CaUC11G202350 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G202350
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Sm protein F
Location	Ciama_Chr11: 1930329 .. 1933147 (+)
RNA-Seq Expression	CaUC11G202350
Synteny	CaUC11G202350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTCTCTCATCTGTGTTGATAATATGAAGCTTTGACATCTTCAATCGTTTGTTTATTGGCCCTCTGCTTTGTTTTGTCCATTTTGGTTGTATATTTTCTTTTTGCTTCTTGTGTTATTATGGTTTAATCGTCACTTTCGAGCGGGTTTCCTTTGTATCTACTGTGATTGCTCCCTTTGTAGTCTACGGATTATTTCATTCATCATAAAAATTTTCCGTGTGTAGTATTAATTATTGGATGAGTTTTCGATTGATTTCACTGATTCTTCTGTTAGGTTTCATTTTTGGTTGTTTCACTGATTCTTCTGTTATGTTTCATTTTTGGTTGTTTAGTTAGAATTTCTGTTATTTTGTTAAACTTCTGTTATTTAAATCTGTTAATTTTAACAGCCTTTTCACTTCTCACACTTACATATATGGGATATGATGAATAAAGAGTGAAGGATATTTTTCATTTTGCTTCTCTTCTAATAATTCGTAAATGACGTTTAATTCTTTAATATGGTTGTTTGGACATTGTAGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGCAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAATACAAAGGTTTGCTTCTATCTGCTGTTTGTTTCCTCGTTTCTCTTGCCTGCTGCAGTTTGTACTGACTTTCCTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGGTGTGTTTTCTACTTCAATTGAAACTAATTTAGACATTTCTTTTTGGGTGTGATTGTATCCTTATTGTTTTCGGGTCTCCCTCTGCTTCAGGACTTAGTTTATCACGTGGTATCCGTGAACTATTTTTGACTCTAATAAATTTATGTATTATGAGAAGAGAATTTAGTGTAATTGTCTTTTTTTCTTGAGAGATCGTTCAAACGTAGCACTAACCAATTCAATATCCTTTATCTCTGAATCTAATTTGATGTGTTCTGCTTGTATTAAAAGTTCTCTCTTACCACTATTTTTCATTTTCTGATTTCATAGGGCTTGGATTTTTTCTGAAAATCTAGTTTGGAAAATATGTTGTCCATTTTTGTTTTCTCAATATTTATCGTGCATGTTGAAATTTGTATGCATAGTCAAGTGGAGTGGTTTAGGCATCTCCACTTCCTCCAAGGAGTTGTAGGTTCGCCTCACCACTCCCGCATTTGTTTCAATATTCTCAAAAGGAAGATGAATTCATTTGTTCTAAAATGTAGATCATTGAGGTTACAAATTAAAAGATGTGAAGTAAAATCAACCTTTTCTCTGAATTATTTGTTTGAAAAGTTGAAAATTTTATTTGAAAATGGTTTTCAAATAAGTCCACAGTTTCTTCCCGATGCTGATTCCAGCATACAACTTTCTAAATACAGCTTGCTAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTAACCTTCTCTCAATGATTGAAAATCACAATATCTAATGCATCAATTCTTATTTATACTTTGCCAAGGGTAAGAAAAGAGGAGTGGAGAATTGTTTAGTAGTTAAAGCTTGAGTGAGTATATTCAAGAGAGGAAAAGTTCCAAATATCTCAAATACTTTGTTATCTTGTAGTTTTATATTTTAGCATATTTGGGTACCATCATAATATGTTCTGTTCATGATATAAATGCTTAAAGAACAATATGAGAAAATATGACACAAGTACGCATTTGCATTTATCTTACTACTGCAAGGATATGTTTGTAGTCTTTGTCTGGTGCATGGCGCACTTGGTGCCCTTTAAAATTTAGAGCTTTCATGCTTAACGATGAATTGTTCCACAATTTTTGGCATATCATGTCAATTTTCCTTTTTTTTCCTTGCAGGTGTAATAATGTTCTTTATCTTCGAGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGACTAGCATGTAAATTTTTGGCAGCTCTTCGTTGTCGTAGTAGCAGTAAAGTATTTAGCTTTGTAGTTTTCTAGTTTTTCTTTCTTCTGTTGCTTAATTTGTATCTTTGTTGTTGATACTAATCTTTAAAGGTCAGGAACACCCTCTGATTTGGTCGATTTCAGACTTGCAACAATCATTCGGTTTCCACCATTGTGGTAGGGAGATTGAATGGTAGGAAAAGTATTCTTGAATCTGAATGTAACACCTAGTTTTCCTGGTAGCTTTGAATTGCTTCAGTTTTTCGACATAAGATATAGTTGAGCTTTTTATAATTTGTTCATGTGGAGTGCAATGGGATGGAATATATTCATGACGTGGTACGGCTTGTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTACAACTACAGAGGGTGGAGGATTGAACCTTTTTTTCTTTGTACAACTGCGGGGTGGGAAATTAAACCTTCGATCTCTAGGGACAGAGTGCACCAATACAATATTGACTGGCTAG

mRNA sequence

ATGACTAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGCAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAATACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGCTTGCTAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAATAATGTTCTTTATCTTCGAGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCAGGGTGGAGGATTGAACCTTTTTTTCTTTGTACAACTGCGGGGTGGGAAATTAAACCTTCGATCTCTAGGGACAGAGTGCACCAATACAATATTGACTGGCTAG

Coding sequence (CDS)

ATGACTAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGCAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAATACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGCTTGCTAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAATAATGTTCTTTATCTTCGAGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCAGGGTGGAGGATTGAACCTTTTTTTCTTTGTACAACTGCGGGGTGGGAAATTAAACCTTCGATCTCTAGGGACAGAGTGCACCAATACAATATTGACTGGCTAG

Protein sequence

MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAEQGGGLNLFFFVQLRGGKLNLRSLGTECTNTILTG

Homology

[Close]

BLAST of CaUC11G202350 vs. NCBI nr
Match: KAG6598461.1 (Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 91/110 (82.73%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 3   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 62
           SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGE
Sbjct: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGE 61

Query: 63  ILIRCNNVLYLRGVPEDEEIEDAEQGGGLNLFFFVQLRGGKLNLRSLGTE 113
           ILIRCNNVLYLRGVPEDEEIEDAE+ G L    F  L+   +  R+LG E
Sbjct: 62  ILIRCNNVLYLRGVPEDEEIEDAERTGTLQFGGFQNLQ-QSIRGRTLGME 110

[Close]

BLAST of CaUC11G202350 vs. NCBI nr
Match: CAB4267667.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. NCBI nr
Match: VVA24395.1 (PREDICTED: small nuclear, partial [Prunus dulcis])

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
           M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 35  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 94

Query: 61  GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
           GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 95  GEILIRCNNVLYLRGVPEDEEIEDAEQ 121

[Close]

BLAST of CaUC11G202350 vs. NCBI nr
Match: XP_007223820.1 (probable small nuclear ribonucleoprotein F [Prunus persica] >XP_034199093.1 probable small nuclear ribonucleoprotein F [Prunus dulcis] >ONI36415.1 hypothetical protein PRUPE_1G584000 [Prunus persica] >VVA24396.1 PREDICTED: small nuclear [Prunus dulcis])

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. NCBI nr
Match: CAB4298371.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 177.2 bits (448), Expect = 8.6e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. ExPASy Swiss-Prot
Match: Q9SUM2 (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-41
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLY+RGVPEDEE+EDA+Q
Sbjct: 61 GEILIRCNNVLYVRGVPEDEELEDADQ 87

[Close]

BLAST of CaUC11G202350 vs. ExPASy Swiss-Prot
Match: Q3T0Z8 (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 3  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 62
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of CaUC11G202350 vs. ExPASy Swiss-Prot
Match: P62306 (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 3  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 62
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of CaUC11G202350 vs. ExPASy Swiss-Prot
Match: P62307 (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 3  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 62
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of CaUC11G202350 vs. ExPASy Swiss-Prot
Match: P62321 (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 3  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 62
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of CaUC11G202350 vs. ExPASy TrEMBL
Match: M5XGF4 (Sm protein F OS=Prunus persica OX=3760 GN=PRUPE_1G584000 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. ExPASy TrEMBL
Match: A0A5E4F943 (Sm protein F OS=Prunus dulcis OX=3755 GN=ALMOND_2B032267 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. ExPASy TrEMBL
Match: A0A5E4F8R8 (Sm protein F (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B032267 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
           M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 35  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 94

Query: 61  GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
           GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 95  GEILIRCNNVLYLRGVPEDEEIEDAEQ 121

[Close]

BLAST of CaUC11G202350 vs. ExPASy TrEMBL
Match: A0A6J5TWU1 (Sm protein F OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10471 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. ExPASy TrEMBL
Match: A0A6J5WDD8 (Sm protein F OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS10673 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.2e-41
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+L
Sbjct: 1  MQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLYLRGVPEDEEIEDAEQ
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 87

[Close]

BLAST of CaUC11G202350 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-42
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          M +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLY+RGVPEDEE+EDA+Q
Sbjct: 61 GEILIRCNNVLYVRGVPEDEELEDADQ 87

[Close]

BLAST of CaUC11G202350 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-42
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MTSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSL 60
          + +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+L
Sbjct: 9  LQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 68

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDAEQ 88
          GEILIRCNNVLY+RGVPEDEE+EDA+Q
Sbjct: 69 GEILIRCNNVLYVRGVPEDEELEDADQ 95

[Close]

BLAST of CaUC11G202350 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 117.1 bits (292), Expect = 9.9e-27
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 28 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAEQ 87
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA+Q
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

[Close]

BLAST of CaUC11G202350 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 8  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 67
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 68 NNVLYL 74
          NNVLY+
Sbjct: 75 NNVLYI 80

[Close]

BLAST of CaUC11G202350 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 8  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 67
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 68 NNVLYL 74
          NNVLY+
Sbjct: 75 NNVLYI 80

The following BLAST results are available for this feature:

BLAST of CaUC11G202350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598461.1	1.7e-41	82.73	Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. soro...	[more]
CAB4267667.1	6.6e-41	95.40	unnamed protein product [Prunus armeniaca]	[more]
VVA24395.1	6.6e-41	95.40	PREDICTED: small nuclear, partial [Prunus dulcis]	[more]
XP_007223820.1	6.6e-41	95.40	probable small nuclear ribonucleoprotein F [Prunus persica] >XP_034199093.1 prob...	[more]
CAB4298371.1	8.6e-41	95.40	unnamed protein product [Prunus armeniaca]	[more]

BLAST of CaUC11G202350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM2	3.1e-41	88.51	Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q3T0Z8	5.3e-33	79.75	Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2	[more]
P62306	5.3e-33	79.75	Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1	[more]
P62307	5.3e-33	79.75	Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1	[more]
P62321	5.3e-33	79.75	Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1	[more]

BLAST of CaUC11G202350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5XGF4	3.2e-41	95.40	Sm protein F OS=Prunus persica OX=3760 GN=PRUPE_1G584000 PE=3 SV=1	[more]
A0A5E4F943	3.2e-41	95.40	Sm protein F OS=Prunus dulcis OX=3755 GN=ALMOND_2B032267 PE=3 SV=1	[more]
A0A5E4F8R8	3.2e-41	95.40	Sm protein F (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B032267 PE=3 SV=1	[more]
A0A6J5TWU1	3.2e-41	95.40	Sm protein F OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10471 PE=3 SV=1	[more]
A0A6J5WDD8	4.2e-41	95.40	Sm protein F OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS10673 PE=3 SV=1	[more]

BLAST of CaUC11G202350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30220.1	2.2e-42	88.51	small nuclear ribonucleoprotein F	[more]
AT4G30220.2	6.4e-42	87.36	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	9.9e-27	88.33	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.1	5.6e-14	46.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.2	5.6e-14	46.97	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..75 e-value: 6.2E-25 score: 98.8
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 11..73 e-value: 1.1E-21 score: 76.3
None	No IPR available	GENE3D	2.30.30.100		coord: 1..78 e-value: 8.0E-36 score: 123.6
None	No IPR available	PANTHER	PTHR11021:SF0	SMALL NUCLEAR RIBONUCLEOPROTEIN F	coord: 1..85
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 1..85
IPR034100	Small nuclear ribonucleoprotein F	CDD	cd01722	Sm_F	coord: 7..75 e-value: 1.49708E-48 score: 147.744
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G202350.1	CaUC11G202350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding