CaUC11G201810 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G201810
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionmediator-associated protein 2
LocationCiama_Chr11: 1397208 .. 1398545 (+)
RNA-Seq ExpressionCaUC11G201810
SyntenyCaUC11G201810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCGTGACCATCCATCTGCACTACCCATGATTTTCTTTCTTCAACGTTTACTGGTAATAGCGACGACGGCGACTCTTTCCGTTCGACTGAGGTGAAGGCGACGGCACTCGGACCACTTTCCGACAAGCTCACGGTGGTCCAAAGGTGTTCCGACGAAGCCACGGTAGTGAGCAAACGCTCCTCCGGCCAAACTGCGGCGGTTTAGTCATTCTCCTCCAGCCACGAACTGGTTTCTTTTTCCTCTCCGATTGCTCTTCCGACACTACGATAACAAACATCTTGGATATTTGTCCAACGGTCTCCTTCTTCGATATTGCAACATCTGGAGTTTCCACTGTAGTAAGCTCAAAACCATTTGACGAATCGTCTTCTTCTTTTTCTCTTTCGGTTTCTGCTCCTTTGTCTTGTTCGATTTTGCCTTCTTTTACGTCAATCATCCATGGACGCTAATGGTTTGTAAGAATCTGATTTTGCCTCTTTCCCTTTGATTTCTTCGTCACTATTTTCGTTTTCTCCATAACTATCATCTGCTTCGTCTTCAGCCTCATATTCCTTTTGTGAAGATTTACAGAGGATATCTCATGAAGTGTTCGAAGATTTTTTGGTATAGAATCTGATGGGTATATGTAGTATGTGTAGGATATTTGAGTTTATTTGTTATTTGGTTGGATGGTTTGGAACGTCTAGATGATGTATAGTATTGATGAACATGGTAATGAGAGGATGAATATGGTGGTAGTAATGGTGGTGAGGGTGAGGTGTTTTGGGGTTGTTTGACGAAATGCCCGGAGTTTTCAATTGGTGGCGTCTTCTTTTTCCTTCTCCATTACGTTAAGTGATATTGTTTTGTTGTTTGTTGTTTCAGGGACTTAACTAGCTTTGAGTATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGTAAGATATTATAAACTAATCTAGAAAAATATTATAGCTACCTGCAGTTTGGGAGAAATTAAAATGAAGAACCCATAAATGTACTTTTTTTTCATCCAAGATTGAAGTTTGTTGCAGCCATTTTAAATGCTGTTTAACTTGAGAGGGATTTATTATTTTTCTTCAATGGGTACTGTAGGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGGTAACTATCATTTTGTTGGTGATTTACATTTTTTTGTAAAGAAGCATTGA

mRNA sequence

TCTTCGTGACCATCCATCTGCACTACCCATGATTTTCTTTCTTCAACGTTTACTGGTAATAGCGACGACGGCGACTCTTTCCGTTCGACTGAGGTGAAGGCGACGGCACTCGGACCACTTTCCGACAAGCTCACGGTGGTCCAAAGGTGTTCCGACGAAGCCACGGTAGTGAGCAAACGCTCCTCCGGCCAAACTGCGGCGGTTTAGTCATTCTCCTCCAGCCACGAACTGGTTTCTTTTTCCTCTCCGATTGCTCTTCCGACACTACGATAACAAACATCTTGGATATTTGTCCAACGGTCTCCTTCTTCGATATTGCAACATCTGGAGTTTCCACTGTAGGACTTAACTAGCTTTGAGTATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGGTAACTATCATTTTGTTGGTGATTTACATTTTTTTGTAAAGAAGCATTGA

Coding sequence (CDS)

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGGTAACTATCATTTTGTTGGTGATTTACATTTTTTTGTAAAGAAGCATTGA

Protein sequence

MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSSSGNYHFVGDLHFFVKKH
Homology
[Close]
BLAST of CaUC11G201810 vs. NCBI nr
Match: XP_004146046.1 (mediator-associated protein 2 [Cucumis sativus] >XP_031740697.1 mediator-associated protein 2 [Cucumis sativus] >KGN55103.1 hypothetical protein Csa_012926 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-30
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE+KREFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGH+GSFQ SSG  + V
Sbjct: 61 LHPDGHMGSFQGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. NCBI nr
Match: XP_008463699.1 (PREDICTED: mediator-associated protein 2 [Cucumis melo] >KAA0066809.1 mediator-associated protein 2 [Cucumis melo var. makuwa] >TYK27956.1 mediator-associated protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 8.7e-30
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE++REFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGH+GSFQ SSG  + V
Sbjct: 61 LHPDGHMGSFQGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. NCBI nr
Match: XP_038896123.1 (mediator-associated protein 2 [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          M NEVDAF SVEGYKPPAEFEE+KREFLTDISLS+  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MINEVDAFISVEGYKPPAEFEEDKREFLTDISLSNSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDG LGSFQ SSG  + V
Sbjct: 61 LHPDGRLGSFQGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. NCBI nr
Match: XP_022935730.1 (mediator-associated protein 2-like [Cucurbita moschata])

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-29
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MSNEVDA +SVE YKPP EFEE+KRE LTD+SLS+CAELWLIQWP+NQAPDFDGQE SLQ
Sbjct: 1  MSNEVDACRSVERYKPPPEFEEDKRELLTDMSLSNCAELWLIQWPANQAPDFDGQELSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGHLGSF  SSG  + V
Sbjct: 61 LHPDGHLGSFNGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. NCBI nr
Match: KAG6591938.1 (Mediator-associated protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-29
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MSNEVDA +SVE YKPP EFEE+KRE LTD+SLS+CAELWLIQWP+NQAPDFDGQE SLQ
Sbjct: 1  MSNEVDACRSVERYKPPPEFEEDKRELLTDMSLSNCAELWLIQWPANQAPDFDGQELSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGHLGSF  SSG  + V
Sbjct: 61 LHPDGHLGSFNGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match: A0A0A0L047 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629490 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE+KREFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGH+GSFQ SSG  + V
Sbjct: 61 LHPDGHMGSFQGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match: A0A5A7VNG7 (Mediator-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.2e-30
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE++REFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGH+GSFQ SSG  + V
Sbjct: 61 LHPDGHMGSFQGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match: A0A1S3CLF4 (mediator-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103501782 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.2e-30
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE++REFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGH+GSFQ SSG  + V
Sbjct: 61 LHPDGHMGSFQGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match: A0A6J1FBH2 (mediator-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442553 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.7e-29
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MSNEVDA +SVE YKPP EFEE+KRE LTD+SLS+CAELWLIQWP+NQAPDFDGQE SLQ
Sbjct: 1  MSNEVDACRSVERYKPPPEFEEDKRELLTDMSLSNCAELWLIQWPANQAPDFDGQELSLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGHLGSF  SSG  + V
Sbjct: 61 LHPDGHLGSFNGSSGKSYDV 80

[Close]
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match: A0A6J1INX8 (mediator-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111476933 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.0e-29
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA +SVE YKPP EFEE+KREFLTD+SLS+CAELWLIQWP+NQ+PDFDGQE SLQ
Sbjct: 1  MSSEVDACKSVERYKPPPEFEEDKREFLTDMSLSNCAELWLIQWPANQSPDFDGQEISLQ 60

Query: 61 LHPDGHLGSFQSSSGNYHFV 81
          LHPDGHLGSF  SSG  + V
Sbjct: 61 LHPDGHLGSFNGSSGKSYDV 80

The following BLAST results are available for this feature:
BLAST of CaUC11G201810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146046.13.9e-3081.25mediator-associated protein 2 [Cucumis sativus] >XP_031740697.1 mediator-associa... [more]
XP_008463699.18.7e-3080.00PREDICTED: mediator-associated protein 2 [Cucumis melo] >KAA0066809.1 mediator-a... [more]
XP_038896123.11.1e-2983.75mediator-associated protein 2 [Benincasa hispida][more]
XP_022935730.19.7e-2980.00mediator-associated protein 2-like [Cucurbita moschata][more]
KAG6591938.19.7e-2980.00Mediator-associated protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CaUC11G201810 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0471.9e-3081.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629490 PE=4 SV=1[more]
A0A5A7VNG74.2e-3080.00Mediator-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3CLF44.2e-3080.00mediator-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103501782 PE=4 SV=1[more]
A0A6J1FBH24.7e-2980.00mediator-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442553... [more]
A0A6J1INX88.0e-2978.75mediator-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111476933 P... [more]
BLAST of CaUC11G201810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038823Mediator-associated protein 2, plantPANTHERPTHR36407MEDIATOR-ASSOCIATED PROTEIN 2coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G201810.1CaUC11G201810.1mRNA