 SHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLSIDHSPMNKRSKSPSCKRYL 159

Query: 161 HNRTSSL-----SRNYDQDDIES-GRIQHHGNNQLFKHHEPKMVVFLGGWFSHI---KLA 205
               SS+      +N +Q+ ++      + G        E ++V  + GW  +     ++
Sbjct: 160 ELDVSSIVNEIQIQNQNQNGVDDVAEKCYPGAQDELPAAESRLVNLIKGWLPYAGRWGVS 219

[Close]

BLAST of Carg00458 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 49  LPHQPLELSVLKLDGSCFDIRVKRSATVAELKGAVEA----------------------- 108
           +P +P++L+VLKLDGS F   V ++ATV ELK AVEA                       
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFC 60

Query: 109 ------KLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKK 125
                 +LI+++ Y+ + GIKDGDQL+F+RH++    ++ K   K
Sbjct: 61  LSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSK 102

The following BLAST results are available for this feature:

BLAST of Carg00458 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031799.1	1.3e-131	100.00	hypothetical protein SDJN02_05840, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940425.1	5.5e-119	87.36	uncharacterized protein LOC111446036 [Cucurbita moschata]	[more]
XP_022982434.1	2.7e-118	86.59	uncharacterized protein LOC111481262 [Cucurbita maxima]	[more]
XP_023524342.1	6.1e-118	86.59	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita pepo subs...	[more]
XP_038899214.1	1.6e-86	65.70	uncharacterized protein LOC120086568 [Benincasa hispida]	[more]

BLAST of Carg00458 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00458 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQJ1	2.7e-119	87.36	uncharacterized protein LOC111446036 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1J4J2	1.3e-118	86.59	uncharacterized protein LOC111481262 OS=Cucurbita maxima OX=3661 GN=LOC111481262...	[more]
A0A6J1BY98	7.5e-82	64.34	uncharacterized protein LOC111006831 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5A7T9I3	4.1e-80	63.18	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var....	[more]
A0A0A0LH97	1.2e-79	63.18	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G877...	[more]

BLAST of Carg00458 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	2.7e-15	36.36	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	2.5e-13	35.10	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	1.5e-10	27.23	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	5.8e-10	36.19	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 55..86 e-value: 5.2E-5 score: 23.2
None	No IPR available	GENE3D	3.10.20.90		coord: 50..86 e-value: 1.5E-7 score: 33.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..138
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 85..223 coord: 12..85
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 85..223 coord: 12..85
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 50..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00458-RA	Carg00458-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex